EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000002880 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Plus strand
Length: 38218 bases
Position: chrGeneScaffold_5821:1168-39385
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000002489	TruB_N	PF01509.18	3.8e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000002877	TRUB1-201	750	-	ENSTBEP00000002489	249 (aa)	-	UPI0000F60D52

Gene Model

Click here to download ENSTBEG00000002880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000002880's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000002880	TRUB1	99	76.680	ENSG00000165832	TRUB1	72	76.680	Homo_sapiens
ENSTBEG00000002880	TRUB1	83	59.434	ENSAPOG00000020565	trub1	81	58.559	Acanthochromis_polyacanthus
ENSTBEG00000002880	TRUB1	100	75.781	ENSAMEG00000014931	TRUB1	73	75.781	Ailuropoda_melanoleuca
ENSTBEG00000002880	TRUB1	83	52.358	ENSACIG00000003060	trub1	68	56.667	Amphilophus_citrinellus
ENSTBEG00000002880	TRUB1	83	59.434	ENSAOCG00000017188	trub1	81	58.559	Amphiprion_ocellaris
ENSTBEG00000002880	TRUB1	83	58.962	ENSAPEG00000015209	trub1	81	58.108	Amphiprion_percula
ENSTBEG00000002880	TRUB1	85	57.604	ENSATEG00000023291	trub1	77	57.604	Anabas_testudineus
ENSTBEG00000002880	TRUB1	90	62.882	ENSAPLG00000006808	TRUB1	82	62.882	Anas_platyrhynchos
ENSTBEG00000002880	TRUB1	91	61.638	ENSACAG00000009282	TRUB1	84	61.638	Anolis_carolinensis
ENSTBEG00000002880	TRUB1	99	77.381	ENSANAG00000022870	TRUB1	72	77.381	Aotus_nancymaae
ENSTBEG00000002880	TRUB1	86	56.881	ENSACLG00000000823	trub1	78	56.881	Astatotilapia_calliptera
ENSTBEG00000002880	TRUB1	89	58.590	ENSAMXG00000015845	trub1	76	58.590	Astyanax_mexicanus
ENSTBEG00000002880	TRUB1	99	78.261	ENSBTAG00000012955	TRUB1	72	78.261	Bos_taurus
ENSTBEG00000002880	TRUB1	99	77.470	ENSCJAG00000047815	TRUB1	72	77.470	Callithrix_jacchus
ENSTBEG00000002880	TRUB1	99	78.656	ENSCAFG00000011688	TRUB1	72	78.656	Canis_familiaris
ENSTBEG00000002880	TRUB1	99	78.656	ENSCAFG00020013237	TRUB1	72	78.656	Canis_lupus_dingo
ENSTBEG00000002880	TRUB1	99	77.470	ENSCHIG00000020884	TRUB1	76	77.470	Capra_hircus
ENSTBEG00000002880	TRUB1	99	77.075	ENSTSYG00000000446	TRUB1	72	77.075	Carlito_syrichta
ENSTBEG00000002880	TRUB1	99	68.775	ENSCAPG00000017088	TRUB1	99	68.775	Cavia_aperea
ENSTBEG00000002880	TRUB1	99	77.075	ENSCCAG00000028842	TRUB1	72	77.075	Cebus_capucinus
ENSTBEG00000002880	TRUB1	99	77.075	ENSCATG00000033431	TRUB1	72	77.075	Cercocebus_atys
ENSTBEG00000002880	TRUB1	99	77.470	ENSCSAG00000004891	TRUB1	72	77.470	Chlorocebus_sabaeus
ENSTBEG00000002880	TRUB1	98	61.044	ENSCHOG00000011931	TRUB1	71	61.044	Choloepus_hoffmanni
ENSTBEG00000002880	TRUB1	90	65.789	ENSCPBG00000003051	TRUB1	79	65.789	Chrysemys_picta_bellii
ENSTBEG00000002880	TRUB1	99	77.470	ENSCANG00000029445	TRUB1	72	77.470	Colobus_angolensis_palliatus
ENSTBEG00000002880	TRUB1	99	73.518	ENSCGRG00001016772	-	84	73.518	Cricetulus_griseus_chok1gshd
ENSTBEG00000002880	TRUB1	99	68.273	ENSCGRG00001010322	-	68	68.273	Cricetulus_griseus_chok1gshd
ENSTBEG00000002880	TRUB1	99	73.518	ENSCGRG00000010806	Trub1	77	73.518	Cricetulus_griseus_crigri
ENSTBEG00000002880	TRUB1	83	54.502	ENSCSEG00000011261	trub1	68	54.502	Cynoglossus_semilaevis
ENSTBEG00000002880	TRUB1	83	58.491	ENSCVAG00000008791	trub1	65	58.491	Cyprinodon_variegatus
ENSTBEG00000002880	TRUB1	94	55.230	ENSDARG00000053805	trub1	76	75.714	Danio_rerio
ENSTBEG00000002880	TRUB1	99	73.123	ENSDNOG00000001069	TRUB1	72	73.123	Dasypus_novemcinctus
ENSTBEG00000002880	TRUB1	99	76.680	ENSDORG00000010431	Trub1	73	76.680	Dipodomys_ordii
ENSTBEG00000002880	TRUB1	75	87.379	ENSETEG00000009183	TRUB1	53	87.379	Echinops_telfairi
ENSTBEG00000002880	TRUB1	99	76.680	ENSEASG00005014739	TRUB1	72	76.680	Equus_asinus_asinus
ENSTBEG00000002880	TRUB1	99	76.680	ENSECAG00000007177	TRUB1	72	76.680	Equus_caballus
ENSTBEG00000002880	TRUB1	99	65.217	ENSEEUG00000013993	TRUB1	70	65.217	Erinaceus_europaeus
ENSTBEG00000002880	TRUB1	83	59.716	ENSELUG00000000502	trub1	74	59.716	Esox_lucius
ENSTBEG00000002880	TRUB1	100	77.165	ENSFCAG00000031927	TRUB1	73	77.165	Felis_catus
ENSTBEG00000002880	TRUB1	89	64.758	ENSFALG00000002232	TRUB1	88	64.758	Ficedula_albicollis
ENSTBEG00000002880	TRUB1	83	57.075	ENSFHEG00000004016	trub1	73	57.075	Fundulus_heteroclitus
ENSTBEG00000002880	TRUB1	90	62.281	ENSGALG00000009091	TRUB1	95	58.937	Gallus_gallus
ENSTBEG00000002880	TRUB1	80	55.610	ENSGAFG00000009193	trub1	72	55.610	Gambusia_affinis
ENSTBEG00000002880	TRUB1	78	57.000	ENSGACG00000015387	trub1	98	57.000	Gasterosteus_aculeatus
ENSTBEG00000002880	TRUB1	90	65.789	ENSGAGG00000009758	TRUB1	65	65.789	Gopherus_agassizii
ENSTBEG00000002880	TRUB1	99	77.470	ENSGGOG00000004583	TRUB1	72	77.470	Gorilla_gorilla
ENSTBEG00000002880	TRUB1	86	56.881	ENSHBUG00000016787	trub1	78	56.881	Haplochromis_burtoni
ENSTBEG00000002880	TRUB1	99	74.704	ENSHGLG00000015314	TRUB1	72	74.704	Heterocephalus_glaber_female
ENSTBEG00000002880	TRUB1	83	57.820	ENSHCOG00000017877	trub1	76	57.820	Hippocampus_comes
ENSTBEG00000002880	TRUB1	90	56.769	ENSIPUG00000017559	trub1	81	56.769	Ictalurus_punctatus
ENSTBEG00000002880	TRUB1	99	75.889	ENSSTOG00000003641	TRUB1	76	75.889	Ictidomys_tridecemlineatus
ENSTBEG00000002880	TRUB1	99	75.494	ENSJJAG00000011800	Trub1	74	75.494	Jaculus_jaculus
ENSTBEG00000002880	TRUB1	86	56.502	ENSKMAG00000006232	trub1	80	56.502	Kryptolebias_marmoratus
ENSTBEG00000002880	TRUB1	91	54.741	ENSLBEG00000026722	trub1	80	54.741	Labrus_bergylta
ENSTBEG00000002880	TRUB1	90	62.719	ENSLACG00000014885	TRUB1	77	62.719	Latimeria_chalumnae
ENSTBEG00000002880	TRUB1	86	62.844	ENSLOCG00000012979	trub1	74	62.844	Lepisosteus_oculatus
ENSTBEG00000002880	TRUB1	99	67.308	ENSLAFG00000015452	TRUB1	74	68.462	Loxodonta_africana
ENSTBEG00000002880	TRUB1	99	77.470	ENSMFAG00000031767	TRUB1	72	77.470	Macaca_fascicularis
ENSTBEG00000002880	TRUB1	99	77.470	ENSMMUG00000001902	TRUB1	72	77.470	Macaca_mulatta
ENSTBEG00000002880	TRUB1	99	71.937	ENSMNEG00000044646	TRUB1	71	71.937	Macaca_nemestrina
ENSTBEG00000002880	TRUB1	99	77.470	ENSMLEG00000042655	TRUB1	72	77.470	Mandrillus_leucophaeus
ENSTBEG00000002880	TRUB1	86	56.881	ENSMZEG00005024095	trub1	78	56.881	Maylandia_zebra
ENSTBEG00000002880	TRUB1	89	62.555	ENSMGAG00000011135	TRUB1	78	62.555	Meleagris_gallopavo
ENSTBEG00000002880	TRUB1	99	71.032	ENSMAUG00000011101	Trub1	74	71.032	Mesocricetus_auratus
ENSTBEG00000002880	TRUB1	99	78.261	ENSMICG00000016324	TRUB1	72	78.261	Microcebus_murinus
ENSTBEG00000002880	TRUB1	99	72.332	ENSMOCG00000017759	Trub1	76	72.332	Microtus_ochrogaster
ENSTBEG00000002880	TRUB1	93	67.932	ENSMODG00000009676	TRUB1	65	67.932	Monodelphis_domestica
ENSTBEG00000002880	TRUB1	99	72.332	MGP_CAROLIEiJ_G0023100	Trub1	75	72.332	Mus_caroli
ENSTBEG00000002880	TRUB1	99	71.542	ENSMUSG00000025086	Trub1	75	71.542	Mus_musculus
ENSTBEG00000002880	TRUB1	99	72.727	MGP_PahariEiJ_G0014588	Trub1	75	72.727	Mus_pahari
ENSTBEG00000002880	TRUB1	99	72.332	MGP_SPRETEiJ_G0024021	Trub1	75	72.332	Mus_spretus
ENSTBEG00000002880	TRUB1	100	77.953	ENSMPUG00000003556	TRUB1	73	77.953	Mustela_putorius_furo
ENSTBEG00000002880	TRUB1	99	74.704	ENSMLUG00000017686	TRUB1	74	74.704	Myotis_lucifugus
ENSTBEG00000002880	TRUB1	99	75.889	ENSNGAG00000018682	Trub1	73	75.889	Nannospalax_galili
ENSTBEG00000002880	TRUB1	83	58.019	ENSNBRG00000023393	trub1	76	58.019	Neolamprologus_brichardi
ENSTBEG00000002880	TRUB1	99	77.075	ENSNLEG00000016345	TRUB1	72	77.075	Nomascus_leucogenys
ENSTBEG00000002880	TRUB1	66	71.429	ENSMEUG00000006603	TRUB1	62	71.429	Notamacropus_eugenii
ENSTBEG00000002880	TRUB1	99	72.332	ENSOPRG00000009371	TRUB1	74	72.332	Ochotona_princeps
ENSTBEG00000002880	TRUB1	99	73.123	ENSODEG00000010854	TRUB1	72	73.123	Octodon_degus
ENSTBEG00000002880	TRUB1	88	56.000	ENSONIG00000007249	trub1	82	56.000	Oreochromis_niloticus
ENSTBEG00000002880	TRUB1	93	65.401	ENSOANG00000001556	TRUB1	78	65.401	Ornithorhynchus_anatinus
ENSTBEG00000002880	TRUB1	99	73.518	ENSOCUG00000009456	TRUB1	73	73.518	Oryctolagus_cuniculus
ENSTBEG00000002880	TRUB1	82	57.416	ENSORLG00000029719	trub1	75	57.416	Oryzias_latipes
ENSTBEG00000002880	TRUB1	82	57.416	ENSORLG00020016767	trub1	74	57.416	Oryzias_latipes_hni
ENSTBEG00000002880	TRUB1	90	55.263	ENSORLG00015014728	trub1	80	55.263	Oryzias_latipes_hsok
ENSTBEG00000002880	TRUB1	84	57.674	ENSOMEG00000014556	trub1	75	57.674	Oryzias_melastigma
ENSTBEG00000002880	TRUB1	99	78.261	ENSOGAG00000015895	TRUB1	72	78.261	Otolemur_garnettii
ENSTBEG00000002880	TRUB1	99	76.863	ENSOARG00000015591	TRUB1	72	76.863	Ovis_aries
ENSTBEG00000002880	TRUB1	99	77.470	ENSPPAG00000043645	TRUB1	72	77.470	Pan_paniscus
ENSTBEG00000002880	TRUB1	100	76.772	ENSPPRG00000007096	TRUB1	73	76.772	Panthera_pardus
ENSTBEG00000002880	TRUB1	100	77.165	ENSPTIG00000006378	TRUB1	73	77.165	Panthera_tigris_altaica
ENSTBEG00000002880	TRUB1	99	77.470	ENSPTRG00000002964	TRUB1	72	77.470	Pan_troglodytes
ENSTBEG00000002880	TRUB1	99	77.470	ENSPANG00000020712	TRUB1	72	77.470	Papio_anubis
ENSTBEG00000002880	TRUB1	65	56.287	ENSPKIG00000003852	trub1	72	56.287	Paramormyrops_kingsleyae
ENSTBEG00000002880	TRUB1	90	64.035	ENSPSIG00000012877	TRUB1	79	64.035	Pelodiscus_sinensis
ENSTBEG00000002880	TRUB1	83	56.667	ENSPMGG00000000075	trub1	76	56.667	Periophthalmus_magnuspinnatus
ENSTBEG00000002880	TRUB1	99	70.356	ENSPEMG00000011156	Trub1	74	70.356	Peromyscus_maniculatus_bairdii
ENSTBEG00000002880	TRUB1	100	64.567	ENSPCIG00000009729	TRUB1	69	64.567	Phascolarctos_cinereus
ENSTBEG00000002880	TRUB1	83	57.346	ENSPFOG00000009950	trub1	77	57.346	Poecilia_formosa
ENSTBEG00000002880	TRUB1	83	56.872	ENSPLAG00000013855	trub1	74	56.872	Poecilia_latipinna
ENSTBEG00000002880	TRUB1	83	57.346	ENSPMEG00000009064	trub1	76	57.346	Poecilia_mexicana
ENSTBEG00000002880	TRUB1	83	58.294	ENSPREG00000003343	trub1	76	58.294	Poecilia_reticulata
ENSTBEG00000002880	TRUB1	99	77.075	ENSPPYG00000002676	TRUB1	72	77.075	Pongo_abelii
ENSTBEG00000002880	TRUB1	99	61.660	ENSPCAG00000008427	TRUB1	72	61.660	Procavia_capensis
ENSTBEG00000002880	TRUB1	99	71.542	ENSPCOG00000024360	TRUB1	71	71.542	Propithecus_coquereli
ENSTBEG00000002880	TRUB1	66	77.381	ENSPVAG00000007575	TRUB1	64	77.381	Pteropus_vampyrus
ENSTBEG00000002880	TRUB1	86	56.881	ENSPNYG00000018614	trub1	78	56.881	Pundamilia_nyererei
ENSTBEG00000002880	TRUB1	76	56.410	ENSPNAG00000006881	trub1	72	56.410	Pygocentrus_nattereri
ENSTBEG00000002880	TRUB1	99	73.123	ENSRNOG00000017321	Trub1	74	73.123	Rattus_norvegicus
ENSTBEG00000002880	TRUB1	99	68.379	ENSRBIG00000033423	TRUB1	70	68.379	Rhinopithecus_bieti
ENSTBEG00000002880	TRUB1	99	77.470	ENSRROG00000033902	TRUB1	72	77.470	Rhinopithecus_roxellana
ENSTBEG00000002880	TRUB1	99	77.075	ENSSBOG00000024237	TRUB1	72	77.075	Saimiri_boliviensis_boliviensis
ENSTBEG00000002880	TRUB1	100	64.844	ENSSHAG00000009346	TRUB1	86	64.844	Sarcophilus_harrisii
ENSTBEG00000002880	TRUB1	78	63.000	ENSSFOG00015022124	trub1	68	63.000	Scleropages_formosus
ENSTBEG00000002880	TRUB1	83	58.962	ENSSMAG00000001020	trub1	75	58.962	Scophthalmus_maximus
ENSTBEG00000002880	TRUB1	83	58.962	ENSSDUG00000016414	trub1	76	58.962	Seriola_dumerili
ENSTBEG00000002880	TRUB1	83	59.434	ENSSLDG00000015486	trub1	76	59.434	Seriola_lalandi_dorsalis
ENSTBEG00000002880	TRUB1	93	63.713	ENSSPUG00000001642	TRUB1	81	63.713	Sphenodon_punctatus
ENSTBEG00000002880	TRUB1	90	57.642	ENSSPAG00000001217	trub1	81	57.642	Stegastes_partitus
ENSTBEG00000002880	TRUB1	99	75.889	ENSSSCG00000010653	TRUB1	72	75.889	Sus_scrofa
ENSTBEG00000002880	TRUB1	89	65.198	ENSTGUG00000010971	TRUB1	81	65.198	Taeniopygia_guttata
ENSTBEG00000002880	TRUB1	66	77.381	ENSTTRG00000005767	TRUB1	64	77.381	Tursiops_truncatus
ENSTBEG00000002880	TRUB1	100	78.346	ENSUAMG00000024876	TRUB1	73	78.346	Ursus_americanus
ENSTBEG00000002880	TRUB1	100	77.953	ENSUMAG00000002411	TRUB1	75	77.953	Ursus_maritimus
ENSTBEG00000002880	TRUB1	99	77.075	ENSVPAG00000005507	TRUB1	72	77.075	Vicugna_pacos
ENSTBEG00000002880	TRUB1	99	78.656	ENSVVUG00000010085	TRUB1	61	78.656	Vulpes_vulpes
ENSTBEG00000002880	TRUB1	89	58.150	ENSXETG00000023828	trub1	83	58.150	Xenopus_tropicalis
ENSTBEG00000002880	TRUB1	80	55.882	ENSXCOG00000017847	trub1	72	55.882	Xiphophorus_couchianus
ENSTBEG00000002880	TRUB1	83	55.924	ENSXMAG00000014701	trub1	76	55.924	Xiphophorus_maculatus