EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000003256 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Minus strand
Length: 214858 bases
Position: chrGeneScaffold_1488:11702-226559
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000002869	XRN_N	PF03159.18	4.8e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000003314	XRN1-201	4914	-	ENSTBEP00000002869	1637 (aa)	-	UPI0000F5EF6F

Gene Model

Click here to download ENSTBEG00000003256's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000003256's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000003256	XRN1	89	87.241	ENSG00000114127	XRN1	100	96.364	Homo_sapiens
ENSTBEG00000003256	XRN1	75	82.005	ENSAPOG00000000622	xrn1	78	82.787	Acanthochromis_polyacanthus
ENSTBEG00000003256	XRN1	84	96.226	ENSAMEG00000012538	XRN1	85	96.226	Ailuropoda_melanoleuca
ENSTBEG00000003256	XRN1	78	82.609	ENSACIG00000001057	xrn1	78	84.450	Amphilophus_citrinellus
ENSTBEG00000003256	XRN1	88	71.406	ENSAOCG00000014097	xrn1	86	82.787	Amphiprion_ocellaris
ENSTBEG00000003256	XRN1	88	71.406	ENSAPEG00000006620	xrn1	79	84.677	Amphiprion_percula
ENSTBEG00000003256	XRN1	83	69.219	ENSATEG00000009752	xrn1	76	79.625	Anabas_testudineus
ENSTBEG00000003256	XRN1	87	79.734	ENSAPLG00000004905	XRN1	76	91.618	Anas_platyrhynchos
ENSTBEG00000003256	XRN1	85	89.948	ENSACAG00000004985	XRN1	76	91.105	Anolis_carolinensis
ENSTBEG00000003256	XRN1	89	87.560	ENSANAG00000029013	XRN1	84	97.844	Aotus_nancymaae
ENSTBEG00000003256	XRN1	88	71.086	ENSACLG00000004806	xrn1	81	83.602	Astatotilapia_calliptera
ENSTBEG00000003256	XRN1	84	81.748	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSTBEG00000003256	XRN1	84	97.844	ENSBTAG00000011524	XRN1	84	97.844	Bos_taurus
ENSTBEG00000003256	XRN1	53	62.466	WBGene00012730	xrn-1	57	62.567	Caenorhabditis_elegans
ENSTBEG00000003256	XRN1	89	87.241	ENSCJAG00000001872	XRN1	84	97.305	Callithrix_jacchus
ENSTBEG00000003256	XRN1	85	96.419	ENSCAFG00000007783	XRN1	85	97.035	Canis_familiaris
ENSTBEG00000003256	XRN1	89	86.922	ENSCAFG00020009120	XRN1	91	94.382	Canis_lupus_dingo
ENSTBEG00000003256	XRN1	84	97.844	ENSCHIG00000019192	XRN1	85	97.844	Capra_hircus
ENSTBEG00000003256	XRN1	84	97.035	ENSTSYG00000002705	XRN1	84	97.035	Carlito_syrichta
ENSTBEG00000003256	XRN1	57	66.445	ENSCAPG00000004604	-	99	66.445	Cavia_aperea
ENSTBEG00000003256	XRN1	89	87.879	ENSCCAG00000034800	XRN1	99	87.879	Cebus_capucinus
ENSTBEG00000003256	XRN1	89	87.719	ENSCATG00000041794	XRN1	84	97.844	Cercocebus_atys
ENSTBEG00000003256	XRN1	84	97.844	ENSCLAG00000001451	XRN1	99	86.603	Chinchilla_lanigera
ENSTBEG00000003256	XRN1	89	87.719	ENSCSAG00000011265	XRN1	84	97.844	Chlorocebus_sabaeus
ENSTBEG00000003256	XRN1	55	70.604	ENSCSAVG00000008584	-	76	70.604	Ciona_savignyi
ENSTBEG00000003256	XRN1	89	87.719	ENSCANG00000037495	XRN1	99	87.719	Colobus_angolensis_palliatus
ENSTBEG00000003256	XRN1	89	86.762	ENSCGRG00001019411	Xrn1	91	97.305	Cricetulus_griseus_chok1gshd
ENSTBEG00000003256	XRN1	89	86.762	ENSCGRG00000012464	Xrn1	91	97.305	Cricetulus_griseus_crigri
ENSTBEG00000003256	XRN1	76	84.474	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSTBEG00000003256	XRN1	59	85.753	ENSCVAG00000013089	xrn1	89	85.753	Cyprinodon_variegatus
ENSTBEG00000003256	XRN1	83	86.828	ENSDARG00000091652	xrn1	82	82.784	Danio_rerio
ENSTBEG00000003256	XRN1	84	95.957	ENSDORG00000013833	Xrn1	84	95.957	Dipodomys_ordii
ENSTBEG00000003256	XRN1	59	60.989	FBgn0020261	pcm	60	60.989	Drosophila_melanogaster
ENSTBEG00000003256	XRN1	67	100.000	ENSETEG00000003978	XRN1	70	99.194	Echinops_telfairi
ENSTBEG00000003256	XRN1	89	86.762	ENSEASG00005002687	XRN1	90	97.382	Equus_asinus_asinus
ENSTBEG00000003256	XRN1	89	86.762	ENSECAG00000008301	XRN1	85	97.305	Equus_caballus
ENSTBEG00000003256	XRN1	69	97.354	ENSEEUG00000011323	XRN1	70	97.354	Erinaceus_europaeus
ENSTBEG00000003256	XRN1	83	86.022	ENSELUG00000000169	xrn1	76	86.022	Esox_lucius
ENSTBEG00000003256	XRN1	84	93.678	ENSFCAG00000027589	XRN1	85	96.675	Felis_catus
ENSTBEG00000003256	XRN1	84	91.105	ENSFALG00000007021	XRN1	85	91.105	Ficedula_albicollis
ENSTBEG00000003256	XRN1	84	97.305	ENSFDAG00000020494	XRN1	99	86.560	Fukomys_damarensis
ENSTBEG00000003256	XRN1	75	84.399	ENSGMOG00000006396	xrn1	66	85.484	Gadus_morhua
ENSTBEG00000003256	XRN1	89	80.223	ENSGALG00000002706	XRN1	85	91.375	Gallus_gallus
ENSTBEG00000003256	XRN1	87	70.927	ENSGACG00000014328	xrn1	75	83.602	Gasterosteus_aculeatus
ENSTBEG00000003256	XRN1	83	79.426	ENSGAGG00000017535	XRN1	80	91.105	Gopherus_agassizii
ENSTBEG00000003256	XRN1	89	87.241	ENSGGOG00000008047	XRN1	84	97.574	Gorilla_gorilla
ENSTBEG00000003256	XRN1	84	79.028	ENSHBUG00000005908	xrn1	84	80.429	Haplochromis_burtoni
ENSTBEG00000003256	XRN1	84	97.305	ENSHGLG00000014476	XRN1	99	86.922	Heterocephalus_glaber_female
ENSTBEG00000003256	XRN1	84	97.305	ENSHGLG00100015130	XRN1	99	86.922	Heterocephalus_glaber_male
ENSTBEG00000003256	XRN1	75	71.701	ENSHCOG00000014062	xrn1	72	84.946	Hippocampus_comes
ENSTBEG00000003256	XRN1	88	73.163	ENSIPUG00000015229	xrn1	76	87.097	Ictalurus_punctatus
ENSTBEG00000003256	XRN1	84	97.574	ENSSTOG00000013552	XRN1	99	87.400	Ictidomys_tridecemlineatus
ENSTBEG00000003256	XRN1	82	96.812	ENSJJAG00000010863	Xrn1	99	86.213	Jaculus_jaculus
ENSTBEG00000003256	XRN1	78	83.679	ENSKMAG00000021356	xrn1	78	84.677	Kryptolebias_marmoratus
ENSTBEG00000003256	XRN1	78	83.077	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSTBEG00000003256	XRN1	88	76.518	ENSLACG00000009020	XRN1	76	88.441	Latimeria_chalumnae
ENSTBEG00000003256	XRN1	85	85.969	ENSLOCG00000007944	xrn1	83	87.097	Lepisosteus_oculatus
ENSTBEG00000003256	XRN1	61	86.762	ENSLAFG00000015426	XRN1	93	86.762	Loxodonta_africana
ENSTBEG00000003256	XRN1	89	87.719	ENSMFAG00000032599	XRN1	84	97.844	Macaca_fascicularis
ENSTBEG00000003256	XRN1	89	87.719	ENSMMUG00000014038	XRN1	84	97.844	Macaca_mulatta
ENSTBEG00000003256	XRN1	89	87.560	ENSMNEG00000034217	XRN1	84	97.574	Macaca_nemestrina
ENSTBEG00000003256	XRN1	77	85.039	ENSMAMG00000013219	xrn1	82	85.215	Mastacembelus_armatus
ENSTBEG00000003256	XRN1	88	71.406	ENSMZEG00005015099	xrn1	81	83.871	Maylandia_zebra
ENSTBEG00000003256	XRN1	87	75.662	ENSMGAG00000006333	XRN1	76	84.270	Meleagris_gallopavo
ENSTBEG00000003256	XRN1	84	96.765	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSTBEG00000003256	XRN1	60	85.965	ENSMOCG00000008665	Xrn1	91	97.305	Microtus_ochrogaster
ENSTBEG00000003256	XRN1	88	82.080	ENSMODG00000021236	XRN1	75	94.609	Monodelphis_domestica
ENSTBEG00000003256	XRN1	77	83.333	ENSMALG00000004098	xrn1	82	83.333	Monopterus_albus
ENSTBEG00000003256	XRN1	89	85.965	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSTBEG00000003256	XRN1	89	85.965	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSTBEG00000003256	XRN1	89	86.124	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSTBEG00000003256	XRN1	89	85.965	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSTBEG00000003256	XRN1	84	97.035	ENSMPUG00000012040	XRN1	84	97.035	Mustela_putorius_furo
ENSTBEG00000003256	XRN1	89	86.284	ENSMLUG00000016885	XRN1	85	96.496	Myotis_lucifugus
ENSTBEG00000003256	XRN1	59	81.440	ENSNGAG00000023964	Xrn1	99	81.440	Nannospalax_galili
ENSTBEG00000003256	XRN1	89	87.879	ENSNLEG00000004726	XRN1	84	97.844	Nomascus_leucogenys
ENSTBEG00000003256	XRN1	64	98.969	ENSMEUG00000014473	-	56	99.029	Notamacropus_eugenii
ENSTBEG00000003256	XRN1	68	92.105	ENSOPRG00000007337	-	65	92.105	Ochotona_princeps
ENSTBEG00000003256	XRN1	85	83.333	ENSONIG00000016673	xrn1	83	84.946	Oreochromis_niloticus
ENSTBEG00000003256	XRN1	80	77.846	ENSOANG00000006735	XRN1	84	92.797	Ornithorhynchus_anatinus
ENSTBEG00000003256	XRN1	84	97.574	ENSOCUG00000001861	XRN1	85	97.574	Oryctolagus_cuniculus
ENSTBEG00000003256	XRN1	82	73.046	ENSORLG00000013005	xrn1	74	85.215	Oryzias_latipes
ENSTBEG00000003256	XRN1	77	84.777	ENSORLG00020005559	xrn1	80	85.215	Oryzias_latipes_hni
ENSTBEG00000003256	XRN1	77	84.252	ENSORLG00015022523	xrn1	74	84.677	Oryzias_latipes_hsok
ENSTBEG00000003256	XRN1	82	72.045	ENSOMEG00000015397	xrn1	73	85.753	Oryzias_melastigma
ENSTBEG00000003256	XRN1	84	97.574	ENSOGAG00000000170	XRN1	84	97.574	Otolemur_garnettii
ENSTBEG00000003256	XRN1	84	98.113	ENSOARG00000006343	XRN1	85	98.113	Ovis_aries
ENSTBEG00000003256	XRN1	89	86.762	ENSPPAG00000010180	XRN1	84	97.035	Pan_paniscus
ENSTBEG00000003256	XRN1	84	97.035	ENSPPRG00000007125	XRN1	84	97.035	Panthera_pardus
ENSTBEG00000003256	XRN1	84	96.765	ENSPTIG00000021081	XRN1	84	96.765	Panthera_tigris_altaica
ENSTBEG00000003256	XRN1	89	86.762	ENSPTRG00000015482	XRN1	84	97.035	Pan_troglodytes
ENSTBEG00000003256	XRN1	89	87.719	ENSPANG00000010638	XRN1	84	97.844	Papio_anubis
ENSTBEG00000003256	XRN1	89	79.809	ENSPSIG00000018050	XRN1	85	90.591	Pelodiscus_sinensis
ENSTBEG00000003256	XRN1	54	86.559	ENSPMGG00000002648	xrn1	90	86.559	Periophthalmus_magnuspinnatus
ENSTBEG00000003256	XRN1	60	86.124	ENSPEMG00000020610	Xrn1	99	86.124	Peromyscus_maniculatus_bairdii
ENSTBEG00000003256	XRN1	51	77.011	ENSPMAG00000002975	xrn1	72	77.011	Petromyzon_marinus
ENSTBEG00000003256	XRN1	80	93.299	ENSPCIG00000028735	XRN1	92	93.531	Phascolarctos_cinereus
ENSTBEG00000003256	XRN1	78	84.615	ENSPFOG00000013932	xrn1	82	84.946	Poecilia_formosa
ENSTBEG00000003256	XRN1	78	84.881	ENSPLAG00000021653	xrn1	82	85.215	Poecilia_latipinna
ENSTBEG00000003256	XRN1	76	83.333	ENSPMEG00000003076	xrn1	78	84.677	Poecilia_mexicana
ENSTBEG00000003256	XRN1	85	82.564	ENSPREG00000021147	xrn1	81	84.677	Poecilia_reticulata
ENSTBEG00000003256	XRN1	89	87.560	ENSPPYG00000014172	XRN1	84	97.844	Pongo_abelii
ENSTBEG00000003256	XRN1	75	94.737	ENSPCAG00000005638	XRN1	75	95.954	Procavia_capensis
ENSTBEG00000003256	XRN1	84	97.035	ENSPCOG00000013089	XRN1	99	86.443	Propithecus_coquereli
ENSTBEG00000003256	XRN1	78	96.774	ENSPVAG00000016265	XRN1	79	95.942	Pteropus_vampyrus
ENSTBEG00000003256	XRN1	88	71.246	ENSPNYG00000010570	xrn1	80	83.871	Pundamilia_nyererei
ENSTBEG00000003256	XRN1	73	80.818	ENSPNAG00000023531	xrn1	72	81.551	Pygocentrus_nattereri
ENSTBEG00000003256	XRN1	89	85.965	ENSRNOG00000042951	Xrn1	85	97.305	Rattus_norvegicus
ENSTBEG00000003256	XRN1	89	87.400	ENSRBIG00000041227	XRN1	84	97.844	Rhinopithecus_bieti
ENSTBEG00000003256	XRN1	53	53.406	YGL173C	XRN1	56	53.406	Saccharomyces_cerevisiae
ENSTBEG00000003256	XRN1	89	87.719	ENSSBOG00000029561	XRN1	84	97.574	Saimiri_boliviensis_boliviensis
ENSTBEG00000003256	XRN1	87	81.833	ENSSHAG00000016207	XRN1	85	93.931	Sarcophilus_harrisii
ENSTBEG00000003256	XRN1	82	71.725	ENSSFOG00015024211	xrn1	83	85.753	Scleropages_formosus
ENSTBEG00000003256	XRN1	87	72.843	ENSSMAG00000016534	xrn1	79	85.484	Scophthalmus_maximus
ENSTBEG00000003256	XRN1	76	83.418	ENSSDUG00000010306	xrn1	71	85.484	Seriola_dumerili
ENSTBEG00000003256	XRN1	79	83.418	ENSSLDG00000021543	xrn1	85	85.484	Seriola_lalandi_dorsalis
ENSTBEG00000003256	XRN1	56	83.167	ENSSARG00000007741	-	61	94.220	Sorex_araneus
ENSTBEG00000003256	XRN1	84	91.375	ENSTGUG00000008498	XRN1	85	91.375	Taeniopygia_guttata
ENSTBEG00000003256	XRN1	77	83.905	ENSTRUG00000004895	xrn1	84	84.140	Takifugu_rubripes
ENSTBEG00000003256	XRN1	75	83.598	ENSTNIG00000017615	xrn1	74	83.646	Tetraodon_nigroviridis
ENSTBEG00000003256	XRN1	82	93.258	ENSTTRG00000012914	XRN1	82	93.258	Tursiops_truncatus
ENSTBEG00000003256	XRN1	84	95.506	ENSUAMG00000001608	XRN1	91	95.506	Ursus_americanus
ENSTBEG00000003256	XRN1	84	97.035	ENSUMAG00000013625	XRN1	85	97.035	Ursus_maritimus
ENSTBEG00000003256	XRN1	89	87.400	ENSVPAG00000004690	XRN1	89	87.400	Vicugna_pacos
ENSTBEG00000003256	XRN1	84	97.305	ENSVVUG00000024461	XRN1	90	96.931	Vulpes_vulpes
ENSTBEG00000003256	XRN1	84	89.544	ENSXETG00000000619	xrn1	97	87.634	Xenopus_tropicalis
ENSTBEG00000003256	XRN1	84	84.777	ENSXCOG00000007917	xrn1	81	85.215	Xiphophorus_couchianus
ENSTBEG00000003256	XRN1	81	84.881	ENSXMAG00000018320	xrn1	79	85.215	Xiphophorus_maculatus