EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000003229 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Minus strand
Length: 18128 bases
Position: chrGeneScaffold_1990:42433-60560
Accession: 20439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000002793	Smg4_UPF3	PF03467.15	1.3e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000003230	UPF3B-201	1452	-	ENSTBEP00000002793	483 (aa)	-	UPI0000F5E7AA

Gene Model

Click here to download ENSTBEG00000003229's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000003229's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000003229	UPF3B	100	79.089	ENSG00000125351	UPF3B	100	79.089	Homo_sapiens
ENSTBEG00000003229	UPF3B	93	48.485	ENSAPOG00000012775	upf3b	94	48.491	Acanthochromis_polyacanthus
ENSTBEG00000003229	UPF3B	100	79.503	ENSAMEG00000000163	UPF3B	100	79.503	Ailuropoda_melanoleuca
ENSTBEG00000003229	UPF3B	63	53.535	ENSACIG00000013582	upf3b	94	44.206	Amphilophus_citrinellus
ENSTBEG00000003229	UPF3B	93	47.174	ENSAOCG00000000706	upf3b	94	47.845	Amphiprion_ocellaris
ENSTBEG00000003229	UPF3B	93	48.156	ENSAPEG00000005545	upf3b	94	48.491	Amphiprion_percula
ENSTBEG00000003229	UPF3B	94	48.922	ENSATEG00000018742	upf3b	94	49.138	Anabas_testudineus
ENSTBEG00000003229	UPF3B	91	55.830	ENSACAG00000003625	UPF3B	99	54.192	Anolis_carolinensis
ENSTBEG00000003229	UPF3B	100	71.843	ENSANAG00000025598	-	100	93.805	Aotus_nancymaae
ENSTBEG00000003229	UPF3B	100	79.710	ENSANAG00000021894	-	100	83.271	Aotus_nancymaae
ENSTBEG00000003229	UPF3B	74	57.509	ENSACLG00000001649	upf3b	94	48.596	Astatotilapia_calliptera
ENSTBEG00000003229	UPF3B	67	84.015	ENSBTAG00000035615	UPF3B	100	84.015	Bos_taurus
ENSTBEG00000003229	UPF3B	100	79.710	ENSCJAG00000004975	UPF3B	100	83.271	Callithrix_jacchus
ENSTBEG00000003229	UPF3B	100	79.089	ENSCAFG00000018426	UPF3B	100	79.089	Canis_familiaris
ENSTBEG00000003229	UPF3B	100	74.741	ENSCAFG00020004074	UPF3B	100	95.726	Canis_lupus_dingo
ENSTBEG00000003229	UPF3B	100	79.296	ENSCHIG00000000247	-	100	79.296	Capra_hircus
ENSTBEG00000003229	UPF3B	79	57.233	ENSCHIG00000011454	-	92	46.396	Capra_hircus
ENSTBEG00000003229	UPF3B	98	78.390	ENSCHIG00000018011	-	100	83.643	Capra_hircus
ENSTBEG00000003229	UPF3B	100	76.812	ENSTSYG00000014690	UPF3B	100	78.111	Carlito_syrichta
ENSTBEG00000003229	UPF3B	84	54.074	ENSCCAG00000029813	-	87	55.556	Cebus_capucinus
ENSTBEG00000003229	UPF3B	70	70.423	ENSCCAG00000021964	-	100	70.423	Cebus_capucinus
ENSTBEG00000003229	UPF3B	100	78.882	ENSCATG00000017506	UPF3B	100	83.271	Cercocebus_atys
ENSTBEG00000003229	UPF3B	100	74.534	ENSCLAG00000003260	UPF3B	100	74.948	Chinchilla_lanigera
ENSTBEG00000003229	UPF3B	100	79.089	ENSCSAG00000018348	UPF3B	100	79.089	Chlorocebus_sabaeus
ENSTBEG00000003229	UPF3B	80	70.701	ENSCPBG00000020685	UPF3B	75	82.759	Chrysemys_picta_bellii
ENSTBEG00000003229	UPF3B	70	83.271	ENSCANG00000029220	UPF3B	100	83.271	Colobus_angolensis_palliatus
ENSTBEG00000003229	UPF3B	75	62.637	ENSCGRG00001013643	-	94	59.722	Cricetulus_griseus_chok1gshd
ENSTBEG00000003229	UPF3B	100	67.629	ENSCGRG00001006858	-	100	67.835	Cricetulus_griseus_chok1gshd
ENSTBEG00000003229	UPF3B	89	66.975	ENSCGRG00000007627	Upf3b	100	67.667	Cricetulus_griseus_crigri
ENSTBEG00000003229	UPF3B	93	48.268	ENSCSEG00000002046	upf3b	90	48.380	Cynoglossus_semilaevis
ENSTBEG00000003229	UPF3B	67	53.589	ENSCVAG00000005030	upf3b	87	55.839	Cyprinodon_variegatus
ENSTBEG00000003229	UPF3B	77	58.484	ENSDARG00000000489	upf3b	97	48.041	Danio_rerio
ENSTBEG00000003229	UPF3B	100	78.882	ENSDNOG00000008665	UPF3B	100	78.882	Dasypus_novemcinctus
ENSTBEG00000003229	UPF3B	100	71.636	ENSDORG00000006077	Upf3b	100	71.636	Dipodomys_ordii
ENSTBEG00000003229	UPF3B	56	39.837	ENSETEG00000010110	UPF3A	54	41.935	Echinops_telfairi
ENSTBEG00000003229	UPF3B	99	75.311	ENSEASG00005012919	UPF3B	100	96.460	Equus_asinus_asinus
ENSTBEG00000003229	UPF3B	99	75.311	ENSECAG00000016947	UPF3B	100	92.647	Equus_caballus
ENSTBEG00000003229	UPF3B	56	57.091	ENSELUG00000020389	upf3b	67	57.091	Esox_lucius
ENSTBEG00000003229	UPF3B	100	77.938	ENSFCAG00000004388	UPF3B	100	78.557	Felis_catus
ENSTBEG00000003229	UPF3B	99	56.687	ENSFALG00000001569	UPF3B	99	56.200	Ficedula_albicollis
ENSTBEG00000003229	UPF3B	100	76.398	ENSFDAG00000018869	UPF3B	100	76.398	Fukomys_damarensis
ENSTBEG00000003229	UPF3B	70	55.474	ENSFHEG00000017895	upf3b	93	43.791	Fundulus_heteroclitus
ENSTBEG00000003229	UPF3B	71	55.109	ENSGMOG00000001621	upf3b	93	46.652	Gadus_morhua
ENSTBEG00000003229	UPF3B	91	58.259	ENSGALG00000008618	UPF3B	99	56.707	Gallus_gallus
ENSTBEG00000003229	UPF3B	93	46.374	ENSGAFG00000000829	upf3b	94	46.004	Gambusia_affinis
ENSTBEG00000003229	UPF3B	73	57.143	ENSGACG00000017435	upf3b	94	58.088	Gasterosteus_aculeatus
ENSTBEG00000003229	UPF3B	99	55.010	ENSGAGG00000001219	UPF3B	99	55.081	Gopherus_agassizii
ENSTBEG00000003229	UPF3B	100	79.089	ENSGGOG00000023995	UPF3B	100	83.271	Gorilla_gorilla
ENSTBEG00000003229	UPF3B	74	57.509	ENSHBUG00000017393	upf3b	94	48.596	Haplochromis_burtoni
ENSTBEG00000003229	UPF3B	100	75.362	ENSHGLG00000019582	-	100	75.776	Heterocephalus_glaber_female
ENSTBEG00000003229	UPF3B	86	66.506	ENSHGLG00000011189	-	96	66.988	Heterocephalus_glaber_female
ENSTBEG00000003229	UPF3B	100	72.050	ENSHGLG00100002042	-	100	73.085	Heterocephalus_glaber_male
ENSTBEG00000003229	UPF3B	86	66.747	ENSHGLG00100001889	-	96	66.265	Heterocephalus_glaber_male
ENSTBEG00000003229	UPF3B	93	47.289	ENSHCOG00000017004	upf3b	93	47.072	Hippocampus_comes
ENSTBEG00000003229	UPF3B	54	55.828	ENSHCOG00000013985	upf3a	53	69.841	Hippocampus_comes
ENSTBEG00000003229	UPF3B	100	46.680	ENSIPUG00000019249	upf3b	100	47.686	Ictalurus_punctatus
ENSTBEG00000003229	UPF3B	100	74.741	ENSSTOG00000001101	UPF3B	100	75.155	Ictidomys_tridecemlineatus
ENSTBEG00000003229	UPF3B	100	71.753	ENSJJAG00000000053	Upf3b	100	71.959	Jaculus_jaculus
ENSTBEG00000003229	UPF3B	75	56.410	ENSKMAG00000020300	upf3b	99	46.488	Kryptolebias_marmoratus
ENSTBEG00000003229	UPF3B	56	57.143	ENSLBEG00000028689	upf3b	56	57.143	Labrus_bergylta
ENSTBEG00000003229	UPF3B	55	60.127	ENSLACG00000008691	UPF3B	100	47.337	Latimeria_chalumnae
ENSTBEG00000003229	UPF3B	60	62.931	ENSLOCG00000015238	upf3b	93	48.730	Lepisosteus_oculatus
ENSTBEG00000003229	UPF3B	100	74.741	ENSLAFG00000001267	UPF3B	100	75.155	Loxodonta_africana
ENSTBEG00000003229	UPF3B	89	35.253	ENSLAFG00000023358	UPF3A	55	51.592	Loxodonta_africana
ENSTBEG00000003229	UPF3B	100	78.882	ENSMFAG00000045414	UPF3B	100	83.271	Macaca_fascicularis
ENSTBEG00000003229	UPF3B	100	78.882	ENSMMUG00000020222	UPF3B	100	83.271	Macaca_mulatta
ENSTBEG00000003229	UPF3B	100	78.882	ENSMNEG00000039794	UPF3B	100	83.271	Macaca_nemestrina
ENSTBEG00000003229	UPF3B	100	78.882	ENSMLEG00000010999	UPF3B	100	83.271	Mandrillus_leucophaeus
ENSTBEG00000003229	UPF3B	60	54.028	ENSMAMG00000020069	upf3b	68	55.450	Mastacembelus_armatus
ENSTBEG00000003229	UPF3B	74	57.509	ENSMZEG00005007871	upf3b	94	48.712	Maylandia_zebra
ENSTBEG00000003229	UPF3B	81	55.611	ENSMGAG00000007728	UPF3B	99	56.110	Meleagris_gallopavo
ENSTBEG00000003229	UPF3B	100	70.722	ENSMAUG00000008705	Upf3b	100	70.928	Mesocricetus_auratus
ENSTBEG00000003229	UPF3B	67	82.593	ENSMICG00000001743	UPF3B	100	90.000	Microcebus_murinus
ENSTBEG00000003229	UPF3B	100	71.546	ENSMOCG00000017893	Upf3b	100	71.753	Microtus_ochrogaster
ENSTBEG00000003229	UPF3B	58	53.459	ENSMODG00000003159	UPF3A	57	53.459	Monodelphis_domestica
ENSTBEG00000003229	UPF3B	89	59.681	ENSMODG00000010232	UPF3B	99	59.589	Monodelphis_domestica
ENSTBEG00000003229	UPF3B	70	56.777	ENSMALG00000008042	upf3b	94	48.077	Monopterus_albus
ENSTBEG00000003229	UPF3B	100	68.660	MGP_CAROLIEiJ_G0032999	Upf3b	100	68.866	Mus_caroli
ENSTBEG00000003229	UPF3B	100	68.866	ENSMUSG00000036572	Upf3b	100	69.072	Mus_musculus
ENSTBEG00000003229	UPF3B	100	68.041	MGP_PahariEiJ_G0031543	Upf3b	100	68.247	Mus_pahari
ENSTBEG00000003229	UPF3B	100	68.866	MGP_SPRETEiJ_G0034152	Upf3b	100	69.072	Mus_spretus
ENSTBEG00000003229	UPF3B	98	76.483	ENSMPUG00000001531	UPF3B	100	76.907	Mustela_putorius_furo
ENSTBEG00000003229	UPF3B	100	75.569	ENSMLUG00000010821	UPF3B	100	75.983	Myotis_lucifugus
ENSTBEG00000003229	UPF3B	100	67.216	ENSNGAG00000008231	Upf3b	100	68.041	Nannospalax_galili
ENSTBEG00000003229	UPF3B	97	78.298	ENSNLEG00000014897	UPF3B	100	78.675	Nomascus_leucogenys
ENSTBEG00000003229	UPF3B	55	64.516	ENSMEUG00000015615	UPF3B	71	64.744	Notamacropus_eugenii
ENSTBEG00000003229	UPF3B	100	69.565	ENSODEG00000002186	-	100	69.772	Octodon_degus
ENSTBEG00000003229	UPF3B	80	58.608	ENSONIG00000002536	upf3b	100	47.879	Oreochromis_niloticus
ENSTBEG00000003229	UPF3B	89	50.569	ENSOANG00000002594	-	75	64.968	Ornithorhynchus_anatinus
ENSTBEG00000003229	UPF3B	100	78.882	ENSOCUG00000010213	UPF3B	100	78.882	Oryctolagus_cuniculus
ENSTBEG00000003229	UPF3B	76	56.364	ENSORLG00000001026	upf3b	96	47.257	Oryzias_latipes
ENSTBEG00000003229	UPF3B	76	55.596	ENSORLG00020003758	upf3b	96	46.849	Oryzias_latipes_hni
ENSTBEG00000003229	UPF3B	76	56.000	ENSORLG00015012954	upf3b	96	47.257	Oryzias_latipes_hsok
ENSTBEG00000003229	UPF3B	65	60.987	ENSOMEG00000014736	upf3b	96	47.890	Oryzias_melastigma
ENSTBEG00000003229	UPF3B	98	62.448	ENSOGAG00000033003	-	100	62.448	Otolemur_garnettii
ENSTBEG00000003229	UPF3B	100	75.776	ENSOGAG00000004643	-	100	76.190	Otolemur_garnettii
ENSTBEG00000003229	UPF3B	100	78.807	ENSOARG00000016051	-	100	78.807	Ovis_aries
ENSTBEG00000003229	UPF3B	90	54.214	ENSOARG00000007869	-	99	51.364	Ovis_aries
ENSTBEG00000003229	UPF3B	100	79.089	ENSPPAG00000040390	UPF3B	100	83.271	Pan_paniscus
ENSTBEG00000003229	UPF3B	100	78.882	ENSPPRG00000023536	UPF3B	100	78.882	Panthera_pardus
ENSTBEG00000003229	UPF3B	100	75.252	ENSPTIG00000015264	UPF3B	100	83.271	Panthera_tigris_altaica
ENSTBEG00000003229	UPF3B	100	79.089	ENSPTRG00000022228	UPF3B	100	83.271	Pan_troglodytes
ENSTBEG00000003229	UPF3B	100	78.882	ENSPANG00000000900	UPF3B	100	83.271	Papio_anubis
ENSTBEG00000003229	UPF3B	69	61.966	ENSPKIG00000019226	upf3b	74	78.261	Paramormyrops_kingsleyae
ENSTBEG00000003229	UPF3B	56	53.285	ENSPSIG00000005833	UPF3B	92	53.137	Pelodiscus_sinensis
ENSTBEG00000003229	UPF3B	56	58.608	ENSPMGG00000016067	upf3b	94	57.971	Periophthalmus_magnuspinnatus
ENSTBEG00000003229	UPF3B	100	72.634	ENSPEMG00000012352	Upf3b	100	72.840	Peromyscus_maniculatus_bairdii
ENSTBEG00000003229	UPF3B	74	76.866	ENSPCIG00000028914	UPF3B	74	82.500	Phascolarctos_cinereus
ENSTBEG00000003229	UPF3B	72	46.522	ENSPCIG00000019590	-	54	66.129	Phascolarctos_cinereus
ENSTBEG00000003229	UPF3B	93	47.912	ENSPLAG00000005105	upf3b	94	47.516	Poecilia_latipinna
ENSTBEG00000003229	UPF3B	93	47.912	ENSPLAG00000019922	upf3b	94	47.516	Poecilia_latipinna
ENSTBEG00000003229	UPF3B	60	54.601	ENSPLAG00000011960	upf3a	54	77.419	Poecilia_latipinna
ENSTBEG00000003229	UPF3B	93	48.132	ENSPMEG00000023532	upf3b	94	48.140	Poecilia_mexicana
ENSTBEG00000003229	UPF3B	69	85.714	ENSPPYG00000020675	-	100	85.714	Pongo_abelii
ENSTBEG00000003229	UPF3B	100	77.433	ENSPCAG00000009464	UPF3B	100	77.433	Procavia_capensis
ENSTBEG00000003229	UPF3B	100	78.926	ENSPCOG00000021960	UPF3B	100	90.000	Propithecus_coquereli
ENSTBEG00000003229	UPF3B	100	80.952	ENSPVAG00000014075	UPF3B	100	80.952	Pteropus_vampyrus
ENSTBEG00000003229	UPF3B	94	47.722	ENSPNYG00000009846	upf3b	94	48.590	Pundamilia_nyererei
ENSTBEG00000003229	UPF3B	79	56.934	ENSPNAG00000021528	upf3b	99	47.143	Pygocentrus_nattereri
ENSTBEG00000003229	UPF3B	100	72.165	ENSRNOG00000039994	Upf3b	100	72.371	Rattus_norvegicus
ENSTBEG00000003229	UPF3B	82	75.567	ENSRBIG00000037219	UPF3B	100	75.567	Rhinopithecus_bieti
ENSTBEG00000003229	UPF3B	100	79.089	ENSRROG00000041031	UPF3B	100	83.271	Rhinopithecus_roxellana
ENSTBEG00000003229	UPF3B	100	79.089	ENSSBOG00000019740	UPF3B	100	82.900	Saimiri_boliviensis_boliviensis
ENSTBEG00000003229	UPF3B	58	51.250	ENSSHAG00000009895	UPF3A	58	51.250	Sarcophilus_harrisii
ENSTBEG00000003229	UPF3B	88	59.397	ENSSHAG00000008634	UPF3B	99	56.289	Sarcophilus_harrisii
ENSTBEG00000003229	UPF3B	80	58.608	ENSSFOG00015005614	upf3b	100	48.980	Scleropages_formosus
ENSTBEG00000003229	UPF3B	72	57.143	ENSSMAG00000012913	upf3b	84	57.664	Scophthalmus_maximus
ENSTBEG00000003229	UPF3B	51	55.215	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSTBEG00000003229	UPF3B	56	56.410	ENSSDUG00000005682	upf3b	94	47.639	Seriola_dumerili
ENSTBEG00000003229	UPF3B	75	56.777	ENSSLDG00000003130	upf3b	94	47.639	Seriola_lalandi_dorsalis
ENSTBEG00000003229	UPF3B	89	70.737	ENSSARG00000004147	UPF3B	100	70.737	Sorex_araneus
ENSTBEG00000003229	UPF3B	80	74.843	ENSSPUG00000013082	UPF3B	81	74.843	Sphenodon_punctatus
ENSTBEG00000003229	UPF3B	51	55.215	ENSSPAG00000007938	upf3a	72	54.140	Stegastes_partitus
ENSTBEG00000003229	UPF3B	94	46.767	ENSSPAG00000009989	upf3b	94	47.414	Stegastes_partitus
ENSTBEG00000003229	UPF3B	100	76.812	ENSSSCG00000012617	UPF3B	100	76.812	Sus_scrofa
ENSTBEG00000003229	UPF3B	54	55.488	ENSTGUG00000009493	UPF3A	55	55.488	Taeniopygia_guttata
ENSTBEG00000003229	UPF3B	89	57.955	ENSTGUG00000003413	UPF3B	99	58.409	Taeniopygia_guttata
ENSTBEG00000003229	UPF3B	87	47.196	ENSTRUG00000010645	upf3b	98	46.331	Takifugu_rubripes
ENSTBEG00000003229	UPF3B	63	59.091	ENSTNIG00000015763	upf3b	56	59.195	Tetraodon_nigroviridis
ENSTBEG00000003229	UPF3B	100	74.433	ENSUAMG00000024565	UPF3B	100	93.805	Ursus_americanus
ENSTBEG00000003229	UPF3B	74	81.208	ENSUMAG00000002150	UPF3B	81	81.208	Ursus_maritimus
ENSTBEG00000003229	UPF3B	85	76.829	ENSVPAG00000009971	UPF3B	100	76.829	Vicugna_pacos
ENSTBEG00000003229	UPF3B	100	75.155	ENSVVUG00000011594	UPF3B	100	95.726	Vulpes_vulpes
ENSTBEG00000003229	UPF3B	87	44.804	ENSXETG00000007440	upf3b	74	61.988	Xenopus_tropicalis
ENSTBEG00000003229	UPF3B	72	55.124	ENSXCOG00000016586	upf3b	93	64.968	Xiphophorus_couchianus
ENSTBEG00000003229	UPF3B	70	52.632	ENSXMAG00000013680	upf3b	94	46.608	Xiphophorus_maculatus