EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000011406 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Plus strand
Length: 12898 bases
Position: chrGeneScaffold_4076:780662-793559
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000009855	zf-CCCH	PF00642.24	1e-09	1	1
ENSTBEP00000009855	zf-CCHC	PF00098.23	1.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000011404	CPSF4-201	693	-	ENSTBEP00000009855	230 (aa)	-	UPI0000F60805

Gene Model

Click here to download ENSTBEG00000011406's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000011406's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000011406	CPSF4	100	90.171	ENSG00000160917	CPSF4	100	92.857	Homo_sapiens
ENSTBEG00000011406	CPSF4	77	64.835	ENSAPOG00000004921	cpsf4	100	64.835	Acanthochromis_polyacanthus
ENSTBEG00000011406	CPSF4	100	89.744	ENSAMEG00000006252	CPSF4	87	89.744	Ailuropoda_melanoleuca
ENSTBEG00000011406	CPSF4	100	67.521	ENSACIG00000009248	cpsf4	85	67.949	Amphilophus_citrinellus
ENSTBEG00000011406	CPSF4	100	75.319	ENSAOCG00000019616	cpsf4	87	75.319	Amphiprion_ocellaris
ENSTBEG00000011406	CPSF4	100	75.319	ENSAPEG00000011679	cpsf4	87	75.319	Amphiprion_percula
ENSTBEG00000011406	CPSF4	100	74.684	ENSATEG00000007010	cpsf4	87	74.370	Anabas_testudineus
ENSTBEG00000011406	CPSF4	100	84.615	ENSACAG00000012941	CPSF4	77	84.615	Anolis_carolinensis
ENSTBEG00000011406	CPSF4	100	90.171	ENSANAG00000021360	CPSF4	87	90.171	Aotus_nancymaae
ENSTBEG00000011406	CPSF4	100	74.894	ENSACLG00000010374	cpsf4	87	74.894	Astatotilapia_calliptera
ENSTBEG00000011406	CPSF4	100	75.000	ENSAMXG00000031647	cpsf4	87	75.847	Astyanax_mexicanus
ENSTBEG00000011406	CPSF4	100	75.214	ENSBTAG00000002090	CPSF4	86	76.068	Bos_taurus
ENSTBEG00000011406	CPSF4	100	90.171	ENSCJAG00000015826	CPSF4	87	90.171	Callithrix_jacchus
ENSTBEG00000011406	CPSF4	100	89.316	ENSCAFG00000015036	CPSF4	87	89.316	Canis_familiaris
ENSTBEG00000011406	CPSF4	93	88.532	ENSCAFG00020014462	CPSF4	83	88.532	Canis_lupus_dingo
ENSTBEG00000011406	CPSF4	100	89.316	ENSCHIG00000014313	CPSF4	87	89.316	Capra_hircus
ENSTBEG00000011406	CPSF4	100	77.350	ENSTSYG00000005712	-	86	76.923	Carlito_syrichta
ENSTBEG00000011406	CPSF4	100	71.064	ENSTSYG00000014604	-	86	71.064	Carlito_syrichta
ENSTBEG00000011406	CPSF4	100	72.340	ENSTSYG00000008195	-	92	71.915	Carlito_syrichta
ENSTBEG00000011406	CPSF4	93	88.991	ENSCAPG00000013881	CPSF4	87	88.991	Cavia_aperea
ENSTBEG00000011406	CPSF4	100	77.350	ENSCPOG00000001783	CPSF4	86	76.923	Cavia_porcellus
ENSTBEG00000011406	CPSF4	100	90.171	ENSCCAG00000028291	CPSF4	87	90.171	Cebus_capucinus
ENSTBEG00000011406	CPSF4	100	90.171	ENSCATG00000038440	CPSF4	87	90.171	Cercocebus_atys
ENSTBEG00000011406	CPSF4	100	89.744	ENSCLAG00000007050	CPSF4	87	89.744	Chinchilla_lanigera
ENSTBEG00000011406	CPSF4	100	90.171	ENSCSAG00000017795	CPSF4	87	90.171	Chlorocebus_sabaeus
ENSTBEG00000011406	CPSF4	55	79.231	ENSCPBG00000010269	-	78	79.231	Chrysemys_picta_bellii
ENSTBEG00000011406	CPSF4	92	85.185	ENSCPBG00000020869	CPSF4	100	85.185	Chrysemys_picta_bellii
ENSTBEG00000011406	CPSF4	96	48.908	ENSCING00000021080	-	84	49.115	Ciona_intestinalis
ENSTBEG00000011406	CPSF4	96	46.748	ENSCSAVG00000011469	-	85	46.341	Ciona_savignyi
ENSTBEG00000011406	CPSF4	100	90.171	ENSCANG00000019384	CPSF4	87	90.171	Colobus_angolensis_palliatus
ENSTBEG00000011406	CPSF4	100	77.350	ENSCGRG00001024184	Cpsf4	86	76.923	Cricetulus_griseus_chok1gshd
ENSTBEG00000011406	CPSF4	100	89.744	ENSCGRG00000013892	Cpsf4	87	89.744	Cricetulus_griseus_crigri
ENSTBEG00000011406	CPSF4	100	74.894	ENSCSEG00000019055	cpsf4	87	74.894	Cynoglossus_semilaevis
ENSTBEG00000011406	CPSF4	100	73.617	ENSCVAG00000016528	cpsf4	87	73.617	Cyprinodon_variegatus
ENSTBEG00000011406	CPSF4	100	75.000	ENSDARG00000020217	cpsf4	87	75.000	Danio_rerio
ENSTBEG00000011406	CPSF4	100	89.744	ENSDNOG00000006344	CPSF4	87	89.744	Dasypus_novemcinctus
ENSTBEG00000011406	CPSF4	93	88.479	ENSDORG00000000742	Cpsf4	100	88.479	Dipodomys_ordii
ENSTBEG00000011406	CPSF4	100	50.973	FBgn0015621	Clp	87	50.195	Drosophila_melanogaster
ENSTBEG00000011406	CPSF4	64	100.000	ENSETEG00000002608	CPSF4	57	100.000	Echinops_telfairi
ENSTBEG00000011406	CPSF4	99	61.207	ENSEBUG00000012552	cpsf4	84	59.244	Eptatretus_burgeri
ENSTBEG00000011406	CPSF4	100	77.350	ENSEASG00005002487	CPSF4	86	76.923	Equus_asinus_asinus
ENSTBEG00000011406	CPSF4	100	89.744	ENSECAG00000007525	CPSF4	87	89.744	Equus_caballus
ENSTBEG00000011406	CPSF4	67	97.778	ENSEEUG00000002158	CPSF4	67	97.778	Erinaceus_europaeus
ENSTBEG00000011406	CPSF4	100	72.803	ENSELUG00000011481	cpsf4	87	72.803	Esox_lucius
ENSTBEG00000011406	CPSF4	100	89.744	ENSFCAG00000015070	CPSF4	87	89.744	Felis_catus
ENSTBEG00000011406	CPSF4	100	75.641	ENSFALG00000013799	CPSF4	86	74.786	Ficedula_albicollis
ENSTBEG00000011406	CPSF4	100	89.744	ENSFDAG00000014092	CPSF4	96	89.744	Fukomys_damarensis
ENSTBEG00000011406	CPSF4	100	72.766	ENSFHEG00000010880	cpsf4	87	72.766	Fundulus_heteroclitus
ENSTBEG00000011406	CPSF4	100	67.797	ENSGMOG00000002330	cpsf4	86	66.527	Gadus_morhua
ENSTBEG00000011406	CPSF4	100	75.214	ENSGALG00000004714	CPSF4	86	74.786	Gallus_gallus
ENSTBEG00000011406	CPSF4	70	39.412	ENSGALG00000004441	-	82	38.235	Gallus_gallus
ENSTBEG00000011406	CPSF4	100	72.340	ENSGAFG00000010580	cpsf4	87	72.340	Gambusia_affinis
ENSTBEG00000011406	CPSF4	100	68.220	ENSGACG00000007792	cpsf4	86	68.644	Gasterosteus_aculeatus
ENSTBEG00000011406	CPSF4	100	85.897	ENSGAGG00000021835	CPSF4	87	85.897	Gopherus_agassizii
ENSTBEG00000011406	CPSF4	55	79.231	ENSGAGG00000020579	-	73	79.231	Gopherus_agassizii
ENSTBEG00000011406	CPSF4	100	90.171	ENSGGOG00000015131	CPSF4	87	90.171	Gorilla_gorilla
ENSTBEG00000011406	CPSF4	100	74.894	ENSHBUG00000013699	cpsf4	87	74.894	Haplochromis_burtoni
ENSTBEG00000011406	CPSF4	100	87.712	ENSHGLG00000017150	CPSF4	87	87.712	Heterocephalus_glaber_female
ENSTBEG00000011406	CPSF4	55	57.937	ENSHGLG00100017302	-	54	61.417	Heterocephalus_glaber_male
ENSTBEG00000011406	CPSF4	100	86.017	ENSHGLG00100009215	-	100	86.017	Heterocephalus_glaber_male
ENSTBEG00000011406	CPSF4	100	71.064	ENSHCOG00000004397	cpsf4	87	71.064	Hippocampus_comes
ENSTBEG00000011406	CPSF4	100	74.153	ENSIPUG00000017147	cpsf4	87	75.527	Ictalurus_punctatus
ENSTBEG00000011406	CPSF4	100	89.744	ENSSTOG00000001688	CPSF4	87	89.744	Ictidomys_tridecemlineatus
ENSTBEG00000011406	CPSF4	100	89.744	ENSJJAG00000019426	Cpsf4	87	89.744	Jaculus_jaculus
ENSTBEG00000011406	CPSF4	100	72.340	ENSKMAG00000015642	cpsf4	87	72.340	Kryptolebias_marmoratus
ENSTBEG00000011406	CPSF4	100	79.149	ENSLACG00000010938	CPSF4	87	79.149	Latimeria_chalumnae
ENSTBEG00000011406	CPSF4	100	55.274	ENSLACG00000018470	-	86	54.894	Latimeria_chalumnae
ENSTBEG00000011406	CPSF4	100	79.915	ENSLOCG00000004814	cpsf4	87	79.915	Lepisosteus_oculatus
ENSTBEG00000011406	CPSF4	100	89.744	ENSLAFG00000000159	CPSF4	87	89.744	Loxodonta_africana
ENSTBEG00000011406	CPSF4	100	90.171	ENSMFAG00000001462	CPSF4	87	90.171	Macaca_fascicularis
ENSTBEG00000011406	CPSF4	100	90.171	ENSMMUG00000019191	CPSF4	87	90.171	Macaca_mulatta
ENSTBEG00000011406	CPSF4	100	90.171	ENSMNEG00000032306	CPSF4	87	90.171	Macaca_nemestrina
ENSTBEG00000011406	CPSF4	100	90.171	ENSMLEG00000034721	CPSF4	87	90.171	Mandrillus_leucophaeus
ENSTBEG00000011406	CPSF4	100	74.468	ENSMAMG00000006244	cpsf4	87	74.468	Mastacembelus_armatus
ENSTBEG00000011406	CPSF4	100	74.894	ENSMZEG00005007515	cpsf4	87	74.894	Maylandia_zebra
ENSTBEG00000011406	CPSF4	100	75.214	ENSMGAG00000004235	CPSF4	99	74.786	Meleagris_gallopavo
ENSTBEG00000011406	CPSF4	100	89.744	ENSMAUG00000021253	Cpsf4	87	89.744	Mesocricetus_auratus
ENSTBEG00000011406	CPSF4	100	90.598	ENSMICG00000017429	CPSF4	87	90.598	Microcebus_murinus
ENSTBEG00000011406	CPSF4	100	89.744	ENSMOCG00000014901	Cpsf4	87	89.744	Microtus_ochrogaster
ENSTBEG00000011406	CPSF4	100	74.894	ENSMMOG00000001813	cpsf4	87	74.894	Mola_mola
ENSTBEG00000011406	CPSF4	100	88.034	ENSMODG00000001367	CPSF4	87	88.034	Monodelphis_domestica
ENSTBEG00000011406	CPSF4	100	72.766	ENSMALG00000012611	cpsf4	87	72.766	Monopterus_albus
ENSTBEG00000011406	CPSF4	100	89.744	MGP_CAROLIEiJ_G0028012	Cpsf4	87	89.744	Mus_caroli
ENSTBEG00000011406	CPSF4	100	89.744	ENSMUSG00000029625	Cpsf4	87	89.744	Mus_musculus
ENSTBEG00000011406	CPSF4	100	89.744	MGP_PahariEiJ_G0024581	Cpsf4	87	89.744	Mus_pahari
ENSTBEG00000011406	CPSF4	100	90.171	MGP_SPRETEiJ_G0029013	Cpsf4	87	90.171	Mus_spretus
ENSTBEG00000011406	CPSF4	100	89.744	ENSMPUG00000016508	CPSF4	87	89.744	Mustela_putorius_furo
ENSTBEG00000011406	CPSF4	100	76.068	ENSMLUG00000010980	CPSF4	99	76.496	Myotis_lucifugus
ENSTBEG00000011406	CPSF4	100	89.316	ENSNGAG00000001567	Cpsf4	87	89.316	Nannospalax_galili
ENSTBEG00000011406	CPSF4	100	74.894	ENSNBRG00000003943	cpsf4	93	74.894	Neolamprologus_brichardi
ENSTBEG00000011406	CPSF4	100	86.752	ENSNLEG00000011074	CPSF4	87	86.752	Nomascus_leucogenys
ENSTBEG00000011406	CPSF4	100	88.034	ENSMEUG00000006955	CPSF4	87	88.034	Notamacropus_eugenii
ENSTBEG00000011406	CPSF4	100	89.744	ENSOPRG00000013663	CPSF4	87	89.744	Ochotona_princeps
ENSTBEG00000011406	CPSF4	100	89.744	ENSODEG00000011181	-	87	89.744	Octodon_degus
ENSTBEG00000011406	CPSF4	100	64.557	ENSODEG00000009779	-	87	64.557	Octodon_degus
ENSTBEG00000011406	CPSF4	93	68.493	ENSODEG00000018283	-	78	68.493	Octodon_degus
ENSTBEG00000011406	CPSF4	100	74.894	ENSONIG00000008495	cpsf4	87	74.894	Oreochromis_niloticus
ENSTBEG00000011406	CPSF4	100	87.179	ENSOANG00000007729	CPSF4	99	87.179	Ornithorhynchus_anatinus
ENSTBEG00000011406	CPSF4	93	50.442	ENSOANG00000009568	-	83	49.339	Ornithorhynchus_anatinus
ENSTBEG00000011406	CPSF4	100	89.316	ENSOCUG00000002437	CPSF4	61	89.316	Oryctolagus_cuniculus
ENSTBEG00000011406	CPSF4	100	73.077	ENSORLG00000022798	cpsf4	87	73.077	Oryzias_latipes
ENSTBEG00000011406	CPSF4	100	73.077	ENSORLG00020008548	cpsf4	87	73.077	Oryzias_latipes_hni
ENSTBEG00000011406	CPSF4	100	73.077	ENSORLG00015019575	cpsf4	87	73.077	Oryzias_latipes_hsok
ENSTBEG00000011406	CPSF4	100	71.795	ENSOMEG00000005176	cpsf4	87	71.795	Oryzias_melastigma
ENSTBEG00000011406	CPSF4	100	90.171	ENSOGAG00000010884	CPSF4	87	90.171	Otolemur_garnettii
ENSTBEG00000011406	CPSF4	100	81.513	ENSOARG00000018668	CPSF4	87	79.832	Ovis_aries
ENSTBEG00000011406	CPSF4	100	89.744	ENSPPAG00000043355	CPSF4	87	89.744	Pan_paniscus
ENSTBEG00000011406	CPSF4	100	89.744	ENSPPRG00000003134	CPSF4	87	89.744	Panthera_pardus
ENSTBEG00000011406	CPSF4	100	89.744	ENSPTIG00000005604	CPSF4	87	89.744	Panthera_tigris_altaica
ENSTBEG00000011406	CPSF4	100	89.744	ENSPTRG00000019453	CPSF4	87	89.744	Pan_troglodytes
ENSTBEG00000011406	CPSF4	100	90.171	ENSPANG00000023123	CPSF4	87	90.171	Papio_anubis
ENSTBEG00000011406	CPSF4	100	74.477	ENSPKIG00000014278	cpsf4	87	74.477	Paramormyrops_kingsleyae
ENSTBEG00000011406	CPSF4	93	53.425	ENSPSIG00000018198	-	100	52.752	Pelodiscus_sinensis
ENSTBEG00000011406	CPSF4	92	84.722	ENSPSIG00000011229	CPSF4	100	84.722	Pelodiscus_sinensis
ENSTBEG00000011406	CPSF4	93	66.972	ENSPMGG00000017735	cpsf4	81	67.431	Periophthalmus_magnuspinnatus
ENSTBEG00000011406	CPSF4	100	89.744	ENSPEMG00000004508	Cpsf4	87	89.744	Peromyscus_maniculatus_bairdii
ENSTBEG00000011406	CPSF4	100	88.034	ENSPCIG00000024776	CPSF4	87	88.034	Phascolarctos_cinereus
ENSTBEG00000011406	CPSF4	100	72.340	ENSPFOG00000014912	cpsf4	87	72.340	Poecilia_formosa
ENSTBEG00000011406	CPSF4	100	69.362	ENSPLAG00000009599	cpsf4	86	69.362	Poecilia_latipinna
ENSTBEG00000011406	CPSF4	100	72.340	ENSPMEG00000009790	cpsf4	87	72.340	Poecilia_mexicana
ENSTBEG00000011406	CPSF4	100	72.340	ENSPREG00000018166	cpsf4	87	70.940	Poecilia_reticulata
ENSTBEG00000011406	CPSF4	100	90.129	ENSPPYG00000017378	CPSF4	100	90.129	Pongo_abelii
ENSTBEG00000011406	CPSF4	100	89.316	ENSPCAG00000001892	CPSF4	87	89.316	Procavia_capensis
ENSTBEG00000011406	CPSF4	100	90.171	ENSPCOG00000012771	CPSF4	87	90.171	Propithecus_coquereli
ENSTBEG00000011406	CPSF4	93	88.940	ENSPVAG00000007531	CPSF4	81	88.940	Pteropus_vampyrus
ENSTBEG00000011406	CPSF4	100	74.894	ENSPNYG00000018559	cpsf4	87	74.894	Pundamilia_nyererei
ENSTBEG00000011406	CPSF4	100	75.847	ENSPNAG00000003736	cpsf4	87	76.695	Pygocentrus_nattereri
ENSTBEG00000011406	CPSF4	100	75.641	ENSRNOG00000000985	Cpsf4	86	76.496	Rattus_norvegicus
ENSTBEG00000011406	CPSF4	100	90.171	ENSRBIG00000033886	CPSF4	100	90.171	Rhinopithecus_bieti
ENSTBEG00000011406	CPSF4	100	77.350	ENSRROG00000040431	CPSF4	86	76.923	Rhinopithecus_roxellana
ENSTBEG00000011406	CPSF4	100	90.171	ENSSBOG00000020493	CPSF4	87	90.171	Saimiri_boliviensis_boliviensis
ENSTBEG00000011406	CPSF4	100	88.034	ENSSHAG00000011533	CPSF4	87	88.034	Sarcophilus_harrisii
ENSTBEG00000011406	CPSF4	100	75.104	ENSSFOG00015007883	cpsf4	87	75.934	Scleropages_formosus
ENSTBEG00000011406	CPSF4	100	69.231	ENSSMAG00000006374	cpsf4	86	68.803	Scophthalmus_maximus
ENSTBEG00000011406	CPSF4	100	73.418	ENSSDUG00000018887	cpsf4	87	73.418	Seriola_dumerili
ENSTBEG00000011406	CPSF4	100	73.840	ENSSLDG00000019078	cpsf4	87	73.840	Seriola_lalandi_dorsalis
ENSTBEG00000011406	CPSF4	100	90.171	ENSSARG00000012416	CPSF4	100	90.171	Sorex_araneus
ENSTBEG00000011406	CPSF4	95	55.111	ENSSPUG00000014803	-	81	54.185	Sphenodon_punctatus
ENSTBEG00000011406	CPSF4	100	85.043	ENSSPUG00000003549	CPSF4	87	85.043	Sphenodon_punctatus
ENSTBEG00000011406	CPSF4	100	69.658	ENSSPAG00000006174	cpsf4	85	68.376	Stegastes_partitus
ENSTBEG00000011406	CPSF4	100	77.350	ENSSSCG00000026896	CPSF4	86	76.923	Sus_scrofa
ENSTBEG00000011406	CPSF4	100	74.576	ENSTGUG00000007552	CPSF4	86	73.729	Taeniopygia_guttata
ENSTBEG00000011406	CPSF4	100	71.429	ENSTRUG00000024220	cpsf4	87	71.429	Takifugu_rubripes
ENSTBEG00000011406	CPSF4	100	70.213	ENSTNIG00000006265	cpsf4	87	71.915	Tetraodon_nigroviridis
ENSTBEG00000011406	CPSF4	100	66.239	ENSTTRG00000003007	CPSF4	87	66.239	Tursiops_truncatus
ENSTBEG00000011406	CPSF4	90	73.113	ENSUAMG00000008051	CPSF4	72	74.057	Ursus_americanus
ENSTBEG00000011406	CPSF4	100	75.641	ENSUMAG00000009474	CPSF4	86	76.496	Ursus_maritimus
ENSTBEG00000011406	CPSF4	100	76.923	ENSVVUG00000008824	CPSF4	86	76.496	Vulpes_vulpes
ENSTBEG00000011406	CPSF4	100	79.098	ENSXETG00000009892	cpsf4	87	79.098	Xenopus_tropicalis
ENSTBEG00000011406	CPSF4	99	56.710	ENSXETG00000004641	cpsf4l	86	56.710	Xenopus_tropicalis
ENSTBEG00000011406	CPSF4	100	71.915	ENSXCOG00000016040	cpsf4	87	71.915	Xiphophorus_couchianus
ENSTBEG00000011406	CPSF4	100	72.340	ENSXMAG00000024670	cpsf4	87	72.340	Xiphophorus_maculatus