EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000002163 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 52683 bases
Position: chr1A:5397435-5450117
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000002241	Upf2	PF04050.14	1.6e-33	1	1
ENSTGUP00000002241	MIF4G	PF02854.19	3.4e-75	1	3
ENSTGUP00000002241	MIF4G	PF02854.19	3.4e-75	2	3
ENSTGUP00000002241	MIF4G	PF02854.19	3.4e-75	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000002261	-	4208	-	ENSTGUP00000002241	1268 (aa)	-	H0YVC0

Gene Model

Click here to download ENSTGUG00000002163's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03013	RNA transport	KEGG
tgu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000002163's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000002163	-	100	93.065	ENSG00000151461	UPF2	99	91.253	Homo_sapiens
ENSTGUG00000002163	-	100	79.859	ENSAPOG00000015837	UPF2	99	79.310	Acanthochromis_polyacanthus
ENSTGUG00000002163	-	100	94.085	ENSAMEG00000004586	UPF2	99	94.085	Ailuropoda_melanoleuca
ENSTGUG00000002163	-	100	83.503	ENSACIG00000018078	UPF2	99	83.346	Amphilophus_citrinellus
ENSTGUG00000002163	-	100	83.737	ENSAOCG00000016766	UPF2	99	83.815	Amphiprion_ocellaris
ENSTGUG00000002163	-	100	83.815	ENSAPEG00000019084	UPF2	99	83.894	Amphiprion_percula
ENSTGUG00000002163	-	100	83.476	ENSATEG00000021677	UPF2	99	83.528	Anabas_testudineus
ENSTGUG00000002163	-	100	90.315	ENSAPLG00000010287	UPF2	90	94.338	Anas_platyrhynchos
ENSTGUG00000002163	-	100	94.006	ENSACAG00000009259	UPF2	99	94.006	Anolis_carolinensis
ENSTGUG00000002163	-	100	82.992	ENSANAG00000028451	UPF2	99	82.992	Aotus_nancymaae
ENSTGUG00000002163	-	100	81.406	ENSACLG00000012696	UPF2	99	83.047	Astatotilapia_calliptera
ENSTGUG00000002163	-	100	83.112	ENSAMXG00000013700	UPF2	99	83.320	Astyanax_mexicanus
ENSTGUG00000002163	-	100	94.006	ENSBTAG00000000288	UPF2	99	100.000	Bos_taurus
ENSTGUG00000002163	-	100	92.508	ENSCJAG00000020685	UPF2	99	92.508	Callithrix_jacchus
ENSTGUG00000002163	-	100	94.085	ENSCAFG00000004839	UPF2	99	94.085	Canis_familiaris
ENSTGUG00000002163	-	97	98.020	ENSCAFG00020005882	UPF2	99	97.938	Canis_lupus_dingo
ENSTGUG00000002163	-	100	94.006	ENSCHIG00000020359	UPF2	99	94.006	Capra_hircus
ENSTGUG00000002163	-	100	93.533	ENSTSYG00000000935	UPF2	97	97.714	Carlito_syrichta
ENSTGUG00000002163	-	92	83.549	ENSCAPG00000016658	UPF2	94	83.333	Cavia_aperea
ENSTGUG00000002163	-	99	91.270	ENSCPOG00000008809	UPF2	99	90.794	Cavia_porcellus
ENSTGUG00000002163	-	100	85.647	ENSCCAG00000035991	UPF2	99	87.066	Cebus_capucinus
ENSTGUG00000002163	-	100	93.144	ENSCATG00000032679	UPF2	99	91.332	Cercocebus_atys
ENSTGUG00000002163	-	100	92.981	ENSCLAG00000011434	UPF2	99	92.508	Chinchilla_lanigera
ENSTGUG00000002163	-	100	93.144	ENSCSAG00000013372	UPF2	99	91.332	Chlorocebus_sabaeus
ENSTGUG00000002163	-	87	96.429	ENSCHOG00000000422	UPF2	89	96.429	Choloepus_hoffmanni
ENSTGUG00000002163	-	100	94.716	ENSCPBG00000027823	UPF2	92	96.788	Chrysemys_picta_bellii
ENSTGUG00000002163	-	79	49.407	ENSCSAVG00000007772	-	99	49.010	Ciona_savignyi
ENSTGUG00000002163	-	100	87.256	ENSCANG00000040396	UPF2	99	85.984	Colobus_angolensis_palliatus
ENSTGUG00000002163	-	100	93.454	ENSCGRG00001019347	Upf2	99	93.533	Cricetulus_griseus_chok1gshd
ENSTGUG00000002163	-	100	93.454	ENSCGRG00000017993	Upf2	99	93.533	Cricetulus_griseus_crigri
ENSTGUG00000002163	-	91	82.149	ENSCSEG00000003520	UPF2	90	81.196	Cynoglossus_semilaevis
ENSTGUG00000002163	-	99	83.622	ENSCVAG00000006167	UPF2	99	83.386	Cyprinodon_variegatus
ENSTGUG00000002163	-	100	93.770	ENSDNOG00000018160	UPF2	99	93.770	Dasypus_novemcinctus
ENSTGUG00000002163	-	100	92.744	ENSDORG00000002478	Upf2	99	92.823	Dipodomys_ordii
ENSTGUG00000002163	-	73	98.529	ENSETEG00000011583	-	66	98.529	Echinops_telfairi
ENSTGUG00000002163	-	69	69.792	ENSEBUG00000012448	-	87	72.973	Eptatretus_burgeri
ENSTGUG00000002163	-	100	91.956	ENSEASG00005019274	UPF2	99	95.016	Equus_asinus_asinus
ENSTGUG00000002163	-	100	93.612	ENSECAG00000017022	UPF2	99	93.139	Equus_caballus
ENSTGUG00000002163	-	82	90.968	ENSEEUG00000007819	UPF2	81	90.968	Erinaceus_europaeus
ENSTGUG00000002163	-	100	82.381	ENSELUG00000012014	UPF2	99	82.944	Esox_lucius
ENSTGUG00000002163	-	100	97.191	ENSFCAG00000005785	UPF2	99	94.243	Felis_catus
ENSTGUG00000002163	-	100	99.290	ENSFALG00000001889	UPF2	98	99.290	Ficedula_albicollis
ENSTGUG00000002163	-	100	92.508	ENSFDAG00000014348	UPF2	99	92.114	Fukomys_damarensis
ENSTGUG00000002163	-	99	83.835	ENSFHEG00000009826	UPF2	99	83.651	Fundulus_heteroclitus
ENSTGUG00000002163	-	91	83.492	ENSGMOG00000005557	UPF2	90	84.229	Gadus_morhua
ENSTGUG00000002163	-	100	97.400	ENSGALG00000033772	UPF2	99	97.400	Gallus_gallus
ENSTGUG00000002163	-	100	83.190	ENSGAFG00000020867	UPF2	99	83.034	Gambusia_affinis
ENSTGUG00000002163	-	91	84.801	ENSGACG00000001080	UPF2	99	82.799	Gasterosteus_aculeatus
ENSTGUG00000002163	-	100	95.189	ENSGAGG00000002700	UPF2	99	95.189	Gopherus_agassizii
ENSTGUG00000002163	-	100	93.065	ENSGGOG00000001479	UPF2	99	91.253	Gorilla_gorilla
ENSTGUG00000002163	-	100	81.406	ENSHBUG00000004249	UPF2	99	83.047	Haplochromis_burtoni
ENSTGUG00000002163	-	100	92.744	ENSHGLG00000015176	-	99	92.271	Heterocephalus_glaber_female
ENSTGUG00000002163	-	100	81.861	ENSHGLG00000003822	-	99	80.915	Heterocephalus_glaber_female
ENSTGUG00000002163	-	88	94.514	ENSHGLG00100010036	UPF2	89	94.604	Heterocephalus_glaber_male
ENSTGUG00000002163	-	100	80.763	ENSHCOG00000004025	UPF2	90	84.469	Hippocampus_comes
ENSTGUG00000002163	-	100	82.408	ENSIPUG00000015524	UPF2	99	82.473	Ictalurus_punctatus
ENSTGUG00000002163	-	100	93.454	ENSSTOG00000013075	UPF2	99	93.533	Ictidomys_tridecemlineatus
ENSTGUG00000002163	-	100	91.404	ENSJJAG00000004913	Upf2	99	91.404	Jaculus_jaculus
ENSTGUG00000002163	-	91	85.909	ENSKMAG00000001071	UPF2	91	85.960	Kryptolebias_marmoratus
ENSTGUG00000002163	-	80	82.498	ENSLBEG00000000728	-	93	82.596	Labrus_bergylta
ENSTGUG00000002163	-	100	83.242	ENSLBEG00000016394	-	99	83.294	Labrus_bergylta
ENSTGUG00000002163	-	99	80.471	ENSLACG00000015945	UPF2	99	80.863	Latimeria_chalumnae
ENSTGUG00000002163	-	99	87.757	ENSLOCG00000015698	UPF2	99	87.678	Lepisosteus_oculatus
ENSTGUG00000002163	-	100	93.144	ENSMFAG00000043865	UPF2	99	91.332	Macaca_fascicularis
ENSTGUG00000002163	-	100	93.144	ENSMMUG00000008241	UPF2	99	91.332	Macaca_mulatta
ENSTGUG00000002163	-	81	92.195	ENSMNEG00000008062	UPF2	99	90.206	Macaca_nemestrina
ENSTGUG00000002163	-	95	96.117	ENSMLEG00000036120	UPF2	99	96.350	Mandrillus_leucophaeus
ENSTGUG00000002163	-	100	83.398	ENSMAMG00000018276	UPF2	99	83.450	Mastacembelus_armatus
ENSTGUG00000002163	-	100	81.406	ENSMZEG00005021595	UPF2	99	83.047	Maylandia_zebra
ENSTGUG00000002163	-	100	96.296	ENSMGAG00000004573	UPF2	99	96.296	Meleagris_gallopavo
ENSTGUG00000002163	-	100	91.167	ENSMAUG00000016512	Upf2	99	91.246	Mesocricetus_auratus
ENSTGUG00000002163	-	100	89.196	ENSMICG00000001716	UPF2	99	88.959	Microcebus_murinus
ENSTGUG00000002163	-	100	92.981	ENSMOCG00000008263	Upf2	99	92.666	Microtus_ochrogaster
ENSTGUG00000002163	-	90	84.000	ENSMMOG00000006528	UPF2	90	83.247	Mola_mola
ENSTGUG00000002163	-	100	94.085	ENSMODG00000016794	UPF2	99	94.085	Monodelphis_domestica
ENSTGUG00000002163	-	100	83.412	ENSMALG00000002663	UPF2	99	83.386	Monopterus_albus
ENSTGUG00000002163	-	100	92.744	MGP_CAROLIEiJ_G0023157	Upf2	99	94.828	Mus_caroli
ENSTGUG00000002163	-	100	93.297	ENSMUSG00000043241	Upf2	99	96.360	Mus_musculus
ENSTGUG00000002163	-	100	92.981	MGP_PahariEiJ_G0019217	Upf2	99	96.169	Mus_pahari
ENSTGUG00000002163	-	100	93.533	MGP_SPRETEiJ_G0024075	Upf2	99	96.360	Mus_spretus
ENSTGUG00000002163	-	100	94.006	ENSMPUG00000001064	UPF2	99	94.006	Mustela_putorius_furo
ENSTGUG00000002163	-	100	93.239	ENSMLUG00000000228	UPF2	99	93.160	Myotis_lucifugus
ENSTGUG00000002163	-	100	81.406	ENSNBRG00000013629	UPF2	99	83.047	Neolamprologus_brichardi
ENSTGUG00000002163	-	100	93.065	ENSNLEG00000012058	UPF2	99	91.253	Nomascus_leucogenys
ENSTGUG00000002163	-	57	100.000	ENSMEUG00000002180	-	55	100.000	Notamacropus_eugenii
ENSTGUG00000002163	-	82	98.592	ENSOPRG00000006801	-	78	98.592	Ochotona_princeps
ENSTGUG00000002163	-	100	92.902	ENSODEG00000001290	UPF2	99	92.429	Octodon_degus
ENSTGUG00000002163	-	100	81.406	ENSONIG00000017991	UPF2	99	83.047	Oreochromis_niloticus
ENSTGUG00000002163	-	100	92.627	ENSOCUG00000006230	UPF2	99	92.666	Oryctolagus_cuniculus
ENSTGUG00000002163	-	100	82.826	ENSORLG00000017189	UPF2	99	83.020	Oryzias_latipes
ENSTGUG00000002163	-	100	82.826	ENSORLG00020005969	UPF2	99	83.099	Oryzias_latipes_hni
ENSTGUG00000002163	-	100	82.826	ENSORLG00015005713	UPF2	99	83.099	Oryzias_latipes_hsok
ENSTGUG00000002163	-	100	80.156	ENSOMEG00000023420	UPF2	98	80.345	Oryzias_melastigma
ENSTGUG00000002163	-	100	93.218	ENSOGAG00000005796	UPF2	99	93.218	Otolemur_garnettii
ENSTGUG00000002163	-	100	93.858	ENSOARG00000014587	UPF2	99	93.858	Ovis_aries
ENSTGUG00000002163	-	100	89.515	ENSPPAG00000037953	UPF2	99	88.337	Pan_paniscus
ENSTGUG00000002163	-	100	94.243	ENSPPRG00000000690	UPF2	99	94.243	Panthera_pardus
ENSTGUG00000002163	-	100	94.243	ENSPTIG00000008867	UPF2	99	94.243	Panthera_tigris_altaica
ENSTGUG00000002163	-	100	93.065	ENSPTRG00000002291	UPF2	99	91.253	Pan_troglodytes
ENSTGUG00000002163	-	100	93.144	ENSPANG00000023399	UPF2	99	91.332	Papio_anubis
ENSTGUG00000002163	-	100	83.268	ENSPKIG00000025502	UPF2	99	82.408	Paramormyrops_kingsleyae
ENSTGUG00000002163	-	59	94.422	ENSPSIG00000015158	UPF2	95	94.422	Pelodiscus_sinensis
ENSTGUG00000002163	-	100	80.848	ENSPMGG00000005259	UPF2	99	81.053	Periophthalmus_magnuspinnatus
ENSTGUG00000002163	-	93	89.213	ENSPEMG00000015731	Upf2	99	89.213	Peromyscus_maniculatus_bairdii
ENSTGUG00000002163	-	100	93.927	ENSPCIG00000006656	UPF2	99	93.927	Phascolarctos_cinereus
ENSTGUG00000002163	-	100	83.268	ENSPFOG00000017118	UPF2	99	83.268	Poecilia_formosa
ENSTGUG00000002163	-	100	83.268	ENSPLAG00000005094	UPF2	99	83.268	Poecilia_latipinna
ENSTGUG00000002163	-	100	83.268	ENSPMEG00000017009	UPF2	99	83.268	Poecilia_mexicana
ENSTGUG00000002163	-	100	83.072	ENSPREG00000021880	UPF2	99	83.307	Poecilia_reticulata
ENSTGUG00000002163	-	66	94.958	ENSPPYG00000002089	-	99	94.958	Pongo_abelii
ENSTGUG00000002163	-	100	80.363	ENSPCAG00000000684	UPF2	90	85.083	Procavia_capensis
ENSTGUG00000002163	-	100	90.379	ENSPCOG00000021656	UPF2	99	90.773	Propithecus_coquereli
ENSTGUG00000002163	-	100	86.998	ENSPVAG00000017286	UPF2	99	86.998	Pteropus_vampyrus
ENSTGUG00000002163	-	100	78.906	ENSPNYG00000017096	UPF2	99	81.016	Pundamilia_nyererei
ENSTGUG00000002163	-	100	83.659	ENSPNAG00000009357	UPF2	99	83.972	Pygocentrus_nattereri
ENSTGUG00000002163	-	100	87.903	ENSRNOG00000023593	Upf2	97	100.000	Rattus_norvegicus
ENSTGUG00000002163	-	100	91.562	ENSRBIG00000037780	UPF2	99	91.719	Rhinopithecus_bieti
ENSTGUG00000002163	-	100	92.671	ENSRROG00000043547	UPF2	99	91.017	Rhinopithecus_roxellana
ENSTGUG00000002163	-	100	92.035	ENSSBOG00000020012	UPF2	99	92.114	Saimiri_boliviensis_boliviensis
ENSTGUG00000002163	-	100	82.891	ENSSFOG00015023788	upf2	99	83.906	Scleropages_formosus
ENSTGUG00000002163	-	90	83.969	ENSSMAG00000007637	UPF2	90	84.682	Scophthalmus_maximus
ENSTGUG00000002163	-	100	83.581	ENSSDUG00000017244	UPF2	99	83.737	Seriola_dumerili
ENSTGUG00000002163	-	100	82.132	ENSSLDG00000016866	UPF2	99	81.818	Seriola_lalandi_dorsalis
ENSTGUG00000002163	-	100	91.719	ENSSARG00000008615	UPF2	99	91.719	Sorex_araneus
ENSTGUG00000002163	-	100	91.877	ENSSPUG00000014544	UPF2	98	91.877	Sphenodon_punctatus
ENSTGUG00000002163	-	68	95.150	ENSSSCG00000011117	-	99	95.150	Sus_scrofa
ENSTGUG00000002163	-	100	82.592	ENSTRUG00000007519	UPF2	99	82.721	Takifugu_rubripes
ENSTGUG00000002163	-	93	85.605	ENSTBEG00000012679	UPF2	93	85.690	Tupaia_belangeri
ENSTGUG00000002163	-	100	93.612	ENSTTRG00000016388	UPF2	99	93.218	Tursiops_truncatus
ENSTGUG00000002163	-	92	97.902	ENSUAMG00000023560	UPF2	98	100.000	Ursus_americanus
ENSTGUG00000002163	-	100	94.006	ENSUMAG00000012953	UPF2	95	94.006	Ursus_maritimus
ENSTGUG00000002163	-	85	96.774	ENSVPAG00000006763	UPF2	86	96.774	Vicugna_pacos
ENSTGUG00000002163	-	100	94.085	ENSVVUG00000006166	UPF2	99	94.085	Vulpes_vulpes
ENSTGUG00000002163	-	100	84.664	ENSXETG00000033103	UPF2	91	89.245	Xenopus_tropicalis
ENSTGUG00000002163	-	92	85.714	ENSXCOG00000011604	UPF2	99	82.955	Xiphophorus_couchianus
ENSTGUG00000002163	-	92	85.885	ENSXMAG00000017209	UPF2	99	82.955	Xiphophorus_maculatus