EuRBPDB

Description

Ensembl ID: ENSTGUG00000001027 (Gene tree)
Gene ID: 100190604
Gene Symbol: LSM4
Alias: -
Full Name: Taeniopygia guttata LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated (LSM4)%2C mRNA.
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 5530 bases
Position: chr28:4687860-4693389
Accession: NM_001245518
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000001052	LSM	PF01423.22	1.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000001064	-	779	-	ENSTGUP00000001052	125 (aa)	-	H0YRZ2

Gene Model

Pathways

Pathway ID	Pathway Name	Source
tgu03018	RNA degradation	KEGG
tgu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000001027	LSM4	98	74.194	ENSETEG00000003110	-	100	87.097	Echinops_telfairi
ENSTGUG00000001027	LSM4	92	73.913	ENSPCOG00000014154	-	92	66.957	Propithecus_coquereli