EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000000067 (Gene tree)
Gene ID: 100226245
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Plus strand
Length: 5141 bases
Position: chr28:429827-434967
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000000065	LSM	PF01423.22	2.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000000065	LSM7-201	831	-	ENSTGUP00000000065	101 (aa)	-	H0YP68

Gene Model

Click here to download ENSTGUG00000000067's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03018	RNA degradation	KEGG
tgu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000000067's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000000067	LSM7	59	36.667	ENSTGUG00000004149	SNRPG	69	36.667
ENSTGUG00000000067	LSM7	73	36.842	ENSTGUG00000004730	-	73	36.842
ENSTGUG00000000067	LSM7	73	36.842	ENSTGUG00000016823	-	73	36.842

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000000067	LSM7	100	97.030	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSTGUG00000000067	LSM7	93	96.809	ENSAPOG00000015573	lsm7	81	96.809	Acanthochromis_polyacanthus
ENSTGUG00000000067	LSM7	100	96.040	ENSAMEG00000005484	LSM7	98	96.040	Ailuropoda_melanoleuca
ENSTGUG00000000067	LSM7	96	95.876	ENSACIG00000006498	lsm7	77	95.876	Amphilophus_citrinellus
ENSTGUG00000000067	LSM7	100	97.030	ENSAOCG00000001077	lsm7	92	97.030	Amphiprion_ocellaris
ENSTGUG00000000067	LSM7	100	97.030	ENSAPEG00000000694	lsm7	98	97.030	Amphiprion_percula
ENSTGUG00000000067	LSM7	100	97.030	ENSAPEG00000024447	lsm7	92	97.030	Amphiprion_percula
ENSTGUG00000000067	LSM7	100	97.030	ENSATEG00000008557	lsm7	98	97.030	Anabas_testudineus
ENSTGUG00000000067	LSM7	100	97.030	ENSANAG00000037196	-	98	97.030	Aotus_nancymaae
ENSTGUG00000000067	LSM7	100	88.119	ENSANAG00000022222	-	98	88.119	Aotus_nancymaae
ENSTGUG00000000067	LSM7	100	96.040	ENSACLG00000021021	lsm7	98	96.040	Astatotilapia_calliptera
ENSTGUG00000000067	LSM7	100	96.040	ENSAMXG00000037622	lsm7	98	96.040	Astyanax_mexicanus
ENSTGUG00000000067	LSM7	100	97.030	ENSBTAG00000004521	LSM7	98	97.030	Bos_taurus
ENSTGUG00000000067	LSM7	99	58.000	WBGene00003081	lsm-7	96	58.000	Caenorhabditis_elegans
ENSTGUG00000000067	LSM7	53	98.148	ENSCJAG00000039713	-	66	98.148	Callithrix_jacchus
ENSTGUG00000000067	LSM7	100	96.040	ENSCAFG00000019409	LSM7	98	96.040	Canis_familiaris
ENSTGUG00000000067	LSM7	99	97.000	ENSCAFG00020018168	LSM7	74	97.000	Canis_lupus_dingo
ENSTGUG00000000067	LSM7	100	97.030	ENSCHIG00000023663	LSM7	98	97.030	Capra_hircus
ENSTGUG00000000067	LSM7	70	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSTGUG00000000067	LSM7	100	97.030	ENSCPOG00000014025	LSM7	100	97.030	Cavia_porcellus
ENSTGUG00000000067	LSM7	100	97.030	ENSCCAG00000035456	LSM7	99	97.030	Cebus_capucinus
ENSTGUG00000000067	LSM7	100	97.030	ENSCATG00000023543	LSM7	98	97.030	Cercocebus_atys
ENSTGUG00000000067	LSM7	100	97.030	ENSCLAG00000011635	LSM7	98	97.030	Chinchilla_lanigera
ENSTGUG00000000067	LSM7	100	97.030	ENSCSAG00000011599	LSM7	98	97.030	Chlorocebus_sabaeus
ENSTGUG00000000067	LSM7	71	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSTGUG00000000067	LSM7	95	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSTGUG00000000067	LSM7	100	97.030	ENSCANG00000035525	LSM7	98	97.030	Colobus_angolensis_palliatus
ENSTGUG00000000067	LSM7	89	86.667	ENSCGRG00001016005	-	92	86.667	Cricetulus_griseus_chok1gshd
ENSTGUG00000000067	LSM7	100	96.040	ENSCGRG00001000807	-	98	96.040	Cricetulus_griseus_chok1gshd
ENSTGUG00000000067	LSM7	100	96.040	ENSCGRG00000014355	-	97	96.040	Cricetulus_griseus_crigri
ENSTGUG00000000067	LSM7	89	86.667	ENSCGRG00000006821	-	92	86.667	Cricetulus_griseus_crigri
ENSTGUG00000000067	LSM7	100	97.030	ENSCSEG00000014900	lsm7	86	97.030	Cynoglossus_semilaevis
ENSTGUG00000000067	LSM7	100	98.020	ENSCVAG00000021091	lsm7	94	98.020	Cyprinodon_variegatus
ENSTGUG00000000067	LSM7	100	96.040	ENSDARG00000058328	lsm7	98	96.040	Danio_rerio
ENSTGUG00000000067	LSM7	100	95.050	ENSDORG00000024460	Lsm7	99	95.050	Dipodomys_ordii
ENSTGUG00000000067	LSM7	96	74.490	FBgn0261068	LSm7	89	74.490	Drosophila_melanogaster
ENSTGUG00000000067	LSM7	100	94.059	ENSETEG00000012788	LSM7	99	94.059	Echinops_telfairi
ENSTGUG00000000067	LSM7	82	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSTGUG00000000067	LSM7	100	84.158	ENSEBUG00000016992	lsm7	97	84.158	Eptatretus_burgeri
ENSTGUG00000000067	LSM7	100	93.069	ENSECAG00000001440	LSM7	65	93.069	Equus_caballus
ENSTGUG00000000067	LSM7	100	96.040	ENSFCAG00000003445	LSM7	98	96.040	Felis_catus
ENSTGUG00000000067	LSM7	100	100.000	ENSFALG00000011912	LSM7	100	100.000	Ficedula_albicollis
ENSTGUG00000000067	LSM7	95	96.875	ENSFDAG00000007661	LSM7	100	96.875	Fukomys_damarensis
ENSTGUG00000000067	LSM7	100	98.020	ENSFHEG00000006349	lsm7	90	98.020	Fundulus_heteroclitus
ENSTGUG00000000067	LSM7	100	95.050	ENSGMOG00000013320	lsm7	98	95.050	Gadus_morhua
ENSTGUG00000000067	LSM7	100	98.020	ENSGAFG00000013902	lsm7	98	98.020	Gambusia_affinis
ENSTGUG00000000067	LSM7	100	96.040	ENSGACG00000010390	lsm7	98	96.040	Gasterosteus_aculeatus
ENSTGUG00000000067	LSM7	100	97.030	ENSGGOG00000010172	LSM7	98	97.030	Gorilla_gorilla
ENSTGUG00000000067	LSM7	100	96.040	ENSHBUG00000004616	lsm7	98	96.040	Haplochromis_burtoni
ENSTGUG00000000067	LSM7	100	97.030	ENSHGLG00000010587	LSM7	98	97.030	Heterocephalus_glaber_female
ENSTGUG00000000067	LSM7	100	97.030	ENSHGLG00100000852	LSM7	98	97.030	Heterocephalus_glaber_male
ENSTGUG00000000067	LSM7	100	96.040	ENSHCOG00000020252	lsm7	100	96.040	Hippocampus_comes
ENSTGUG00000000067	LSM7	100	96.040	ENSIPUG00000024724	lsm7	98	96.040	Ictalurus_punctatus
ENSTGUG00000000067	LSM7	100	97.030	ENSSTOG00000028372	LSM7	99	97.030	Ictidomys_tridecemlineatus
ENSTGUG00000000067	LSM7	99	97.000	ENSJJAG00000001936	Lsm7	97	97.000	Jaculus_jaculus
ENSTGUG00000000067	LSM7	100	98.020	ENSKMAG00000022151	lsm7	98	98.020	Kryptolebias_marmoratus
ENSTGUG00000000067	LSM7	100	97.030	ENSLBEG00000005203	lsm7	98	97.030	Labrus_bergylta
ENSTGUG00000000067	LSM7	100	98.020	ENSLACG00000015700	LSM7	98	98.020	Latimeria_chalumnae
ENSTGUG00000000067	LSM7	100	97.030	ENSLOCG00000004356	lsm7	98	97.030	Lepisosteus_oculatus
ENSTGUG00000000067	LSM7	100	97.030	ENSLAFG00000029302	LSM7	98	97.030	Loxodonta_africana
ENSTGUG00000000067	LSM7	100	97.030	ENSMFAG00000044572	LSM7	98	97.030	Macaca_fascicularis
ENSTGUG00000000067	LSM7	100	97.030	ENSMMUG00000000452	LSM7	99	97.030	Macaca_mulatta
ENSTGUG00000000067	LSM7	100	97.030	ENSMNEG00000004393	LSM7	98	97.030	Macaca_nemestrina
ENSTGUG00000000067	LSM7	100	97.030	ENSMLEG00000030852	LSM7	100	97.030	Mandrillus_leucophaeus
ENSTGUG00000000067	LSM7	100	96.040	ENSMAMG00000005410	lsm7	98	96.040	Mastacembelus_armatus
ENSTGUG00000000067	LSM7	100	96.040	ENSMZEG00005028055	lsm7	98	96.040	Maylandia_zebra
ENSTGUG00000000067	LSM7	100	99.010	ENSMGAG00000000750	LSM7	87	99.010	Meleagris_gallopavo
ENSTGUG00000000067	LSM7	100	96.040	ENSMAUG00000009276	Lsm7	98	96.040	Mesocricetus_auratus
ENSTGUG00000000067	LSM7	100	97.030	ENSMICG00000009988	-	98	97.030	Microcebus_murinus
ENSTGUG00000000067	LSM7	100	97.030	ENSMICG00000028619	-	98	97.030	Microcebus_murinus
ENSTGUG00000000067	LSM7	100	96.040	ENSMOCG00000016925	Lsm7	98	96.040	Microtus_ochrogaster
ENSTGUG00000000067	LSM7	100	97.030	ENSMMOG00000019645	lsm7	96	97.030	Mola_mola
ENSTGUG00000000067	LSM7	100	98.020	ENSMODG00000004722	LSM7	98	98.020	Monodelphis_domestica
ENSTGUG00000000067	LSM7	100	96.040	ENSMALG00000014511	lsm7	78	96.040	Monopterus_albus
ENSTGUG00000000067	LSM7	99	96.000	MGP_CAROLIEiJ_G0015607	Lsm7	97	96.000	Mus_caroli
ENSTGUG00000000067	LSM7	99	96.000	ENSMUSG00000035215	Lsm7	97	96.000	Mus_musculus
ENSTGUG00000000067	LSM7	99	96.000	MGP_PahariEiJ_G0031020	Lsm7	97	96.000	Mus_pahari
ENSTGUG00000000067	LSM7	99	96.000	MGP_SPRETEiJ_G0016425	Lsm7	97	96.000	Mus_spretus
ENSTGUG00000000067	LSM7	100	96.040	ENSMLUG00000013097	-	98	96.040	Myotis_lucifugus
ENSTGUG00000000067	LSM7	99	91.000	ENSMLUG00000024002	-	92	91.000	Myotis_lucifugus
ENSTGUG00000000067	LSM7	100	95.050	ENSNGAG00000021637	Lsm7	98	95.050	Nannospalax_galili
ENSTGUG00000000067	LSM7	100	96.040	ENSNBRG00000015770	lsm7	87	96.040	Neolamprologus_brichardi
ENSTGUG00000000067	LSM7	100	96.040	ENSNBRG00000001237	-	81	96.040	Neolamprologus_brichardi
ENSTGUG00000000067	LSM7	100	97.030	ENSNLEG00000002265	LSM7	98	97.030	Nomascus_leucogenys
ENSTGUG00000000067	LSM7	100	76.238	ENSODEG00000008190	-	98	76.238	Octodon_degus
ENSTGUG00000000067	LSM7	100	97.030	ENSODEG00000013590	-	98	97.030	Octodon_degus
ENSTGUG00000000067	LSM7	100	90.099	ENSODEG00000018769	-	98	90.099	Octodon_degus
ENSTGUG00000000067	LSM7	100	96.040	ENSONIG00000001801	lsm7	87	96.040	Oreochromis_niloticus
ENSTGUG00000000067	LSM7	100	97.030	ENSORLG00000023951	lsm7	98	97.030	Oryzias_latipes
ENSTGUG00000000067	LSM7	100	97.030	ENSORLG00020022226	lsm7	98	97.030	Oryzias_latipes_hni
ENSTGUG00000000067	LSM7	100	97.030	ENSORLG00015020044	lsm7	94	97.030	Oryzias_latipes_hsok
ENSTGUG00000000067	LSM7	100	97.030	ENSOMEG00000012806	lsm7	98	97.030	Oryzias_melastigma
ENSTGUG00000000067	LSM7	100	85.149	ENSOGAG00000024373	-	98	85.149	Otolemur_garnettii
ENSTGUG00000000067	LSM7	100	95.050	ENSOGAG00000000144	-	99	95.050	Otolemur_garnettii
ENSTGUG00000000067	LSM7	100	97.030	ENSOARG00000014013	LSM7	98	97.030	Ovis_aries
ENSTGUG00000000067	LSM7	100	97.030	ENSPPAG00000026500	LSM7	98	97.030	Pan_paniscus
ENSTGUG00000000067	LSM7	100	96.040	ENSPPRG00000008624	LSM7	98	96.040	Panthera_pardus
ENSTGUG00000000067	LSM7	100	96.040	ENSPTIG00000016252	LSM7	98	96.040	Panthera_tigris_altaica
ENSTGUG00000000067	LSM7	100	97.030	ENSPTRG00000010233	LSM7	98	97.030	Pan_troglodytes
ENSTGUG00000000067	LSM7	100	97.030	ENSPANG00000020668	LSM7	98	97.030	Papio_anubis
ENSTGUG00000000067	LSM7	100	98.020	ENSPKIG00000011325	lsm7	98	98.020	Paramormyrops_kingsleyae
ENSTGUG00000000067	LSM7	100	99.010	ENSPSIG00000017149	LSM7	89	99.010	Pelodiscus_sinensis
ENSTGUG00000000067	LSM7	100	97.030	ENSPMGG00000006498	lsm7	98	97.030	Periophthalmus_magnuspinnatus
ENSTGUG00000000067	LSM7	100	98.020	ENSPCIG00000030454	LSM7	99	98.020	Phascolarctos_cinereus
ENSTGUG00000000067	LSM7	100	97.030	ENSPFOG00000012467	lsm7	89	97.030	Poecilia_formosa
ENSTGUG00000000067	LSM7	100	97.030	ENSPLAG00000000252	lsm7	94	97.030	Poecilia_latipinna
ENSTGUG00000000067	LSM7	100	97.030	ENSPMEG00000000587	lsm7	94	97.030	Poecilia_mexicana
ENSTGUG00000000067	LSM7	77	78.481	ENSPREG00000016718	lsm7	63	78.481	Poecilia_reticulata
ENSTGUG00000000067	LSM7	72	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSTGUG00000000067	LSM7	100	97.030	ENSPCOG00000017177	LSM7	99	97.030	Propithecus_coquereli
ENSTGUG00000000067	LSM7	100	96.040	ENSPNYG00000006938	lsm7	98	96.040	Pundamilia_nyererei
ENSTGUG00000000067	LSM7	100	96.040	ENSPNAG00000010141	lsm7	99	96.040	Pygocentrus_nattereri
ENSTGUG00000000067	LSM7	99	97.000	ENSRNOG00000019552	Lsm7	97	97.000	Rattus_norvegicus
ENSTGUG00000000067	LSM7	100	97.030	ENSRBIG00000035978	LSM7	98	97.030	Rhinopithecus_bieti
ENSTGUG00000000067	LSM7	100	97.030	ENSRROG00000034044	LSM7	98	97.030	Rhinopithecus_roxellana
ENSTGUG00000000067	LSM7	85	49.438	YNL147W	-	77	49.438	Saccharomyces_cerevisiae
ENSTGUG00000000067	LSM7	100	97.030	ENSSBOG00000034899	LSM7	98	97.030	Saimiri_boliviensis_boliviensis
ENSTGUG00000000067	LSM7	100	96.040	ENSSFOG00015006728	lsm7	98	96.040	Scleropages_formosus
ENSTGUG00000000067	LSM7	100	97.030	ENSSMAG00000004195	lsm7	93	97.030	Scophthalmus_maximus
ENSTGUG00000000067	LSM7	100	97.030	ENSSDUG00000001863	lsm7	98	97.030	Seriola_dumerili
ENSTGUG00000000067	LSM7	100	97.030	ENSSLDG00000016339	lsm7	98	97.030	Seriola_lalandi_dorsalis
ENSTGUG00000000067	LSM7	100	97.030	ENSSPAG00000015221	lsm7	98	97.030	Stegastes_partitus
ENSTGUG00000000067	LSM7	100	97.030	ENSSSCG00000013463	LSM7	99	97.030	Sus_scrofa
ENSTGUG00000000067	LSM7	100	97.030	ENSTRUG00000022913	lsm7	98	97.030	Takifugu_rubripes
ENSTGUG00000000067	LSM7	100	97.030	ENSTNIG00000015525	lsm7	98	97.030	Tetraodon_nigroviridis
ENSTGUG00000000067	LSM7	69	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSTGUG00000000067	LSM7	100	96.040	ENSUAMG00000000912	LSM7	84	96.040	Ursus_americanus
ENSTGUG00000000067	LSM7	99	97.000	ENSUMAG00000006556	LSM7	78	97.000	Ursus_maritimus
ENSTGUG00000000067	LSM7	70	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSTGUG00000000067	LSM7	100	96.040	ENSXETG00000022166	lsm7	100	96.040	Xenopus_tropicalis
ENSTGUG00000000067	LSM7	100	98.020	ENSXCOG00000002572	lsm7	99	98.020	Xiphophorus_couchianus
ENSTGUG00000000067	LSM7	100	98.020	ENSXMAG00000018630	lsm7	98	98.020	Xiphophorus_maculatus