EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000014337 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Minus strand
Length: 14146 bases
Position: chrscaffold_133642:5233-19378
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000012421	SMN	PF06003.12	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000014330	SMNDC1-201	717	-	ENSTBEP00000012421	238 (aa)	-	UPI0000F5D6FC

Gene Model

Click here to download ENSTBEG00000014337's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000014337's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000014337	SMNDC1	100	99.160	ENSG00000119953	SMNDC1	100	99.160	Homo_sapiens
ENSTBEG00000014337	SMNDC1	100	76.151	ENSAPOG00000021772	smndc1	100	76.151	Acanthochromis_polyacanthus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSAMEG00000005251	SMNDC1	100	99.580	Ailuropoda_melanoleuca
ENSTBEG00000014337	SMNDC1	100	76.987	ENSACIG00000004819	smndc1	100	76.987	Amphilophus_citrinellus
ENSTBEG00000014337	SMNDC1	100	76.151	ENSAOCG00000017869	smndc1	100	76.151	Amphiprion_ocellaris
ENSTBEG00000014337	SMNDC1	100	76.151	ENSAPEG00000007752	smndc1	100	76.151	Amphiprion_percula
ENSTBEG00000014337	SMNDC1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSTBEG00000014337	SMNDC1	83	95.960	ENSAPLG00000004322	SMNDC1	100	95.960	Anas_platyrhynchos
ENSTBEG00000014337	SMNDC1	100	95.378	ENSACAG00000005983	SMNDC1	100	95.378	Anolis_carolinensis
ENSTBEG00000014337	SMNDC1	100	99.580	ENSANAG00000032875	SMNDC1	100	99.580	Aotus_nancymaae
ENSTBEG00000014337	SMNDC1	100	76.050	ENSACLG00000016360	smndc1	100	76.050	Astatotilapia_calliptera
ENSTBEG00000014337	SMNDC1	100	75.630	ENSAMXG00000020310	smndc1	100	75.630	Astyanax_mexicanus
ENSTBEG00000014337	SMNDC1	100	99.160	ENSBTAG00000000551	SMNDC1	100	99.160	Bos_taurus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSCJAG00000018624	SMNDC1	100	99.580	Callithrix_jacchus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSCAFG00000010720	SMNDC1	100	99.580	Canis_familiaris
ENSTBEG00000014337	SMNDC1	100	99.580	ENSCAFG00020011913	SMNDC1	100	99.580	Canis_lupus_dingo
ENSTBEG00000014337	SMNDC1	100	99.160	ENSCHIG00000010604	SMNDC1	100	99.160	Capra_hircus
ENSTBEG00000014337	SMNDC1	100	99.160	ENSTSYG00000026454	SMNDC1	100	99.160	Carlito_syrichta
ENSTBEG00000014337	SMNDC1	100	84.583	ENSCAPG00000009132	SMNDC1	100	99.502	Cavia_aperea
ENSTBEG00000014337	SMNDC1	100	99.580	ENSCPOG00000031666	SMNDC1	100	99.580	Cavia_porcellus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSCCAG00000021793	SMNDC1	100	99.580	Cebus_capucinus
ENSTBEG00000014337	SMNDC1	100	99.160	ENSCATG00000035910	SMNDC1	100	99.160	Cercocebus_atys
ENSTBEG00000014337	SMNDC1	100	99.160	ENSCLAG00000002838	SMNDC1	100	99.160	Chinchilla_lanigera
ENSTBEG00000014337	SMNDC1	100	99.580	ENSCSAG00000005169	SMNDC1	100	99.580	Chlorocebus_sabaeus
ENSTBEG00000014337	SMNDC1	81	98.964	ENSCHOG00000002936	SMNDC1	100	98.964	Choloepus_hoffmanni
ENSTBEG00000014337	SMNDC1	100	97.479	ENSCPBG00000012837	SMNDC1	100	97.479	Chrysemys_picta_bellii
ENSTBEG00000014337	SMNDC1	100	91.597	ENSCANG00000034620	-	100	91.597	Colobus_angolensis_palliatus
ENSTBEG00000014337	SMNDC1	100	78.571	ENSCANG00000036994	-	100	78.571	Colobus_angolensis_palliatus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSCANG00000031720	-	100	99.580	Colobus_angolensis_palliatus
ENSTBEG00000014337	SMNDC1	100	98.739	ENSCGRG00001012973	Smndc1	100	98.739	Cricetulus_griseus_chok1gshd
ENSTBEG00000014337	SMNDC1	100	98.739	ENSCGRG00000012396	Smndc1	100	98.739	Cricetulus_griseus_crigri
ENSTBEG00000014337	SMNDC1	100	75.630	ENSCSEG00000015621	smndc1	100	75.630	Cynoglossus_semilaevis
ENSTBEG00000014337	SMNDC1	100	76.471	ENSCVAG00000020432	smndc1	100	76.471	Cyprinodon_variegatus
ENSTBEG00000014337	SMNDC1	100	79.412	ENSDARG00000056235	smndc1	100	79.412	Danio_rerio
ENSTBEG00000014337	SMNDC1	100	99.580	ENSDNOG00000016387	SMNDC1	83	99.580	Dasypus_novemcinctus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSDORG00000023715	Smndc1	100	99.580	Dipodomys_ordii
ENSTBEG00000014337	SMNDC1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSTBEG00000014337	SMNDC1	100	71.369	ENSEBUG00000010929	smndc1	100	71.369	Eptatretus_burgeri
ENSTBEG00000014337	SMNDC1	100	99.580	ENSEASG00005014930	SMNDC1	100	99.580	Equus_asinus_asinus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSECAG00000029973	SMNDC1	100	99.580	Equus_caballus
ENSTBEG00000014337	SMNDC1	83	69.697	ENSEEUG00000013407	-	100	69.697	Erinaceus_europaeus
ENSTBEG00000014337	SMNDC1	100	77.311	ENSELUG00000000227	smndc1	100	77.311	Esox_lucius
ENSTBEG00000014337	SMNDC1	100	99.580	ENSFCAG00000027353	SMNDC1	100	99.580	Felis_catus
ENSTBEG00000014337	SMNDC1	100	95.798	ENSFALG00000002306	SMNDC1	100	95.798	Ficedula_albicollis
ENSTBEG00000014337	SMNDC1	100	99.160	ENSFDAG00000006468	SMNDC1	100	99.160	Fukomys_damarensis
ENSTBEG00000014337	SMNDC1	100	76.050	ENSFHEG00000020150	smndc1	100	76.050	Fundulus_heteroclitus
ENSTBEG00000014337	SMNDC1	100	76.471	ENSGMOG00000016585	smndc1	100	76.471	Gadus_morhua
ENSTBEG00000014337	SMNDC1	100	95.798	ENSGALG00000008561	SMNDC1	100	95.798	Gallus_gallus
ENSTBEG00000014337	SMNDC1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSTBEG00000014337	SMNDC1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSTBEG00000014337	SMNDC1	100	97.479	ENSGAGG00000024547	SMNDC1	100	97.479	Gopherus_agassizii
ENSTBEG00000014337	SMNDC1	100	99.580	ENSGGOG00000010071	SMNDC1	100	99.580	Gorilla_gorilla
ENSTBEG00000014337	SMNDC1	100	76.050	ENSHBUG00000017596	smndc1	100	76.050	Haplochromis_burtoni
ENSTBEG00000014337	SMNDC1	100	99.160	ENSHGLG00000013390	-	100	99.160	Heterocephalus_glaber_female
ENSTBEG00000014337	SMNDC1	100	68.852	ENSHGLG00000001157	-	100	65.714	Heterocephalus_glaber_female
ENSTBEG00000014337	SMNDC1	100	99.160	ENSHGLG00100004814	-	100	99.160	Heterocephalus_glaber_male
ENSTBEG00000014337	SMNDC1	100	77.049	ENSHGLG00100004278	-	100	76.639	Heterocephalus_glaber_male
ENSTBEG00000014337	SMNDC1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSTBEG00000014337	SMNDC1	100	76.891	ENSIPUG00000004217	smndc1	100	76.891	Ictalurus_punctatus
ENSTBEG00000014337	SMNDC1	100	99.160	ENSSTOG00000006088	SMNDC1	100	99.160	Ictidomys_tridecemlineatus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSJJAG00000019974	Smndc1	100	99.580	Jaculus_jaculus
ENSTBEG00000014337	SMNDC1	100	75.210	ENSKMAG00000020134	smndc1	100	75.210	Kryptolebias_marmoratus
ENSTBEG00000014337	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSTBEG00000014337	SMNDC1	100	83.613	ENSLACG00000007784	SMNDC1	100	83.613	Latimeria_chalumnae
ENSTBEG00000014337	SMNDC1	100	84.454	ENSLOCG00000012355	smndc1	100	84.454	Lepisosteus_oculatus
ENSTBEG00000014337	SMNDC1	100	99.160	ENSLAFG00000014353	SMNDC1	100	99.160	Loxodonta_africana
ENSTBEG00000014337	SMNDC1	100	81.933	ENSMFAG00000038381	-	100	81.933	Macaca_fascicularis
ENSTBEG00000014337	SMNDC1	100	99.580	ENSMFAG00000002433	-	100	99.580	Macaca_fascicularis
ENSTBEG00000014337	SMNDC1	100	99.580	ENSMMUG00000007775	SMNDC1	100	99.580	Macaca_mulatta
ENSTBEG00000014337	SMNDC1	100	81.933	ENSMMUG00000045875	-	100	81.933	Macaca_mulatta
ENSTBEG00000014337	SMNDC1	100	99.580	ENSMNEG00000042963	-	100	99.580	Macaca_nemestrina
ENSTBEG00000014337	SMNDC1	100	87.815	ENSMNEG00000033853	-	100	87.815	Macaca_nemestrina
ENSTBEG00000014337	SMNDC1	100	93.305	ENSMLEG00000040236	SMNDC1	100	92.887	Mandrillus_leucophaeus
ENSTBEG00000014337	SMNDC1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSTBEG00000014337	SMNDC1	100	76.050	ENSMZEG00005027510	smndc1	100	76.050	Maylandia_zebra
ENSTBEG00000014337	SMNDC1	84	95.500	ENSMGAG00000010777	SMNDC1	84	95.500	Meleagris_gallopavo
ENSTBEG00000014337	SMNDC1	99	80.591	ENSMAUG00000005459	-	93	80.591	Mesocricetus_auratus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSMAUG00000012243	-	100	99.580	Mesocricetus_auratus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSMICG00000027336	-	100	99.580	Microcebus_murinus
ENSTBEG00000014337	SMNDC1	100	86.555	ENSMICG00000031640	-	100	86.555	Microcebus_murinus
ENSTBEG00000014337	SMNDC1	100	99.160	ENSMOCG00000002458	Smndc1	100	99.160	Microtus_ochrogaster
ENSTBEG00000014337	SMNDC1	100	76.050	ENSMMOG00000008856	smndc1	100	76.050	Mola_mola
ENSTBEG00000014337	SMNDC1	100	98.739	ENSMODG00000010542	SMNDC1	100	98.739	Monodelphis_domestica
ENSTBEG00000014337	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSTBEG00000014337	SMNDC1	100	99.160	MGP_CAROLIEiJ_G0023072	Smndc1	100	99.160	Mus_caroli
ENSTBEG00000014337	SMNDC1	100	98.739	ENSMUSG00000025024	Smndc1	100	98.739	Mus_musculus
ENSTBEG00000014337	SMNDC1	100	98.319	MGP_PahariEiJ_G0014560	Smndc1	100	98.319	Mus_pahari
ENSTBEG00000014337	SMNDC1	100	98.739	MGP_SPRETEiJ_G0023993	Smndc1	100	98.739	Mus_spretus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSMPUG00000002089	SMNDC1	100	99.580	Mustela_putorius_furo
ENSTBEG00000014337	SMNDC1	100	98.319	ENSMLUG00000016007	SMNDC1	100	98.319	Myotis_lucifugus
ENSTBEG00000014337	SMNDC1	100	98.739	ENSNGAG00000006833	Smndc1	100	98.739	Nannospalax_galili
ENSTBEG00000014337	SMNDC1	100	75.630	ENSNBRG00000017089	smndc1	100	75.630	Neolamprologus_brichardi
ENSTBEG00000014337	SMNDC1	100	99.580	ENSNLEG00000015471	SMNDC1	100	99.580	Nomascus_leucogenys
ENSTBEG00000014337	SMNDC1	82	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSTBEG00000014337	SMNDC1	100	99.580	ENSOPRG00000015348	SMNDC1	100	99.580	Ochotona_princeps
ENSTBEG00000014337	SMNDC1	100	68.908	ENSODEG00000007594	-	100	65.966	Octodon_degus
ENSTBEG00000014337	SMNDC1	100	75.630	ENSONIG00000000434	smndc1	100	75.630	Oreochromis_niloticus
ENSTBEG00000014337	SMNDC1	100	98.319	ENSOANG00000001598	SMNDC1	100	98.319	Ornithorhynchus_anatinus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSOCUG00000008145	-	100	99.580	Oryctolagus_cuniculus
ENSTBEG00000014337	SMNDC1	100	75.630	ENSOCUG00000012274	-	100	77.311	Oryctolagus_cuniculus
ENSTBEG00000014337	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSTBEG00000014337	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSTBEG00000014337	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSTBEG00000014337	SMNDC1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSTBEG00000014337	SMNDC1	100	99.160	ENSOGAG00000000571	SMNDC1	100	99.160	Otolemur_garnettii
ENSTBEG00000014337	SMNDC1	100	99.160	ENSOARG00000009500	SMNDC1	100	99.160	Ovis_aries
ENSTBEG00000014337	SMNDC1	100	99.580	ENSPPAG00000027815	SMNDC1	100	99.580	Pan_paniscus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSPPRG00000013749	SMNDC1	100	99.580	Panthera_pardus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSPTIG00000011451	SMNDC1	100	99.580	Panthera_tigris_altaica
ENSTBEG00000014337	SMNDC1	100	99.580	ENSPTRG00000002937	SMNDC1	100	99.580	Pan_troglodytes
ENSTBEG00000014337	SMNDC1	100	99.580	ENSPANG00000020805	-	100	99.580	Papio_anubis
ENSTBEG00000014337	SMNDC1	100	93.697	ENSPANG00000031346	-	100	93.697	Papio_anubis
ENSTBEG00000014337	SMNDC1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSTBEG00000014337	SMNDC1	100	97.059	ENSPSIG00000012257	SMNDC1	100	97.059	Pelodiscus_sinensis
ENSTBEG00000014337	SMNDC1	100	73.529	ENSPMGG00000015651	smndc1	100	73.529	Periophthalmus_magnuspinnatus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSPEMG00000022058	Smndc1	100	99.580	Peromyscus_maniculatus_bairdii
ENSTBEG00000014337	SMNDC1	100	68.033	ENSPMAG00000007705	smndc1	100	68.033	Petromyzon_marinus
ENSTBEG00000014337	SMNDC1	100	98.739	ENSPCIG00000018419	SMNDC1	100	98.739	Phascolarctos_cinereus
ENSTBEG00000014337	SMNDC1	97	63.043	ENSPCIG00000009693	-	100	63.043	Phascolarctos_cinereus
ENSTBEG00000014337	SMNDC1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSTBEG00000014337	SMNDC1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSTBEG00000014337	SMNDC1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSTBEG00000014337	SMNDC1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSTBEG00000014337	SMNDC1	100	99.580	ENSPPYG00000002643	SMNDC1	100	99.580	Pongo_abelii
ENSTBEG00000014337	SMNDC1	81	97.927	ENSPCAG00000016183	SMNDC1	100	97.927	Procavia_capensis
ENSTBEG00000014337	SMNDC1	100	99.160	ENSPCOG00000024343	SMNDC1	100	99.160	Propithecus_coquereli
ENSTBEG00000014337	SMNDC1	100	76.471	ENSPVAG00000004368	SMNDC1	100	76.471	Pteropus_vampyrus
ENSTBEG00000014337	SMNDC1	92	69.778	ENSPNYG00000024093	smndc1	86	75.758	Pundamilia_nyererei
ENSTBEG00000014337	SMNDC1	100	76.050	ENSPNAG00000025285	smndc1	100	76.050	Pygocentrus_nattereri
ENSTBEG00000014337	SMNDC1	100	99.160	ENSRNOG00000014833	Smndc1	100	99.160	Rattus_norvegicus
ENSTBEG00000014337	SMNDC1	100	99.160	ENSRBIG00000000224	-	100	99.160	Rhinopithecus_bieti
ENSTBEG00000014337	SMNDC1	100	83.193	ENSRBIG00000032452	-	100	83.193	Rhinopithecus_bieti
ENSTBEG00000014337	SMNDC1	100	83.613	ENSRROG00000039125	-	100	83.613	Rhinopithecus_roxellana
ENSTBEG00000014337	SMNDC1	100	99.580	ENSRROG00000044992	-	100	99.580	Rhinopithecus_roxellana
ENSTBEG00000014337	SMNDC1	100	99.580	ENSSBOG00000026789	SMNDC1	100	99.580	Saimiri_boliviensis_boliviensis
ENSTBEG00000014337	SMNDC1	100	98.739	ENSSHAG00000015189	SMNDC1	100	98.739	Sarcophilus_harrisii
ENSTBEG00000014337	SMNDC1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSTBEG00000014337	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSTBEG00000014337	SMNDC1	100	76.471	ENSSDUG00000015330	smndc1	100	76.471	Seriola_dumerili
ENSTBEG00000014337	SMNDC1	100	76.471	ENSSLDG00000017325	smndc1	100	76.471	Seriola_lalandi_dorsalis
ENSTBEG00000014337	SMNDC1	100	99.160	ENSSARG00000006063	SMNDC1	100	99.160	Sorex_araneus
ENSTBEG00000014337	SMNDC1	100	95.798	ENSSPUG00000004574	SMNDC1	100	95.798	Sphenodon_punctatus
ENSTBEG00000014337	SMNDC1	100	75.732	ENSSPAG00000000338	smndc1	100	74.370	Stegastes_partitus
ENSTBEG00000014337	SMNDC1	100	99.160	ENSSSCG00000030507	SMNDC1	100	99.160	Sus_scrofa
ENSTBEG00000014337	SMNDC1	100	95.798	ENSTGUG00000010599	SMNDC1	100	95.798	Taeniopygia_guttata
ENSTBEG00000014337	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSTBEG00000014337	SMNDC1	100	75.210	ENSTNIG00000013331	smndc1	100	75.210	Tetraodon_nigroviridis
ENSTBEG00000014337	SMNDC1	100	99.580	ENSUAMG00000008142	SMNDC1	100	99.580	Ursus_americanus
ENSTBEG00000014337	SMNDC1	100	99.580	ENSUMAG00000023722	SMNDC1	100	99.580	Ursus_maritimus
ENSTBEG00000014337	SMNDC1	83	98.990	ENSVPAG00000003402	SMNDC1	100	98.990	Vicugna_pacos
ENSTBEG00000014337	SMNDC1	100	99.580	ENSVVUG00000007820	SMNDC1	100	99.580	Vulpes_vulpes
ENSTBEG00000014337	SMNDC1	60	81.690	ENSXETG00000015415	SMNDC1	100	81.690	Xenopus_tropicalis
ENSTBEG00000014337	SMNDC1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSTBEG00000014337	SMNDC1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus