EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTBEG00000015884 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Tupaia_belangeri
Status: putative
Strand: Plus strand
Length: 6772 bases
Position: chrscaffold_4126:2085-8856
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTBEP00000013780	LSM	PF01423.22	5.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTBET00000015870	LSM1-201	354	-	ENSTBEP00000013780	117 (aa)	-	UPI0000F5D664

Gene Model

Click here to download ENSTBEG00000015884's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTBEG00000015884's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTBEG00000015884	LSM1	100	97.436	ENSG00000175324	LSM1	88	97.436	Homo_sapiens
ENSTBEG00000015884	LSM1	100	83.761	ENSAPOG00000010833	lsm1	88	83.761	Acanthochromis_polyacanthus
ENSTBEG00000015884	LSM1	100	97.436	ENSAMEG00000011141	LSM1	88	97.436	Ailuropoda_melanoleuca
ENSTBEG00000015884	LSM1	52	93.443	ENSACIG00000019593	lsm1	51	93.443	Amphilophus_citrinellus
ENSTBEG00000015884	LSM1	100	83.761	ENSAOCG00000017997	-	88	83.761	Amphiprion_ocellaris
ENSTBEG00000015884	LSM1	100	83.761	ENSAOCG00000017096	lsm1	88	83.761	Amphiprion_ocellaris
ENSTBEG00000015884	LSM1	100	83.761	ENSAPEG00000011669	lsm1	88	83.761	Amphiprion_percula
ENSTBEG00000015884	LSM1	100	82.051	ENSATEG00000022266	lsm1	88	82.051	Anabas_testudineus
ENSTBEG00000015884	LSM1	100	97.436	ENSANAG00000027785	LSM1	88	97.436	Aotus_nancymaae
ENSTBEG00000015884	LSM1	100	82.051	ENSACLG00000011400	lsm1	88	82.051	Astatotilapia_calliptera
ENSTBEG00000015884	LSM1	100	82.906	ENSAMXG00000005441	lsm1	88	82.906	Astyanax_mexicanus
ENSTBEG00000015884	LSM1	100	96.581	ENSBTAG00000001612	LSM1	88	96.581	Bos_taurus
ENSTBEG00000015884	LSM1	68	56.962	WBGene00003076	lsm-1	62	56.962	Caenorhabditis_elegans
ENSTBEG00000015884	LSM1	100	96.581	ENSCJAG00000048015	LSM1	88	96.581	Callithrix_jacchus
ENSTBEG00000015884	LSM1	100	97.436	ENSCAFG00000006113	LSM1	88	97.436	Canis_familiaris
ENSTBEG00000015884	LSM1	100	97.436	ENSCAFG00020001822	LSM1	88	97.436	Canis_lupus_dingo
ENSTBEG00000015884	LSM1	100	97.436	ENSCHIG00000013194	LSM1	88	97.436	Capra_hircus
ENSTBEG00000015884	LSM1	100	97.436	ENSTSYG00000010394	LSM1	88	97.436	Carlito_syrichta
ENSTBEG00000015884	LSM1	100	97.436	ENSCPOG00000032671	LSM1	88	97.436	Cavia_porcellus
ENSTBEG00000015884	LSM1	100	97.436	ENSCCAG00000037171	LSM1	88	97.436	Cebus_capucinus
ENSTBEG00000015884	LSM1	100	97.436	ENSCATG00000020377	LSM1	88	97.436	Cercocebus_atys
ENSTBEG00000015884	LSM1	100	97.436	ENSCLAG00000001137	LSM1	88	97.436	Chinchilla_lanigera
ENSTBEG00000015884	LSM1	100	97.436	ENSCSAG00000015485	LSM1	88	97.436	Chlorocebus_sabaeus
ENSTBEG00000015884	LSM1	100	96.581	ENSCHOG00000006030	LSM1	88	96.581	Choloepus_hoffmanni
ENSTBEG00000015884	LSM1	100	94.017	ENSCPBG00000006569	LSM1	79	94.017	Chrysemys_picta_bellii
ENSTBEG00000015884	LSM1	99	62.931	ENSCING00000013536	-	87	62.931	Ciona_intestinalis
ENSTBEG00000015884	LSM1	100	97.436	ENSCANG00000019173	LSM1	88	97.436	Colobus_angolensis_palliatus
ENSTBEG00000015884	LSM1	100	98.291	ENSCGRG00001024560	-	88	98.291	Cricetulus_griseus_chok1gshd
ENSTBEG00000015884	LSM1	83	81.373	ENSCGRG00001002259	-	89	81.373	Cricetulus_griseus_chok1gshd
ENSTBEG00000015884	LSM1	83	81.373	ENSCGRG00000013603	-	89	81.373	Cricetulus_griseus_crigri
ENSTBEG00000015884	LSM1	100	98.291	ENSCGRG00000006554	-	88	98.291	Cricetulus_griseus_crigri
ENSTBEG00000015884	LSM1	100	81.197	ENSCSEG00000010570	lsm1	81	81.197	Cynoglossus_semilaevis
ENSTBEG00000015884	LSM1	100	81.197	ENSCSEG00000008319	lsm1	81	81.197	Cynoglossus_semilaevis
ENSTBEG00000015884	LSM1	100	81.197	ENSCVAG00000003871	lsm1	88	81.197	Cyprinodon_variegatus
ENSTBEG00000015884	LSM1	100	82.051	ENSDARG00000043177	lsm1	88	82.051	Danio_rerio
ENSTBEG00000015884	LSM1	100	97.436	ENSDNOG00000046387	-	88	97.436	Dasypus_novemcinctus
ENSTBEG00000015884	LSM1	100	97.436	ENSDNOG00000032911	-	88	97.436	Dasypus_novemcinctus
ENSTBEG00000015884	LSM1	87	78.431	ENSDNOG00000046620	-	86	78.431	Dasypus_novemcinctus
ENSTBEG00000015884	LSM1	99	91.379	ENSDNOG00000030989	-	87	91.379	Dasypus_novemcinctus
ENSTBEG00000015884	LSM1	100	97.436	ENSDORG00000028172	Lsm1	88	97.436	Dipodomys_ordii
ENSTBEG00000015884	LSM1	92	66.667	FBgn0261067	LSm1	79	66.667	Drosophila_melanogaster
ENSTBEG00000015884	LSM1	100	97.436	ENSEASG00005016677	LSM1	88	97.436	Equus_asinus_asinus
ENSTBEG00000015884	LSM1	100	97.436	ENSECAG00000010461	LSM1	88	97.436	Equus_caballus
ENSTBEG00000015884	LSM1	100	64.103	ENSEEUG00000015181	LSM1	84	64.103	Erinaceus_europaeus
ENSTBEG00000015884	LSM1	100	83.761	ENSELUG00000002322	lsm1	88	83.761	Esox_lucius
ENSTBEG00000015884	LSM1	100	82.051	ENSELUG00000023374	lsm1	88	82.051	Esox_lucius
ENSTBEG00000015884	LSM1	100	97.436	ENSFCAG00000039335	LSM1	88	97.436	Felis_catus
ENSTBEG00000015884	LSM1	100	93.162	ENSFALG00000006723	LSM1	99	93.162	Ficedula_albicollis
ENSTBEG00000015884	LSM1	100	97.436	ENSFDAG00000007658	LSM1	88	97.436	Fukomys_damarensis
ENSTBEG00000015884	LSM1	100	81.197	ENSFHEG00000009556	lsm1	88	81.197	Fundulus_heteroclitus
ENSTBEG00000015884	LSM1	100	80.342	ENSGMOG00000016651	lsm1	86	80.342	Gadus_morhua
ENSTBEG00000015884	LSM1	100	90.598	ENSGALG00000003245	LSM1	88	90.598	Gallus_gallus
ENSTBEG00000015884	LSM1	100	81.197	ENSGAFG00000011355	lsm1	88	81.197	Gambusia_affinis
ENSTBEG00000015884	LSM1	100	82.051	ENSGACG00000011763	lsm1	86	82.051	Gasterosteus_aculeatus
ENSTBEG00000015884	LSM1	100	94.017	ENSGAGG00000024065	LSM1	88	94.017	Gopherus_agassizii
ENSTBEG00000015884	LSM1	100	97.436	ENSGGOG00000022658	LSM1	88	97.436	Gorilla_gorilla
ENSTBEG00000015884	LSM1	100	82.051	ENSHBUG00000010897	lsm1	88	82.051	Haplochromis_burtoni
ENSTBEG00000015884	LSM1	100	97.436	ENSHGLG00000005711	LSM1	88	97.436	Heterocephalus_glaber_female
ENSTBEG00000015884	LSM1	94	86.364	ENSHGLG00000017574	-	93	86.364	Heterocephalus_glaber_female
ENSTBEG00000015884	LSM1	100	97.436	ENSHGLG00100017660	LSM1	88	97.436	Heterocephalus_glaber_male
ENSTBEG00000015884	LSM1	94	86.364	ENSHGLG00100012152	-	93	86.364	Heterocephalus_glaber_male
ENSTBEG00000015884	LSM1	100	82.906	ENSHCOG00000017233	lsm1	88	82.906	Hippocampus_comes
ENSTBEG00000015884	LSM1	100	81.197	ENSIPUG00000002312	LSM1	88	81.197	Ictalurus_punctatus
ENSTBEG00000015884	LSM1	52	98.361	ENSSTOG00000026870	LSM1	74	98.361	Ictidomys_tridecemlineatus
ENSTBEG00000015884	LSM1	100	97.436	ENSJJAG00000014605	-	88	97.436	Jaculus_jaculus
ENSTBEG00000015884	LSM1	100	82.051	ENSKMAG00000003016	lsm1	88	82.051	Kryptolebias_marmoratus
ENSTBEG00000015884	LSM1	100	82.051	ENSLBEG00000022352	lsm1	88	82.051	Labrus_bergylta
ENSTBEG00000015884	LSM1	100	88.889	ENSLACG00000010947	LSM1	97	88.889	Latimeria_chalumnae
ENSTBEG00000015884	LSM1	100	91.453	ENSLOCG00000015149	lsm1	88	91.453	Lepisosteus_oculatus
ENSTBEG00000015884	LSM1	100	97.436	ENSLAFG00000003534	LSM1	88	97.436	Loxodonta_africana
ENSTBEG00000015884	LSM1	100	97.436	ENSMFAG00000032661	LSM1	88	97.436	Macaca_fascicularis
ENSTBEG00000015884	LSM1	100	97.436	ENSMLEG00000034535	LSM1	88	97.436	Mandrillus_leucophaeus
ENSTBEG00000015884	LSM1	100	82.051	ENSMAMG00000007464	lsm1	88	82.051	Mastacembelus_armatus
ENSTBEG00000015884	LSM1	100	82.051	ENSMZEG00005010321	lsm1	88	82.051	Maylandia_zebra
ENSTBEG00000015884	LSM1	100	90.598	ENSMGAG00000002125	LSM1	88	90.598	Meleagris_gallopavo
ENSTBEG00000015884	LSM1	100	96.581	ENSMICG00000030726	LSM1	88	96.581	Microcebus_murinus
ENSTBEG00000015884	LSM1	100	98.291	ENSMOCG00000022817	Lsm1	88	98.291	Microtus_ochrogaster
ENSTBEG00000015884	LSM1	100	82.906	ENSMMOG00000015466	lsm1	88	82.906	Mola_mola
ENSTBEG00000015884	LSM1	100	95.726	ENSMODG00000010732	-	88	95.726	Monodelphis_domestica
ENSTBEG00000015884	LSM1	52	93.443	ENSMALG00000001478	lsm1	65	93.443	Monopterus_albus
ENSTBEG00000015884	LSM1	100	96.581	MGP_CAROLIEiJ_G0030930	Lsm1	88	96.581	Mus_caroli
ENSTBEG00000015884	LSM1	100	96.581	ENSMUSG00000037296	Lsm1	88	96.581	Mus_musculus
ENSTBEG00000015884	LSM1	100	96.581	MGP_PahariEiJ_G0021400	Lsm1	88	96.581	Mus_pahari
ENSTBEG00000015884	LSM1	100	96.581	MGP_SPRETEiJ_G0032049	Lsm1	88	96.581	Mus_spretus
ENSTBEG00000015884	LSM1	100	96.581	ENSMPUG00000009883	LSM1	88	96.581	Mustela_putorius_furo
ENSTBEG00000015884	LSM1	100	96.581	ENSMLUG00000003734	LSM1	88	96.581	Myotis_lucifugus
ENSTBEG00000015884	LSM1	100	96.581	ENSNGAG00000003753	Lsm1	88	96.581	Nannospalax_galili
ENSTBEG00000015884	LSM1	52	93.443	ENSNBRG00000017370	lsm1	53	93.443	Neolamprologus_brichardi
ENSTBEG00000015884	LSM1	100	97.436	ENSNLEG00000029390	LSM1	88	97.436	Nomascus_leucogenys
ENSTBEG00000015884	LSM1	100	95.726	ENSMEUG00000014077	LSM1	88	95.726	Notamacropus_eugenii
ENSTBEG00000015884	LSM1	100	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSTBEG00000015884	LSM1	100	97.436	ENSODEG00000004834	LSM1	88	97.436	Octodon_degus
ENSTBEG00000015884	LSM1	100	82.051	ENSONIG00000010782	lsm1	88	82.051	Oreochromis_niloticus
ENSTBEG00000015884	LSM1	100	94.872	ENSOANG00000003256	LSM1	88	94.872	Ornithorhynchus_anatinus
ENSTBEG00000015884	LSM1	100	97.436	ENSOCUG00000015399	LSM1	88	97.436	Oryctolagus_cuniculus
ENSTBEG00000015884	LSM1	100	83.761	ENSORLG00000030288	lsm1	88	83.761	Oryzias_latipes
ENSTBEG00000015884	LSM1	100	83.761	ENSORLG00020003941	lsm1	88	83.761	Oryzias_latipes_hni
ENSTBEG00000015884	LSM1	100	82.051	ENSORLG00020006213	-	76	82.051	Oryzias_latipes_hni
ENSTBEG00000015884	LSM1	100	83.761	ENSORLG00015018350	lsm1	88	83.761	Oryzias_latipes_hsok
ENSTBEG00000015884	LSM1	100	82.051	ENSOMEG00000012454	lsm1	88	82.051	Oryzias_melastigma
ENSTBEG00000015884	LSM1	100	97.436	ENSOGAG00000015161	LSM1	88	97.436	Otolemur_garnettii
ENSTBEG00000015884	LSM1	100	97.436	ENSOARG00000001317	LSM1	88	97.436	Ovis_aries
ENSTBEG00000015884	LSM1	100	97.436	ENSPPAG00000032279	LSM1	88	97.436	Pan_paniscus
ENSTBEG00000015884	LSM1	100	97.436	ENSPPRG00000014172	-	88	97.436	Panthera_pardus
ENSTBEG00000015884	LSM1	100	97.436	ENSPTIG00000010289	LSM1	88	97.436	Panthera_tigris_altaica
ENSTBEG00000015884	LSM1	100	97.436	ENSPTRG00000020169	LSM1	88	97.436	Pan_troglodytes
ENSTBEG00000015884	LSM1	100	97.436	ENSPANG00000008814	LSM1	88	97.436	Papio_anubis
ENSTBEG00000015884	LSM1	100	79.487	ENSPKIG00000019409	LSM1	87	79.487	Paramormyrops_kingsleyae
ENSTBEG00000015884	LSM1	100	86.325	ENSPKIG00000001839	lsm1	88	86.325	Paramormyrops_kingsleyae
ENSTBEG00000015884	LSM1	100	94.017	ENSPSIG00000012563	LSM1	90	94.017	Pelodiscus_sinensis
ENSTBEG00000015884	LSM1	52	93.443	ENSPMGG00000022999	lsm1	58	93.443	Periophthalmus_magnuspinnatus
ENSTBEG00000015884	LSM1	97	78.761	ENSPMAG00000002671	lsm1	100	78.761	Petromyzon_marinus
ENSTBEG00000015884	LSM1	100	94.017	ENSPCIG00000008880	LSM1	88	94.017	Phascolarctos_cinereus
ENSTBEG00000015884	LSM1	100	81.197	ENSPFOG00000016029	lsm1	88	81.197	Poecilia_formosa
ENSTBEG00000015884	LSM1	100	81.197	ENSPLAG00000007879	lsm1	88	81.197	Poecilia_latipinna
ENSTBEG00000015884	LSM1	100	81.197	ENSPMEG00000023550	lsm1	88	81.197	Poecilia_mexicana
ENSTBEG00000015884	LSM1	100	81.197	ENSPREG00000009574	lsm1	88	81.197	Poecilia_reticulata
ENSTBEG00000015884	LSM1	100	97.436	ENSPPYG00000018521	LSM1	88	97.436	Pongo_abelii
ENSTBEG00000015884	LSM1	100	97.436	ENSPCOG00000020901	-	88	97.436	Propithecus_coquereli
ENSTBEG00000015884	LSM1	100	97.436	ENSPVAG00000006016	LSM1	88	97.436	Pteropus_vampyrus
ENSTBEG00000015884	LSM1	100	82.051	ENSPNYG00000018067	lsm1	88	82.051	Pundamilia_nyererei
ENSTBEG00000015884	LSM1	100	82.051	ENSPNAG00000013707	lsm1	88	82.051	Pygocentrus_nattereri
ENSTBEG00000015884	LSM1	100	96.581	ENSRNOG00000015375	Lsm1	88	96.581	Rattus_norvegicus
ENSTBEG00000015884	LSM1	100	97.436	ENSRBIG00000027449	LSM1	88	97.436	Rhinopithecus_bieti
ENSTBEG00000015884	LSM1	100	97.436	ENSRROG00000036074	LSM1	88	97.436	Rhinopithecus_roxellana
ENSTBEG00000015884	LSM1	91	43.243	YJL124C	LSM1	64	43.243	Saccharomyces_cerevisiae
ENSTBEG00000015884	LSM1	100	95.726	ENSSHAG00000017260	LSM1	88	95.726	Sarcophilus_harrisii
ENSTBEG00000015884	LSM1	100	88.034	ENSSFOG00015019528	lsm1	88	88.034	Scleropages_formosus
ENSTBEG00000015884	LSM1	100	82.051	ENSSMAG00000004930	lsm1	88	82.051	Scophthalmus_maximus
ENSTBEG00000015884	LSM1	100	82.051	ENSSDUG00000021823	lsm1	88	82.051	Seriola_dumerili
ENSTBEG00000015884	LSM1	100	82.051	ENSSLDG00000012154	lsm1	88	82.051	Seriola_lalandi_dorsalis
ENSTBEG00000015884	LSM1	100	94.017	ENSSPUG00000014878	LSM1	88	94.017	Sphenodon_punctatus
ENSTBEG00000015884	LSM1	100	82.906	ENSSPAG00000020548	lsm1	88	82.906	Stegastes_partitus
ENSTBEG00000015884	LSM1	100	97.436	ENSSSCG00000039058	LSM1	88	97.436	Sus_scrofa
ENSTBEG00000015884	LSM1	100	93.162	ENSTGUG00000004793	LSM1	88	93.162	Taeniopygia_guttata
ENSTBEG00000015884	LSM1	100	84.615	ENSTRUG00000025239	lsm1	88	84.615	Takifugu_rubripes
ENSTBEG00000015884	LSM1	100	84.615	ENSTNIG00000004055	lsm1	88	84.615	Tetraodon_nigroviridis
ENSTBEG00000015884	LSM1	100	97.436	ENSTTRG00000004482	LSM1	88	97.436	Tursiops_truncatus
ENSTBEG00000015884	LSM1	100	97.436	ENSUAMG00000004103	LSM1	88	97.436	Ursus_americanus
ENSTBEG00000015884	LSM1	100	97.436	ENSUMAG00000009132	LSM1	88	97.436	Ursus_maritimus
ENSTBEG00000015884	LSM1	52	98.361	ENSVPAG00000011593	LSM1	80	98.361	Vicugna_pacos
ENSTBEG00000015884	LSM1	100	97.436	ENSVVUG00000020191	LSM1	88	97.436	Vulpes_vulpes
ENSTBEG00000015884	LSM1	60	68.571	ENSVVUG00000014880	-	74	68.571	Vulpes_vulpes
ENSTBEG00000015884	LSM1	100	90.083	ENSXETG00000009004	lsm1	88	90.083	Xenopus_tropicalis
ENSTBEG00000015884	LSM1	100	80.342	ENSXCOG00000015631	lsm1	88	80.342	Xiphophorus_couchianus
ENSTBEG00000015884	LSM1	100	80.342	ENSXMAG00000026637	lsm1	88	80.342	Xiphophorus_maculatus