EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000001135 (Gene tree)
Gene ID: -
Gene Symbol: SRRM1
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 16982 bases
Position: chr23:3392222-3409203
Accession: 16638
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000001173	PWI	PF01480.17	4e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000001185	SRRM1-201	2724	-	ENSTGUP00000001173	907 (aa)	-	H0YSB3

Gene Model

Click here to download ENSTGUG00000001135's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03013	RNA transport	KEGG
tgu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000001135's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000001135	SRRM1	100	95.077	ENSGALG00000001283	SRRM1	99	100.000	Gallus_gallus
ENSTGUG00000001135	SRRM1	99	93.605	ENSMGAG00000002060	SRRM1	100	93.605	Meleagris_gallopavo
ENSTGUG00000001135	SRRM1	55	91.498	MGP_CAROLIEiJ_G0026636	Srrm1	100	79.736	Mus_caroli
ENSTGUG00000001135	SRRM1	55	91.903	MGP_PahariEiJ_G0028969	Srrm1	100	79.736	Mus_pahari
ENSTGUG00000001135	SRRM1	55	91.498	MGP_SPRETEiJ_G0027616	Srrm1	100	79.736	Mus_spretus
ENSTGUG00000001135	SRRM1	58	89.349	ENSPCAG00000015138	SRRM1	54	87.766	Procavia_capensis
ENSTGUG00000001135	SRRM1	63	70.166	ENSSARG00000013718	SRRM1	57	84.000	Sorex_araneus