EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000011424 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Minus strand
Length: 299371 bases
Position: chrGeneScaffold_406:100580-399950
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000009906	EST1	PF10374.9	2e-15	1	1
ENSTBEP00000009906	EST1_DNA_bind	PF10373.9	8.4e-45	1	1
ENSTBEP00000009906	PIN_4	PF13638.6	8.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000011468	SMG6-201	4239	-	ENSTBEP00000009906	1412 (aa)	-	UPI0000F5FE5C

Gene Model

Click here to download ENSTBEG00000011424's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000011424's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000011424	SMG6	100	88.795	ENSG00000070366	SMG6	94	96.410	Homo_sapiens
ENSTBEG00000011424	SMG6	72	56.422	ENSAPOG00000019448	smg6	74	52.978	Acanthochromis_polyacanthus
ENSTBEG00000011424	SMG6	100	89.006	ENSAMEG00000007632	SMG6	100	89.006	Ailuropoda_melanoleuca
ENSTBEG00000011424	SMG6	68	62.469	ENSACIG00000012997	smg6	95	62.278	Amphilophus_citrinellus
ENSTBEG00000011424	SMG6	72	56.330	ENSAOCG00000002630	smg6	74	52.784	Amphiprion_ocellaris
ENSTBEG00000011424	SMG6	72	56.422	ENSAPEG00000019101	smg6	74	52.941	Amphiprion_percula
ENSTBEG00000011424	SMG6	83	52.160	ENSATEG00000006483	smg6	73	52.208	Anabas_testudineus
ENSTBEG00000011424	SMG6	87	53.591	ENSACAG00000011783	SMG6	99	55.213	Anolis_carolinensis
ENSTBEG00000011424	SMG6	100	89.500	ENSANAG00000035760	SMG6	100	89.500	Aotus_nancymaae
ENSTBEG00000011424	SMG6	71	56.522	ENSACLG00000005288	smg6	80	52.388	Astatotilapia_calliptera
ENSTBEG00000011424	SMG6	68	60.162	ENSAMXG00000017326	smg6	99	48.340	Astyanax_mexicanus
ENSTBEG00000011424	SMG6	100	88.302	ENSBTAG00000000267	SMG6	100	88.513	Bos_taurus
ENSTBEG00000011424	SMG6	100	89.077	ENSCJAG00000001820	SMG6	100	89.077	Callithrix_jacchus
ENSTBEG00000011424	SMG6	100	88.584	ENSCAFG00000019260	SMG6	100	88.584	Canis_familiaris
ENSTBEG00000011424	SMG6	100	88.584	ENSCAFG00020009770	SMG6	100	88.584	Canis_lupus_dingo
ENSTBEG00000011424	SMG6	100	88.231	ENSCHIG00000021998	SMG6	100	88.443	Capra_hircus
ENSTBEG00000011424	SMG6	100	89.147	ENSTSYG00000003406	SMG6	100	89.147	Carlito_syrichta
ENSTBEG00000011424	SMG6	92	84.433	ENSCAPG00000016197	SMG6	95	83.377	Cavia_aperea
ENSTBEG00000011424	SMG6	100	87.324	ENSCPOG00000014878	SMG6	98	98.529	Cavia_porcellus
ENSTBEG00000011424	SMG6	100	89.500	ENSCCAG00000035801	SMG6	100	89.500	Cebus_capucinus
ENSTBEG00000011424	SMG6	100	89.218	ENSCATG00000031956	SMG6	100	89.218	Cercocebus_atys
ENSTBEG00000011424	SMG6	100	89.006	ENSCLAG00000006748	SMG6	95	98.529	Chinchilla_lanigera
ENSTBEG00000011424	SMG6	100	89.500	ENSCSAG00000013800	SMG6	100	89.500	Chlorocebus_sabaeus
ENSTBEG00000011424	SMG6	52	100.000	ENSCHOG00000005024	-	67	100.000	Choloepus_hoffmanni
ENSTBEG00000011424	SMG6	100	69.199	ENSCPBG00000020369	SMG6	100	69.611	Chrysemys_picta_bellii
ENSTBEG00000011424	SMG6	98	89.057	ENSCANG00000031764	SMG6	100	89.057	Colobus_angolensis_palliatus
ENSTBEG00000011424	SMG6	55	87.789	ENSCGRG00001019595	Smg6	100	87.789	Cricetulus_griseus_chok1gshd
ENSTBEG00000011424	SMG6	98	84.043	ENSCGRG00000007782	Smg6	97	87.435	Cricetulus_griseus_crigri
ENSTBEG00000011424	SMG6	100	49.886	ENSCSEG00000012757	smg6	88	50.391	Cynoglossus_semilaevis
ENSTBEG00000011424	SMG6	72	54.727	ENSCVAG00000012789	smg6	74	51.141	Cyprinodon_variegatus
ENSTBEG00000011424	SMG6	96	52.488	ENSDARG00000100481	smg6	90	53.554	Danio_rerio
ENSTBEG00000011424	SMG6	100	88.302	ENSDNOG00000048283	SMG6	100	88.302	Dasypus_novemcinctus
ENSTBEG00000011424	SMG6	100	84.491	ENSDORG00000016614	Smg6	94	98.529	Dipodomys_ordii
ENSTBEG00000011424	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSTBEG00000011424	SMG6	73	52.280	ENSEBUG00000005059	smg6	71	47.793	Eptatretus_burgeri
ENSTBEG00000011424	SMG6	99	89.485	ENSEASG00005009318	SMG6	99	89.485	Equus_asinus_asinus
ENSTBEG00000011424	SMG6	99	89.273	ENSECAG00000006519	SMG6	99	89.273	Equus_caballus
ENSTBEG00000011424	SMG6	88	98.093	ENSEEUG00000003493	SMG6	88	98.093	Erinaceus_europaeus
ENSTBEG00000011424	SMG6	68	63.959	ENSELUG00000005934	smg6	64	63.959	Esox_lucius
ENSTBEG00000011424	SMG6	100	89.570	ENSFCAG00000028817	SMG6	100	89.570	Felis_catus
ENSTBEG00000011424	SMG6	98	68.571	ENSFALG00000006538	SMG6	100	68.643	Ficedula_albicollis
ENSTBEG00000011424	SMG6	100	88.161	ENSFDAG00000015106	SMG6	96	97.794	Fukomys_damarensis
ENSTBEG00000011424	SMG6	83	50.549	ENSFHEG00000013282	smg6	75	50.901	Fundulus_heteroclitus
ENSTBEG00000011424	SMG6	53	69.626	ENSGMOG00000019077	smg6	68	69.626	Gadus_morhua
ENSTBEG00000011424	SMG6	100	68.261	ENSGALG00000003108	SMG6	98	68.611	Gallus_gallus
ENSTBEG00000011424	SMG6	72	55.201	ENSGAFG00000000379	smg6	74	51.377	Gambusia_affinis
ENSTBEG00000011424	SMG6	91	50.893	ENSGACG00000020521	smg6	99	51.146	Gasterosteus_aculeatus
ENSTBEG00000011424	SMG6	98	69.044	ENSGAGG00000025617	SMG6	100	69.615	Gopherus_agassizii
ENSTBEG00000011424	SMG6	100	89.570	ENSGGOG00000017156	SMG6	100	89.570	Gorilla_gorilla
ENSTBEG00000011424	SMG6	83	52.160	ENSHBUG00000021311	smg6	74	52.826	Haplochromis_burtoni
ENSTBEG00000011424	SMG6	100	88.459	ENSHGLG00000012882	SMG6	96	98.529	Heterocephalus_glaber_female
ENSTBEG00000011424	SMG6	100	88.459	ENSHGLG00100017815	SMG6	96	98.529	Heterocephalus_glaber_male
ENSTBEG00000011424	SMG6	72	55.460	ENSHCOG00000008761	smg6	97	50.529	Hippocampus_comes
ENSTBEG00000011424	SMG6	83	51.852	ENSIPUG00000012493	smg6	75	51.575	Ictalurus_punctatus
ENSTBEG00000011424	SMG6	100	89.852	ENSSTOG00000028127	SMG6	97	98.529	Ictidomys_tridecemlineatus
ENSTBEG00000011424	SMG6	79	83.675	ENSJJAG00000015367	Smg6	95	81.889	Jaculus_jaculus
ENSTBEG00000011424	SMG6	85	51.298	ENSKMAG00000000279	smg6	76	51.306	Kryptolebias_marmoratus
ENSTBEG00000011424	SMG6	86	49.886	ENSLBEG00000002184	smg6	76	50.113	Labrus_bergylta
ENSTBEG00000011424	SMG6	55	56.627	ENSLACG00000000806	-	98	58.017	Latimeria_chalumnae
ENSTBEG00000011424	SMG6	69	71.274	ENSLOCG00000006448	smg6	82	69.895	Lepisosteus_oculatus
ENSTBEG00000011424	SMG6	100	88.654	ENSLAFG00000001261	SMG6	100	88.654	Loxodonta_africana
ENSTBEG00000011424	SMG6	100	89.288	ENSMFAG00000003394	SMG6	100	89.288	Macaca_fascicularis
ENSTBEG00000011424	SMG6	100	89.359	ENSMMUG00000023161	SMG6	100	89.359	Macaca_mulatta
ENSTBEG00000011424	SMG6	100	85.292	ENSMNEG00000044592	SMG6	100	85.292	Macaca_nemestrina
ENSTBEG00000011424	SMG6	98	87.383	ENSMLEG00000029353	SMG6	100	89.313	Mandrillus_leucophaeus
ENSTBEG00000011424	SMG6	72	57.286	ENSMAMG00000020119	smg6	79	52.025	Mastacembelus_armatus
ENSTBEG00000011424	SMG6	71	56.550	ENSMZEG00005024736	smg6	74	52.516	Maylandia_zebra
ENSTBEG00000011424	SMG6	69	64.052	ENSMGAG00000005401	-	94	64.052	Meleagris_gallopavo
ENSTBEG00000011424	SMG6	100	90.345	ENSMICG00000012913	SMG6	100	90.345	Microcebus_murinus
ENSTBEG00000011424	SMG6	100	45.641	ENSMMOG00000010883	smg6	97	63.542	Mola_mola
ENSTBEG00000011424	SMG6	100	81.492	ENSMODG00000010622	SMG6	100	81.492	Monodelphis_domestica
ENSTBEG00000011424	SMG6	83	52.455	ENSMALG00000001106	smg6	73	53.110	Monopterus_albus
ENSTBEG00000011424	SMG6	100	87.377	MGP_CAROLIEiJ_G0016729	Smg6	96	97.794	Mus_caroli
ENSTBEG00000011424	SMG6	100	87.165	ENSMUSG00000038290	Smg6	96	97.794	Mus_musculus
ENSTBEG00000011424	SMG6	100	86.601	MGP_PahariEiJ_G0017866	Smg6	96	97.794	Mus_pahari
ENSTBEG00000011424	SMG6	100	87.165	MGP_SPRETEiJ_G0017572	Smg6	97	97.794	Mus_spretus
ENSTBEG00000011424	SMG6	100	89.077	ENSMPUG00000013046	SMG6	100	89.077	Mustela_putorius_furo
ENSTBEG00000011424	SMG6	100	88.513	ENSMLUG00000005739	SMG6	100	88.513	Myotis_lucifugus
ENSTBEG00000011424	SMG6	98	86.609	ENSNGAG00000007287	Smg6	100	86.609	Nannospalax_galili
ENSTBEG00000011424	SMG6	83	51.491	ENSNBRG00000009511	smg6	81	52.317	Neolamprologus_brichardi
ENSTBEG00000011424	SMG6	98	88.666	ENSNLEG00000017171	SMG6	100	88.650	Nomascus_leucogenys
ENSTBEG00000011424	SMG6	98	77.802	ENSMEUG00000015804	SMG6	100	77.802	Notamacropus_eugenii
ENSTBEG00000011424	SMG6	62	91.855	ENSOPRG00000000579	SMG6	85	98.947	Ochotona_princeps
ENSTBEG00000011424	SMG6	100	82.125	ENSODEG00000008038	SMG6	100	82.125	Octodon_degus
ENSTBEG00000011424	SMG6	100	48.625	ENSONIG00000005594	smg6	100	49.298	Oreochromis_niloticus
ENSTBEG00000011424	SMG6	100	89.374	ENSOCUG00000013018	SMG6	100	89.374	Oryctolagus_cuniculus
ENSTBEG00000011424	SMG6	83	51.978	ENSORLG00000003317	smg6	74	52.732	Oryzias_latipes
ENSTBEG00000011424	SMG6	83	52.102	ENSORLG00020015343	smg6	74	52.381	Oryzias_latipes_hni
ENSTBEG00000011424	SMG6	83	51.978	ENSORLG00015020454	smg6	74	52.532	Oryzias_latipes_hsok
ENSTBEG00000011424	SMG6	83	51.456	ENSOMEG00000010838	smg6	75	52.260	Oryzias_melastigma
ENSTBEG00000011424	SMG6	100	89.155	ENSOGAG00000004483	SMG6	100	89.155	Otolemur_garnettii
ENSTBEG00000011424	SMG6	100	86.408	ENSOARG00000015076	SMG6	100	88.087	Ovis_aries
ENSTBEG00000011424	SMG6	100	89.570	ENSPPAG00000043296	SMG6	100	89.570	Pan_paniscus
ENSTBEG00000011424	SMG6	100	89.641	ENSPPRG00000014581	SMG6	100	89.641	Panthera_pardus
ENSTBEG00000011424	SMG6	98	89.603	ENSPTIG00000008925	SMG6	100	89.432	Panthera_tigris_altaica
ENSTBEG00000011424	SMG6	100	89.570	ENSPTRG00000008544	SMG6	100	89.570	Pan_troglodytes
ENSTBEG00000011424	SMG6	100	89.288	ENSPANG00000024588	SMG6	100	89.288	Papio_anubis
ENSTBEG00000011424	SMG6	89	68.314	ENSPSIG00000006660	SMG6	96	68.392	Pelodiscus_sinensis
ENSTBEG00000011424	SMG6	96	60.448	ENSPMGG00000000844	smg6	100	56.577	Periophthalmus_magnuspinnatus
ENSTBEG00000011424	SMG6	100	88.293	ENSPEMG00000020707	Smg6	98	97.794	Peromyscus_maniculatus_bairdii
ENSTBEG00000011424	SMG6	100	49.022	ENSPFOG00000012035	smg6	100	48.825	Poecilia_formosa
ENSTBEG00000011424	SMG6	72	55.393	ENSPLAG00000017660	smg6	74	51.152	Poecilia_latipinna
ENSTBEG00000011424	SMG6	72	55.839	ENSPMEG00000000258	smg6	74	51.431	Poecilia_mexicana
ENSTBEG00000011424	SMG6	72	55.352	ENSPREG00000010066	smg6	74	51.417	Poecilia_reticulata
ENSTBEG00000011424	SMG6	100	84.177	ENSPPYG00000007790	SMG6	100	84.177	Pongo_abelii
ENSTBEG00000011424	SMG6	94	97.613	ENSPCAG00000000552	SMG6	94	97.613	Procavia_capensis
ENSTBEG00000011424	SMG6	100	90.134	ENSPCOG00000020925	SMG6	100	90.134	Propithecus_coquereli
ENSTBEG00000011424	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSTBEG00000011424	SMG6	80	63.021	ENSPNYG00000024151	smg6	76	63.021	Pundamilia_nyererei
ENSTBEG00000011424	SMG6	84	63.568	ENSPNAG00000015480	smg6	87	63.291	Pygocentrus_nattereri
ENSTBEG00000011424	SMG6	100	87.094	ENSRNOG00000003041	Smg6	96	92.669	Rattus_norvegicus
ENSTBEG00000011424	SMG6	100	89.218	ENSRBIG00000024746	SMG6	100	89.218	Rhinopithecus_bieti
ENSTBEG00000011424	SMG6	100	89.288	ENSRROG00000030423	SMG6	100	89.288	Rhinopithecus_roxellana
ENSTBEG00000011424	SMG6	100	89.570	ENSSBOG00000022518	SMG6	100	87.879	Saimiri_boliviensis_boliviensis
ENSTBEG00000011424	SMG6	98	81.062	ENSSHAG00000010045	SMG6	98	81.062	Sarcophilus_harrisii
ENSTBEG00000011424	SMG6	68	65.729	ENSSFOG00015005436	smg6	72	65.394	Scleropages_formosus
ENSTBEG00000011424	SMG6	83	52.150	ENSSMAG00000019777	smg6	73	51.794	Scophthalmus_maximus
ENSTBEG00000011424	SMG6	83	52.418	ENSSDUG00000016412	smg6	74	52.492	Seriola_dumerili
ENSTBEG00000011424	SMG6	80	51.375	ENSSLDG00000020747	smg6	77	51.454	Seriola_lalandi_dorsalis
ENSTBEG00000011424	SMG6	99	66.783	ENSSPUG00000007152	SMG6	99	66.853	Sphenodon_punctatus
ENSTBEG00000011424	SMG6	100	88.380	ENSSSCG00000017826	SMG6	100	88.380	Sus_scrofa
ENSTBEG00000011424	SMG6	100	68.706	ENSTGUG00000005836	SMG6	100	68.847	Taeniopygia_guttata
ENSTBEG00000011424	SMG6	83	52.240	ENSTRUG00000000358	smg6	81	52.818	Takifugu_rubripes
ENSTBEG00000011424	SMG6	100	47.164	ENSTNIG00000016164	smg6	100	47.521	Tetraodon_nigroviridis
ENSTBEG00000011424	SMG6	91	86.465	ENSTTRG00000001175	SMG6	91	86.465	Tursiops_truncatus
ENSTBEG00000011424	SMG6	100	89.170	ENSUAMG00000025152	SMG6	100	89.100	Ursus_americanus
ENSTBEG00000011424	SMG6	98	89.386	ENSUMAG00000009306	SMG6	100	89.386	Ursus_maritimus
ENSTBEG00000011424	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSTBEG00000011424	SMG6	100	88.513	ENSVVUG00000021727	SMG6	100	88.513	Vulpes_vulpes
ENSTBEG00000011424	SMG6	94	67.810	ENSXETG00000023799	SMG6	96	67.018	Xenopus_tropicalis
ENSTBEG00000011424	SMG6	69	62.887	ENSXCOG00000009867	smg6	71	62.371	Xiphophorus_couchianus
ENSTBEG00000011424	SMG6	72	55.657	ENSXMAG00000010321	smg6	74	51.258	Xiphophorus_maculatus