EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000001057 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Plus strand
Length: 17810 bases
Position: chr28:4800460-4818269
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000001085	UPF1_Zn_bind	PF09416.10	1.8e-75	1	1
ENSTGUP00000001084	UPF1_Zn_bind	PF09416.10	2.9e-75	1	1
ENSTGUP00000001085	ResIII	PF04851.15	8.1e-06	1	1
ENSTGUP00000001084	ResIII	PF04851.15	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000001096	UPF1-201	2808	-	ENSTGUP00000001084	936 (aa)	-	H0YS24
ENSTGUT00000001097	UPF1-202	2028	-	ENSTGUP00000001085	676 (aa)	-	H0YS25

Gene Model

Click here to download ENSTGUG00000001057's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03013	RNA transport	KEGG
tgu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000001057's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000001057	UPF1	100	95.428	ENSG00000005007	UPF1	83	89.597	Homo_sapiens
ENSTGUG00000001057	UPF1	100	91.124	ENSAPOG00000023773	upf1	83	87.090	Acanthochromis_polyacanthus
ENSTGUG00000001057	UPF1	100	91.124	ENSAPOG00000010916	-	82	86.809	Acanthochromis_polyacanthus
ENSTGUG00000001057	UPF1	100	94.559	ENSAMEG00000011474	UPF1	83	89.787	Ailuropoda_melanoleuca
ENSTGUG00000001057	UPF1	86	95.719	ENSACIG00000010985	-	81	89.387	Amphilophus_citrinellus
ENSTGUG00000001057	UPF1	100	91.124	ENSACIG00000019949	upf1	82	87.447	Amphilophus_citrinellus
ENSTGUG00000001057	UPF1	100	91.124	ENSAOCG00000018519	upf1	83	86.032	Amphiprion_ocellaris
ENSTGUG00000001057	UPF1	100	91.124	ENSAOCG00000006352	-	82	86.809	Amphiprion_ocellaris
ENSTGUG00000001057	UPF1	100	91.124	ENSAPEG00000006292	-	82	86.809	Amphiprion_percula
ENSTGUG00000001057	UPF1	100	91.124	ENSAPEG00000016344	upf1	83	86.032	Amphiprion_percula
ENSTGUG00000001057	UPF1	100	90.976	ENSATEG00000017867	upf1	81	87.340	Anabas_testudineus
ENSTGUG00000001057	UPF1	100	91.124	ENSATEG00000016606	-	82	86.809	Anabas_testudineus
ENSTGUG00000001057	UPF1	89	98.505	ENSAPLG00000009175	UPF1	82	92.263	Anas_platyrhynchos
ENSTGUG00000001057	UPF1	89	94.992	ENSANAG00000024107	UPF1	77	89.803	Aotus_nancymaae
ENSTGUG00000001057	UPF1	100	90.976	ENSACLG00000007181	upf1	82	87.340	Astatotilapia_calliptera
ENSTGUG00000001057	UPF1	100	91.124	ENSACLG00000022630	-	82	86.809	Astatotilapia_calliptera
ENSTGUG00000001057	UPF1	100	92.456	ENSAMXG00000042187	upf1	82	88.191	Astyanax_mexicanus
ENSTGUG00000001057	UPF1	100	95.428	ENSBTAG00000020922	UPF1	83	90.213	Bos_taurus
ENSTGUG00000001057	UPF1	99	49.040	WBGene00004880	smg-2	83	48.085	Caenorhabditis_elegans
ENSTGUG00000001057	UPF1	100	95.428	ENSCJAG00000019627	UPF1	83	89.597	Callithrix_jacchus
ENSTGUG00000001057	UPF1	100	95.575	ENSCAFG00000014578	UPF1	83	89.703	Canis_familiaris
ENSTGUG00000001057	UPF1	100	95.428	ENSCAFG00020012347	UPF1	83	89.597	Canis_lupus_dingo
ENSTGUG00000001057	UPF1	100	95.280	ENSCHIG00000011018	UPF1	83	90.106	Capra_hircus
ENSTGUG00000001057	UPF1	89	97.162	ENSTSYG00000008877	UPF1	80	91.309	Carlito_syrichta
ENSTGUG00000001057	UPF1	89	97.162	ENSCAPG00000005758	UPF1	78	91.309	Cavia_aperea
ENSTGUG00000001057	UPF1	100	93.796	ENSCPOG00000025463	UPF1	83	89.160	Cavia_porcellus
ENSTGUG00000001057	UPF1	100	95.421	ENSCCAG00000032175	UPF1	83	89.787	Cebus_capucinus
ENSTGUG00000001057	UPF1	88	97.483	ENSCATG00000040306	UPF1	80	91.512	Cercocebus_atys
ENSTGUG00000001057	UPF1	95	92.438	ENSCLAG00000004037	UPF1	82	91.425	Chinchilla_lanigera
ENSTGUG00000001057	UPF1	100	95.133	ENSCSAG00000005276	UPF1	83	89.490	Chlorocebus_sabaeus
ENSTGUG00000001057	UPF1	100	95.582	ENSCPBG00000012513	UPF1	83	90.562	Chrysemys_picta_bellii
ENSTGUG00000001057	UPF1	99	73.421	ENSCING00000021399	-	99	70.721	Ciona_intestinalis
ENSTGUG00000001057	UPF1	99	74.521	ENSCSAVG00000006533	-	82	69.141	Ciona_savignyi
ENSTGUG00000001057	UPF1	90	96.700	ENSCANG00000029819	UPF1	80	91.425	Colobus_angolensis_palliatus
ENSTGUG00000001057	UPF1	100	95.273	ENSCGRG00001021067	Upf1	84	89.468	Cricetulus_griseus_chok1gshd
ENSTGUG00000001057	UPF1	91	95.935	ENSCGRG00000013480	Upf1	81	90.679	Cricetulus_griseus_crigri
ENSTGUG00000001057	UPF1	100	90.828	ENSCSEG00000017239	upf1	83	81.847	Cynoglossus_semilaevis
ENSTGUG00000001057	UPF1	100	90.976	ENSCSEG00000016159	-	82	86.702	Cynoglossus_semilaevis
ENSTGUG00000001057	UPF1	100	90.680	ENSCVAG00000010561	upf1	82	86.596	Cyprinodon_variegatus
ENSTGUG00000001057	UPF1	100	92.308	ENSDARG00000016302	upf1	82	88.085	Danio_rerio
ENSTGUG00000001057	UPF1	91	95.624	ENSDORG00000009984	Upf1	78	90.962	Dipodomys_ordii
ENSTGUG00000001057	UPF1	100	67.057	FBgn0030354	Upf1	77	65.259	Drosophila_melanogaster
ENSTGUG00000001057	UPF1	93	83.732	ENSEBUG00000010069	upf1	96	83.573	Eptatretus_burgeri
ENSTGUG00000001057	UPF1	100	95.280	ENSEASG00005006549	UPF1	83	90.319	Equus_asinus_asinus
ENSTGUG00000001057	UPF1	100	95.280	ENSECAG00000010639	UPF1	83	90.319	Equus_caballus
ENSTGUG00000001057	UPF1	100	90.455	ENSELUG00000012916	-	82	86.561	Esox_lucius
ENSTGUG00000001057	UPF1	100	91.272	ENSELUG00000020917	upf1	89	87.234	Esox_lucius
ENSTGUG00000001057	UPF1	100	95.723	ENSFCAG00000009757	UPF1	83	89.809	Felis_catus
ENSTGUG00000001057	UPF1	93	93.887	ENSFALG00000009312	UPF1	78	91.254	Ficedula_albicollis
ENSTGUG00000001057	UPF1	94	93.849	ENSFDAG00000014816	UPF1	82	91.425	Fukomys_damarensis
ENSTGUG00000001057	UPF1	75	100.000	ENSFHEG00000016276	-	76	90.843	Fundulus_heteroclitus
ENSTGUG00000001057	UPF1	100	89.349	ENSFHEG00000006428	upf1	86	85.426	Fundulus_heteroclitus
ENSTGUG00000001057	UPF1	100	92.319	ENSGMOG00000007541	upf1	83	87.553	Gadus_morhua
ENSTGUG00000001057	UPF1	100	97.041	ENSGALG00000003220	UPF1	83	91.702	Gallus_gallus
ENSTGUG00000001057	UPF1	100	90.533	ENSGAFG00000004831	upf1	83	86.489	Gambusia_affinis
ENSTGUG00000001057	UPF1	71	86.438	ENSGAFG00000015443	-	81	86.438	Gambusia_affinis
ENSTGUG00000001057	UPF1	100	95.858	ENSGAGG00000022217	UPF1	83	90.532	Gopherus_agassizii
ENSTGUG00000001057	UPF1	89	97.162	ENSGGOG00000002608	UPF1	80	91.309	Gorilla_gorilla
ENSTGUG00000001057	UPF1	100	70.103	ENSHBUG00000014694	upf1	92	70.138	Haplochromis_burtoni
ENSTGUG00000001057	UPF1	100	90.976	ENSHBUG00000008939	upf1	90	86.809	Haplochromis_burtoni
ENSTGUG00000001057	UPF1	100	95.428	ENSHGLG00000010900	UPF1	83	89.703	Heterocephalus_glaber_female
ENSTGUG00000001057	UPF1	89	97.329	ENSHGLG00100005904	UPF1	78	89.340	Heterocephalus_glaber_male
ENSTGUG00000001057	UPF1	100	90.828	ENSHCOG00000008918	upf1	81	88.187	Hippocampus_comes
ENSTGUG00000001057	UPF1	100	92.604	ENSIPUG00000005108	UPF1	82	88.298	Ictalurus_punctatus
ENSTGUG00000001057	UPF1	100	95.421	ENSSTOG00000009196	UPF1	83	90.000	Ictidomys_tridecemlineatus
ENSTGUG00000001057	UPF1	100	94.527	ENSJJAG00000023151	Upf1	83	89.574	Jaculus_jaculus
ENSTGUG00000001057	UPF1	100	90.828	ENSKMAG00000004962	upf1	82	86.702	Kryptolebias_marmoratus
ENSTGUG00000001057	UPF1	100	91.568	ENSLBEG00000027848	-	82	86.809	Labrus_bergylta
ENSTGUG00000001057	UPF1	100	90.680	ENSLBEG00000014862	upf1	81	87.128	Labrus_bergylta
ENSTGUG00000001057	UPF1	54	89.109	ENSLACG00000008482	UPF1	72	89.109	Latimeria_chalumnae
ENSTGUG00000001057	UPF1	100	93.195	ENSLOCG00000002072	upf1	82	88.830	Lepisosteus_oculatus
ENSTGUG00000001057	UPF1	100	95.569	ENSLAFG00000014963	UPF1	83	90.319	Loxodonta_africana
ENSTGUG00000001057	UPF1	100	95.428	ENSMFAG00000037748	UPF1	83	89.787	Macaca_fascicularis
ENSTGUG00000001057	UPF1	100	95.569	ENSMMUG00000023286	UPF1	83	90.000	Macaca_mulatta
ENSTGUG00000001057	UPF1	100	95.428	ENSMNEG00000000046	UPF1	83	89.787	Macaca_nemestrina
ENSTGUG00000001057	UPF1	89	97.329	ENSMLEG00000028404	UPF1	82	91.425	Mandrillus_leucophaeus
ENSTGUG00000001057	UPF1	100	90.976	ENSMAMG00000006229	upf1	81	87.234	Mastacembelus_armatus
ENSTGUG00000001057	UPF1	100	90.828	ENSMAMG00000006231	-	82	86.596	Mastacembelus_armatus
ENSTGUG00000001057	UPF1	100	91.124	ENSMZEG00005016386	-	82	86.809	Maylandia_zebra
ENSTGUG00000001057	UPF1	100	90.976	ENSMZEG00005003489	upf1	82	87.340	Maylandia_zebra
ENSTGUG00000001057	UPF1	89	98.331	ENSMGAG00000004745	UPF1	82	91.773	Meleagris_gallopavo
ENSTGUG00000001057	UPF1	94	92.779	ENSMAUG00000011398	Upf1	77	90.962	Mesocricetus_auratus
ENSTGUG00000001057	UPF1	100	95.428	ENSMICG00000001659	UPF1	84	89.915	Microcebus_murinus
ENSTGUG00000001057	UPF1	100	95.126	ENSMOCG00000005699	Upf1	83	89.255	Microtus_ochrogaster
ENSTGUG00000001057	UPF1	100	89.941	ENSMMOG00000007881	upf1	83	86.489	Mola_mola
ENSTGUG00000001057	UPF1	89	94.684	ENSMMOG00000007537	-	81	86.374	Mola_mola
ENSTGUG00000001057	UPF1	100	94.860	ENSMODG00000003689	UPF1	83	89.524	Monodelphis_domestica
ENSTGUG00000001057	UPF1	100	90.680	ENSMALG00000018100	-	82	86.064	Monopterus_albus
ENSTGUG00000001057	UPF1	100	90.976	ENSMALG00000000144	upf1	84	87.193	Monopterus_albus
ENSTGUG00000001057	UPF1	100	95.273	MGP_CAROLIEiJ_G0031142	Upf1	83	89.468	Mus_caroli
ENSTGUG00000001057	UPF1	100	95.273	ENSMUSG00000058301	Upf1	83	89.468	Mus_musculus
ENSTGUG00000001057	UPF1	100	95.273	MGP_PahariEiJ_G0021607	Upf1	83	89.468	Mus_pahari
ENSTGUG00000001057	UPF1	100	95.273	MGP_SPRETEiJ_G0032260	Upf1	83	89.468	Mus_spretus
ENSTGUG00000001057	UPF1	100	95.428	ENSMPUG00000015516	UPF1	83	89.597	Mustela_putorius_furo
ENSTGUG00000001057	UPF1	99	94.830	ENSMLUG00000012122	UPF1	82	89.446	Myotis_lucifugus
ENSTGUG00000001057	UPF1	100	95.421	ENSNGAG00000024107	Upf1	83	89.468	Nannospalax_galili
ENSTGUG00000001057	UPF1	100	87.270	ENSNBRG00000022069	-	81	88.208	Neolamprologus_brichardi
ENSTGUG00000001057	UPF1	100	90.976	ENSNBRG00000000670	upf1	83	87.340	Neolamprologus_brichardi
ENSTGUG00000001057	UPF1	92	84.571	ENSNLEG00000006062	UPF1	81	84.571	Nomascus_leucogenys
ENSTGUG00000001057	UPF1	72	100.000	ENSMEUG00000014146	-	66	76.803	Notamacropus_eugenii
ENSTGUG00000001057	UPF1	86	97.561	ENSOPRG00000014018	UPF1	78	97.561	Ochotona_princeps
ENSTGUG00000001057	UPF1	100	94.231	ENSODEG00000012426	UPF1	83	89.255	Octodon_degus
ENSTGUG00000001057	UPF1	100	91.124	ENSONIG00000012729	-	82	86.809	Oreochromis_niloticus
ENSTGUG00000001057	UPF1	100	91.124	ENSONIG00000010452	upf1	82	87.340	Oreochromis_niloticus
ENSTGUG00000001057	UPF1	100	95.414	ENSOANG00000004568	UPF1	83	89.597	Ornithorhynchus_anatinus
ENSTGUG00000001057	UPF1	100	91.272	ENSORLG00000008453	upf1	82	86.489	Oryzias_latipes
ENSTGUG00000001057	UPF1	100	91.137	ENSORLG00020014758	upf1	82	86.489	Oryzias_latipes_hni
ENSTGUG00000001057	UPF1	100	91.137	ENSORLG00015010165	upf1	82	86.489	Oryzias_latipes_hsok
ENSTGUG00000001057	UPF1	100	90.680	ENSOMEG00000003665	upf1	82	86.489	Oryzias_melastigma
ENSTGUG00000001057	UPF1	100	95.280	ENSOGAG00000012866	UPF1	83	89.490	Otolemur_garnettii
ENSTGUG00000001057	UPF1	99	93.890	ENSOARG00000010739	UPF1	86	89.091	Ovis_aries
ENSTGUG00000001057	UPF1	90	96.700	ENSPPAG00000043884	UPF1	78	91.425	Pan_paniscus
ENSTGUG00000001057	UPF1	100	95.723	ENSPPRG00000023470	UPF1	83	89.809	Panthera_pardus
ENSTGUG00000001057	UPF1	89	97.338	ENSPTIG00000010159	UPF1	81	88.902	Panthera_tigris_altaica
ENSTGUG00000001057	UPF1	100	95.428	ENSPTRG00000010721	UPF1	83	89.787	Pan_troglodytes
ENSTGUG00000001057	UPF1	100	95.428	ENSPANG00000008847	UPF1	83	89.787	Papio_anubis
ENSTGUG00000001057	UPF1	100	93.935	ENSPKIG00000006069	upf1	87	89.149	Paramormyrops_kingsleyae
ENSTGUG00000001057	UPF1	61	88.850	ENSPSIG00000009491	UPF1	75	88.850	Pelodiscus_sinensis
ENSTGUG00000001057	UPF1	100	90.089	ENSPMGG00000017327	upf1	82	86.277	Periophthalmus_magnuspinnatus
ENSTGUG00000001057	UPF1	100	95.273	ENSPEMG00000001085	Upf1	83	89.468	Peromyscus_maniculatus_bairdii
ENSTGUG00000001057	UPF1	100	86.982	ENSPMAG00000001206	upf1	83	83.191	Petromyzon_marinus
ENSTGUG00000001057	UPF1	100	95.575	ENSPCIG00000006156	UPF1	83	90.223	Phascolarctos_cinereus
ENSTGUG00000001057	UPF1	100	90.533	ENSPLAG00000016232	-	83	86.489	Poecilia_latipinna
ENSTGUG00000001057	UPF1	100	89.497	ENSPLAG00000018155	-	82	85.532	Poecilia_latipinna
ENSTGUG00000001057	UPF1	100	90.680	ENSPMEG00000016319	-	83	86.596	Poecilia_mexicana
ENSTGUG00000001057	UPF1	100	89.645	ENSPMEG00000011443	-	83	85.638	Poecilia_mexicana
ENSTGUG00000001057	UPF1	100	89.349	ENSPREG00000009940	upf1	82	85.851	Poecilia_reticulata
ENSTGUG00000001057	UPF1	100	90.533	ENSPREG00000011247	-	83	86.489	Poecilia_reticulata
ENSTGUG00000001057	UPF1	100	95.280	ENSPPYG00000009752	UPF1	83	84.607	Pongo_abelii
ENSTGUG00000001057	UPF1	73	100.000	ENSPCAG00000012962	UPF1	61	81.940	Procavia_capensis
ENSTGUG00000001057	UPF1	100	95.569	ENSPCOG00000023813	UPF1	83	90.319	Propithecus_coquereli
ENSTGUG00000001057	UPF1	100	95.007	ENSPVAG00000003183	UPF1	60	95.007	Pteropus_vampyrus
ENSTGUG00000001057	UPF1	100	91.124	ENSPNYG00000016731	-	82	86.809	Pundamilia_nyererei
ENSTGUG00000001057	UPF1	100	90.976	ENSPNYG00000003694	upf1	82	87.340	Pundamilia_nyererei
ENSTGUG00000001057	UPF1	100	92.308	ENSPNAG00000025614	upf1	82	88.085	Pygocentrus_nattereri
ENSTGUG00000001057	UPF1	100	95.273	ENSRNOG00000020134	Upf1	83	89.468	Rattus_norvegicus
ENSTGUG00000001057	UPF1	90	92.574	ENSRBIG00000013894	UPF1	79	88.528	Rhinopithecus_bieti
ENSTGUG00000001057	UPF1	90	96.700	ENSRROG00000040935	UPF1	80	91.425	Rhinopithecus_roxellana
ENSTGUG00000001057	UPF1	90	50.637	YMR080C	NAM7	87	50.637	Saccharomyces_cerevisiae
ENSTGUG00000001057	UPF1	88	97.324	ENSSBOG00000023632	UPF1	78	91.415	Saimiri_boliviensis_boliviensis
ENSTGUG00000001057	UPF1	89	97.663	ENSSHAG00000010499	UPF1	82	91.445	Sarcophilus_harrisii
ENSTGUG00000001057	UPF1	100	93.935	ENSSFOG00015021095	upf1	81	91.098	Scleropages_formosus
ENSTGUG00000001057	UPF1	100	91.272	ENSSMAG00000021018	-	82	86.915	Scophthalmus_maximus
ENSTGUG00000001057	UPF1	100	89.793	ENSSMAG00000005055	upf1	81	86.277	Scophthalmus_maximus
ENSTGUG00000001057	UPF1	100	91.272	ENSSDUG00000013320	upf1	81	87.447	Seriola_dumerili
ENSTGUG00000001057	UPF1	100	91.420	ENSSDUG00000009629	-	82	87.021	Seriola_dumerili
ENSTGUG00000001057	UPF1	100	91.272	ENSSLDG00000020868	upf1	82	87.447	Seriola_lalandi_dorsalis
ENSTGUG00000001057	UPF1	100	91.420	ENSSLDG00000006878	-	82	87.021	Seriola_lalandi_dorsalis
ENSTGUG00000001057	UPF1	100	95.858	ENSSPUG00000010538	UPF1	87	90.426	Sphenodon_punctatus
ENSTGUG00000001057	UPF1	100	87.130	ENSSPAG00000000003	upf1	82	84.468	Stegastes_partitus
ENSTGUG00000001057	UPF1	100	91.272	ENSSPAG00000011521	-	82	86.915	Stegastes_partitus
ENSTGUG00000001057	UPF1	100	95.428	ENSSSCG00000039301	UPF1	83	90.213	Sus_scrofa
ENSTGUG00000001057	UPF1	100	90.089	ENSTRUG00000000150	upf1	83	86.596	Takifugu_rubripes
ENSTGUG00000001057	UPF1	100	90.828	ENSTRUG00000005131	-	82	86.064	Takifugu_rubripes
ENSTGUG00000001057	UPF1	100	88.609	ENSTTRG00000011544	UPF1	83	85.532	Tursiops_truncatus
ENSTGUG00000001057	UPF1	100	95.428	ENSUAMG00000007093	UPF1	83	89.597	Ursus_americanus
ENSTGUG00000001057	UPF1	91	95.779	ENSUMAG00000006652	UPF1	81	91.329	Ursus_maritimus
ENSTGUG00000001057	UPF1	100	95.428	ENSVVUG00000007797	UPF1	83	89.597	Vulpes_vulpes
ENSTGUG00000001057	UPF1	100	93.411	ENSXETG00000013602	upf1	77	80.372	Xenopus_tropicalis
ENSTGUG00000001057	UPF1	100	89.793	ENSXCOG00000015275	-	83	85.745	Xiphophorus_couchianus
ENSTGUG00000001057	UPF1	87	94.737	ENSXCOG00000005764	-	81	88.980	Xiphophorus_couchianus
ENSTGUG00000001057	UPF1	100	89.941	ENSXMAG00000001703	-	83	85.851	Xiphophorus_maculatus
ENSTGUG00000001057	UPF1	100	90.533	ENSXMAG00000002540	-	83	86.489	Xiphophorus_maculatus