EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000005872 (Gene tree)
Gene ID: -
Gene Symbol: LIN28B
Alias: CSDD2|FLJ16517
Full Name: lin-28 homolog B
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Plus strand
Length: 88121 bases
Position: chrGeneScaffold_621:205115-293235
Accession: 32207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000005040	CSD	PF00313.22	9.8e-05	1	1
ENSTBEP00000005040	zf-CCHC	PF00098.23	1e-08	1	2
ENSTBEP00000005040	zf-CCHC	PF00098.23	1e-08	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000005854	LIN28B-201	750	-	ENSTBEP00000005040	249 (aa)	-	UPI0000F5FE2F

Gene Model

Click here to download ENSTBEG00000005872's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000005872's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000005872	LIN28B	73	91.304	ENSG00000187772	LIN28B	74	91.304	Homo_sapiens
ENSTBEG00000005872	LIN28B	73	61.622	ENSAPOG00000014016	lin28b	67	61.622	Acanthochromis_polyacanthus
ENSTBEG00000005872	LIN28B	73	90.217	ENSAMEG00000011453	LIN28B	74	91.848	Ailuropoda_melanoleuca
ENSTBEG00000005872	LIN28B	73	61.622	ENSACIG00000009818	lin28b	67	61.622	Amphilophus_citrinellus
ENSTBEG00000005872	LIN28B	73	82.065	ENSACAG00000003957	LIN28B	68	82.065	Anolis_carolinensis
ENSTBEG00000005872	LIN28B	73	89.674	ENSANAG00000036677	-	74	89.674	Aotus_nancymaae
ENSTBEG00000005872	LIN28B	73	88.587	ENSANAG00000032418	-	74	88.587	Aotus_nancymaae
ENSTBEG00000005872	LIN28B	73	57.219	ENSAMXG00000001888	lin28b	71	57.219	Astyanax_mexicanus
ENSTBEG00000005872	LIN28B	73	87.500	ENSBTAG00000043973	LIN28B	73	87.500	Bos_taurus
ENSTBEG00000005872	LIN28B	73	90.217	ENSCJAG00000001671	LIN28B	74	90.217	Callithrix_jacchus
ENSTBEG00000005872	LIN28B	73	86.022	ENSCAFG00000003598	LIN28B	74	86.022	Canis_familiaris
ENSTBEG00000005872	LIN28B	73	86.022	ENSCAFG00020017606	LIN28B	74	86.022	Canis_lupus_dingo
ENSTBEG00000005872	LIN28B	73	88.043	ENSCHIG00000011133	LIN28B	87	88.043	Capra_hircus
ENSTBEG00000005872	LIN28B	73	90.761	ENSTSYG00000006480	-	74	90.761	Carlito_syrichta
ENSTBEG00000005872	LIN28B	73	83.060	ENSTSYG00000032245	-	65	83.060	Carlito_syrichta
ENSTBEG00000005872	LIN28B	73	85.326	ENSCAPG00000009019	LIN28B	76	86.413	Cavia_aperea
ENSTBEG00000005872	LIN28B	73	85.326	ENSCPOG00000006178	LIN28B	74	86.413	Cavia_porcellus
ENSTBEG00000005872	LIN28B	73	90.761	ENSCCAG00000020904	LIN28B	74	90.761	Cebus_capucinus
ENSTBEG00000005872	LIN28B	73	89.130	ENSCATG00000037900	LIN28B	73	89.130	Cercocebus_atys
ENSTBEG00000005872	LIN28B	73	92.391	ENSCLAG00000010534	LIN28B	74	92.391	Chinchilla_lanigera
ENSTBEG00000005872	LIN28B	73	89.130	ENSCSAG00000014708	LIN28B	88	89.130	Chlorocebus_sabaeus
ENSTBEG00000005872	LIN28B	73	83.696	ENSCPBG00000004104	LIN28B	74	83.696	Chrysemys_picta_bellii
ENSTBEG00000005872	LIN28B	73	88.587	ENSCANG00000011024	LIN28B	73	88.587	Colobus_angolensis_palliatus
ENSTBEG00000005872	LIN28B	73	74.396	ENSCGRG00001024078	Lin28b	76	74.396	Cricetulus_griseus_chok1gshd
ENSTBEG00000005872	LIN28B	73	74.396	ENSCGRG00000014674	Lin28b	76	74.396	Cricetulus_griseus_crigri
ENSTBEG00000005872	LIN28B	73	63.243	ENSCSEG00000000312	lin28b	71	63.243	Cynoglossus_semilaevis
ENSTBEG00000005872	LIN28B	50	78.400	ENSCVAG00000001868	lin28b	71	62.162	Cyprinodon_variegatus
ENSTBEG00000005872	LIN28B	50	75.200	ENSDARG00000052511	lin28b	70	66.447	Danio_rerio
ENSTBEG00000005872	LIN28B	73	89.674	ENSDNOG00000015300	LIN28B	74	89.674	Dasypus_novemcinctus
ENSTBEG00000005872	LIN28B	73	88.587	ENSDORG00000009587	-	73	88.587	Dipodomys_ordii
ENSTBEG00000005872	LIN28B	73	86.957	ENSDORG00000023330	-	74	86.957	Dipodomys_ordii
ENSTBEG00000005872	LIN28B	52	53.383	ENSDORG00000005491	-	66	53.383	Dipodomys_ordii
ENSTBEG00000005872	LIN28B	73	85.870	ENSETEG00000015340	LIN28B	74	85.870	Echinops_telfairi
ENSTBEG00000005872	LIN28B	73	89.674	ENSEASG00005006422	LIN28B	74	90.217	Equus_asinus_asinus
ENSTBEG00000005872	LIN28B	73	89.674	ENSECAG00000020994	LIN28B	72	89.674	Equus_caballus
ENSTBEG00000005872	LIN28B	73	86.022	ENSEEUG00000003632	LIN28B	74	86.022	Erinaceus_europaeus
ENSTBEG00000005872	LIN28B	73	89.130	ENSFCAG00000044308	LIN28B	74	89.130	Felis_catus
ENSTBEG00000005872	LIN28B	73	89.130	ENSFDAG00000006141	LIN28B	74	89.130	Fukomys_damarensis
ENSTBEG00000005872	LIN28B	50	78.400	ENSFHEG00000022590	lin28b	65	67.059	Fundulus_heteroclitus
ENSTBEG00000005872	LIN28B	73	83.696	ENSGALG00000026761	LIN28B	74	83.696	Gallus_gallus
ENSTBEG00000005872	LIN28B	50	76.800	ENSGAFG00000013047	lin28b	72	65.882	Gambusia_affinis
ENSTBEG00000005872	LIN28B	50	76.190	ENSGACG00000009428	lin28b	72	62.703	Gasterosteus_aculeatus
ENSTBEG00000005872	LIN28B	73	83.696	ENSGAGG00000004857	LIN28B	74	83.696	Gopherus_agassizii
ENSTBEG00000005872	LIN28B	73	91.304	ENSGGOG00000015437	LIN28B	74	91.304	Gorilla_gorilla
ENSTBEG00000005872	LIN28B	73	80.435	ENSHGLG00000007160	-	74	80.435	Heterocephalus_glaber_female
ENSTBEG00000005872	LIN28B	73	79.327	ENSHGLG00000002468	-	76	79.327	Heterocephalus_glaber_female
ENSTBEG00000005872	LIN28B	73	80.435	ENSHGLG00100001729	-	74	80.435	Heterocephalus_glaber_male
ENSTBEG00000005872	LIN28B	73	79.327	ENSHGLG00100014464	-	100	79.327	Heterocephalus_glaber_male
ENSTBEG00000005872	LIN28B	73	81.250	ENSSTOG00000002692	LIN28B	76	81.731	Ictidomys_tridecemlineatus
ENSTBEG00000005872	LIN28B	52	72.388	ENSSTOG00000004329	-	63	72.388	Ictidomys_tridecemlineatus
ENSTBEG00000005872	LIN28B	73	80.328	ENSJJAG00000011024	Lin28b	72	80.328	Jaculus_jaculus
ENSTBEG00000005872	LIN28B	50	80.952	ENSLBEG00000019319	lin28b	67	65.217	Labrus_bergylta
ENSTBEG00000005872	LIN28B	73	81.183	ENSLACG00000004053	LIN28B	67	81.183	Latimeria_chalumnae
ENSTBEG00000005872	LIN28B	73	75.000	ENSLOCG00000016539	lin28b	73	75.000	Lepisosteus_oculatus
ENSTBEG00000005872	LIN28B	73	89.130	ENSLAFG00000017788	LIN28B	74	89.130	Loxodonta_africana
ENSTBEG00000005872	LIN28B	73	89.130	ENSMFAG00000013463	LIN28B	73	89.130	Macaca_fascicularis
ENSTBEG00000005872	LIN28B	73	89.130	ENSMMUG00000014470	LIN28B	73	89.130	Macaca_mulatta
ENSTBEG00000005872	LIN28B	73	89.130	ENSMNEG00000038148	LIN28B	73	89.130	Macaca_nemestrina
ENSTBEG00000005872	LIN28B	73	89.130	ENSMLEG00000028886	LIN28B	73	89.130	Mandrillus_leucophaeus
ENSTBEG00000005872	LIN28B	51	69.697	ENSMAMG00000007271	si:ch1073-284b18.2	57	79.646	Mastacembelus_armatus
ENSTBEG00000005872	LIN28B	56	72.662	ENSMGAG00000009456	LIN28A	63	72.662	Meleagris_gallopavo
ENSTBEG00000005872	LIN28B	73	71.739	ENSMGAG00000013531	LIN28B	99	71.739	Meleagris_gallopavo
ENSTBEG00000005872	LIN28B	73	89.674	ENSMICG00000047923	LIN28B	74	90.217	Microcebus_murinus
ENSTBEG00000005872	LIN28B	73	83.696	ENSMOCG00000015558	Lin28b	74	83.696	Microtus_ochrogaster
ENSTBEG00000005872	LIN28B	52	69.630	ENSMMOG00000002137	si:ch1073-284b18.2	53	77.982	Mola_mola
ENSTBEG00000005872	LIN28B	54	71.014	ENSMMOG00000014877	lin28b	53	65.116	Mola_mola
ENSTBEG00000005872	LIN28B	73	69.545	ENSMODG00000018035	LIN28B	75	69.545	Monodelphis_domestica
ENSTBEG00000005872	LIN28B	73	63.587	ENSMALG00000000365	lin28b	71	63.587	Monopterus_albus
ENSTBEG00000005872	LIN28B	73	75.481	MGP_CAROLIEiJ_G0015299	Lin28b	76	75.481	Mus_caroli
ENSTBEG00000005872	LIN28B	73	75.000	ENSMUSG00000063804	Lin28b	76	75.000	Mus_musculus
ENSTBEG00000005872	LIN28B	73	74.519	MGP_PahariEiJ_G0030716	Lin28b	76	74.519	Mus_pahari
ENSTBEG00000005872	LIN28B	73	75.000	MGP_SPRETEiJ_G0016108	Lin28b	76	75.000	Mus_spretus
ENSTBEG00000005872	LIN28B	73	90.217	ENSMPUG00000009489	LIN28B	74	91.848	Mustela_putorius_furo
ENSTBEG00000005872	LIN28B	73	89.130	ENSMLUG00000006883	LIN28B	99	89.130	Myotis_lucifugus
ENSTBEG00000005872	LIN28B	73	88.587	ENSNGAG00000022808	Lin28b	74	88.587	Nannospalax_galili
ENSTBEG00000005872	LIN28B	73	91.304	ENSNLEG00000014146	LIN28B	74	91.304	Nomascus_leucogenys
ENSTBEG00000005872	LIN28B	73	83.696	ENSMEUG00000003066	LIN28B	75	83.696	Notamacropus_eugenii
ENSTBEG00000005872	LIN28B	73	86.413	ENSOPRG00000006333	LIN28B	75	86.413	Ochotona_princeps
ENSTBEG00000005872	LIN28B	51	64.394	ENSODEG00000016070	-	70	64.394	Octodon_degus
ENSTBEG00000005872	LIN28B	73	89.130	ENSODEG00000013568	LIN28B	74	89.130	Octodon_degus
ENSTBEG00000005872	LIN28B	61	79.114	ENSOANG00000010299	LIN28B	65	79.114	Ornithorhynchus_anatinus
ENSTBEG00000005872	LIN28B	73	89.674	ENSOCUG00000017850	LIN28B	88	89.674	Oryctolagus_cuniculus
ENSTBEG00000005872	LIN28B	73	62.162	ENSORLG00000012891	lin28b	71	62.162	Oryzias_latipes
ENSTBEG00000005872	LIN28B	73	62.162	ENSORLG00020013527	lin28b	71	62.162	Oryzias_latipes_hni
ENSTBEG00000005872	LIN28B	73	61.622	ENSORLG00015008232	lin28b	71	61.622	Oryzias_latipes_hsok
ENSTBEG00000005872	LIN28B	52	71.429	ENSOGAG00000003971	LIN28A	63	71.429	Otolemur_garnettii
ENSTBEG00000005872	LIN28B	73	91.304	ENSOGAG00000011042	LIN28B	74	91.848	Otolemur_garnettii
ENSTBEG00000005872	LIN28B	73	88.043	ENSOARG00000011404	LIN28B	66	88.043	Ovis_aries
ENSTBEG00000005872	LIN28B	73	91.304	ENSPPAG00000038725	LIN28B	88	91.304	Pan_paniscus
ENSTBEG00000005872	LIN28B	73	89.674	ENSPPRG00000016158	LIN28B	74	89.674	Panthera_pardus
ENSTBEG00000005872	LIN28B	73	89.674	ENSPTIG00000009405	LIN28B	75	89.674	Panthera_tigris_altaica
ENSTBEG00000005872	LIN28B	73	91.304	ENSPTRG00000018453	LIN28B	74	91.304	Pan_troglodytes
ENSTBEG00000005872	LIN28B	73	89.130	ENSPANG00000032324	-	73	89.130	Papio_anubis
ENSTBEG00000005872	LIN28B	73	89.130	ENSPANG00000005196	-	71	89.130	Papio_anubis
ENSTBEG00000005872	LIN28B	73	69.892	ENSPKIG00000013309	lin28b	70	69.892	Paramormyrops_kingsleyae
ENSTBEG00000005872	LIN28B	73	84.783	ENSPSIG00000002635	LIN28B	74	84.783	Pelodiscus_sinensis
ENSTBEG00000005872	LIN28B	51	71.875	ENSPMGG00000004200	si:ch1073-284b18.2	66	71.875	Periophthalmus_magnuspinnatus
ENSTBEG00000005872	LIN28B	73	86.957	ENSPEMG00000015724	Lin28b	74	86.957	Peromyscus_maniculatus_bairdii
ENSTBEG00000005872	LIN28B	73	84.239	ENSPCIG00000019464	LIN28B	75	84.239	Phascolarctos_cinereus
ENSTBEG00000005872	LIN28B	50	76.800	ENSPFOG00000019352	lin28b	70	61.622	Poecilia_formosa
ENSTBEG00000005872	LIN28B	50	76.800	ENSPLAG00000009101	lin28b	64	65.882	Poecilia_latipinna
ENSTBEG00000005872	LIN28B	50	76.800	ENSPMEG00000015694	lin28b	70	61.622	Poecilia_mexicana
ENSTBEG00000005872	LIN28B	50	76.800	ENSPREG00000006170	lin28b	72	65.882	Poecilia_reticulata
ENSTBEG00000005872	LIN28B	73	90.761	ENSPPYG00000016875	LIN28B	75	90.761	Pongo_abelii
ENSTBEG00000005872	LIN28B	73	91.848	ENSPCOG00000016875	LIN28B	74	92.391	Propithecus_coquereli
ENSTBEG00000005872	LIN28B	73	88.587	ENSPVAG00000008797	LIN28B	67	88.587	Pteropus_vampyrus
ENSTBEG00000005872	LIN28B	73	57.609	ENSPNAG00000002632	lin28b	76	57.609	Pygocentrus_nattereri
ENSTBEG00000005872	LIN28B	73	83.696	ENSRNOG00000025938	Lin28b	74	83.696	Rattus_norvegicus
ENSTBEG00000005872	LIN28B	73	89.674	ENSRBIG00000036241	LIN28B	73	89.674	Rhinopithecus_bieti
ENSTBEG00000005872	LIN28B	73	89.130	ENSRROG00000033602	LIN28B	73	89.130	Rhinopithecus_roxellana
ENSTBEG00000005872	LIN28B	73	90.217	ENSSBOG00000025323	LIN28B	74	90.217	Saimiri_boliviensis_boliviensis
ENSTBEG00000005872	LIN28B	73	83.243	ENSSHAG00000012716	-	99	83.243	Sarcophilus_harrisii
ENSTBEG00000005872	LIN28B	73	69.730	ENSSFOG00015010561	lin28b	63	69.730	Scleropages_formosus
ENSTBEG00000005872	LIN28B	73	85.870	ENSSARG00000008374	LIN28B	74	85.870	Sorex_araneus
ENSTBEG00000005872	LIN28B	73	83.152	ENSSPUG00000013225	LIN28B	73	83.152	Sphenodon_punctatus
ENSTBEG00000005872	LIN28B	73	90.217	ENSSSCG00000037612	LIN28B	70	90.217	Sus_scrofa
ENSTBEG00000005872	LIN28B	73	84.239	ENSTGUG00000012225	LIN28B	74	84.239	Taeniopygia_guttata
ENSTBEG00000005872	LIN28B	50	76.984	ENSTRUG00000019692	lin28b	70	63.388	Takifugu_rubripes
ENSTBEG00000005872	LIN28B	50	77.778	ENSTNIG00000012302	lin28b	71	62.703	Tetraodon_nigroviridis
ENSTBEG00000005872	LIN28B	73	88.587	ENSTTRG00000014919	LIN28B	67	88.587	Tursiops_truncatus
ENSTBEG00000005872	LIN28B	73	90.217	ENSUAMG00000022834	LIN28B	74	91.848	Ursus_americanus
ENSTBEG00000005872	LIN28B	73	90.217	ENSUMAG00000020916	LIN28B	74	91.848	Ursus_maritimus
ENSTBEG00000005872	LIN28B	69	85.549	ENSVPAG00000011202	LIN28B	70	85.549	Vicugna_pacos
ENSTBEG00000005872	LIN28B	73	85.484	ENSVVUG00000003739	LIN28B	74	85.484	Vulpes_vulpes
ENSTBEG00000005872	LIN28B	73	61.957	ENSXETG00000013293	lin28b	72	61.957	Xenopus_tropicalis
ENSTBEG00000005872	LIN28B	50	76.800	ENSXCOG00000004261	lin28b	62	65.882	Xiphophorus_couchianus
ENSTBEG00000005872	LIN28B	50	76.800	ENSXMAG00000003450	lin28b	64	65.882	Xiphophorus_maculatus