EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000002623 (Gene tree)
Gene ID: 100219639
Gene Symbol: PRPF4
Alias: HPRP4|HPRP4P|PRP4|Prp4p|SNRNP60
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 13594 bases
Position: chr17:1302988-1316581
Accession: 100219639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000002709	PRP4	PF08799.11	2.8e-14	1	1
ENSTGUP00000002707	PRP4	PF08799.11	3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000002737	PRPF4-202	1558	-	ENSTGUP00000002709	489 (aa)	-	H0YWN5
ENSTGUT00000002735	PRPF4-201	1648	XM_002191366	ENSTGUP00000002707	519 (aa)	XP_002191402	H0YWN3

Gene Model

Click here to download ENSTGUG00000002623's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000002623's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000002623	PRPF4	66	31.897	ENSTGUG00000006592	-	77	31.897
ENSTGUG00000002623	PRPF4	60	31.847	ENSTGUG00000008761	APAF1	50	31.847
ENSTGUG00000002623	PRPF4	58	32.298	ENSTGUG00000006036	POC1A	72	32.298

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000002623	PRPF4	100	90.593	ENSG00000136875	PRPF4	95	90.264	Homo_sapiens
ENSTGUG00000002623	PRPF4	100	79.140	ENSAPOG00000014132	prpf4	96	78.891	Acanthochromis_polyacanthus
ENSTGUG00000002623	PRPF4	100	90.798	ENSAMEG00000013048	PRPF4	92	90.798	Ailuropoda_melanoleuca
ENSTGUG00000002623	PRPF4	100	78.819	ENSACIG00000005579	prpf4	97	78.586	Amphilophus_citrinellus
ENSTGUG00000002623	PRPF4	100	77.642	ENSAOCG00000005457	prpf4	97	77.419	Amphiprion_ocellaris
ENSTGUG00000002623	PRPF4	100	77.439	ENSAPEG00000000776	prpf4	97	77.218	Amphiprion_percula
ENSTGUG00000002623	PRPF4	100	77.597	ENSATEG00000023013	prpf4	97	77.374	Anabas_testudineus
ENSTGUG00000002623	PRPF4	100	97.342	ENSAPLG00000006534	PRPF4	95	95.098	Anas_platyrhynchos
ENSTGUG00000002623	PRPF4	100	91.853	ENSACAG00000015110	PRPF4	98	89.844	Anolis_carolinensis
ENSTGUG00000002623	PRPF4	100	90.798	ENSANAG00000022464	PRPF4	91	90.467	Aotus_nancymaae
ENSTGUG00000002623	PRPF4	100	77.800	ENSACLG00000019031	prpf4	97	77.576	Astatotilapia_calliptera
ENSTGUG00000002623	PRPF4	100	61.584	ENSAMXG00000006756	prpf4	97	72.414	Astyanax_mexicanus
ENSTGUG00000002623	PRPF4	100	90.798	ENSBTAG00000004571	PRPF4	95	90.467	Bos_taurus
ENSTGUG00000002623	PRPF4	93	44.956	WBGene00007972	prp-4	91	44.956	Caenorhabditis_elegans
ENSTGUG00000002623	PRPF4	100	90.798	ENSCJAG00000017856	PRPF4	94	90.798	Callithrix_jacchus
ENSTGUG00000002623	PRPF4	100	90.798	ENSCAFG00000003224	PRPF4	92	90.467	Canis_familiaris
ENSTGUG00000002623	PRPF4	100	90.798	ENSCAFG00020022637	PRPF4	95	90.467	Canis_lupus_dingo
ENSTGUG00000002623	PRPF4	100	90.798	ENSCHIG00000024648	-	94	90.798	Capra_hircus
ENSTGUG00000002623	PRPF4	100	90.593	ENSTSYG00000010366	PRPF4	95	90.264	Carlito_syrichta
ENSTGUG00000002623	PRPF4	94	81.384	ENSCAPG00000008935	PRPF4	97	81.384	Cavia_aperea
ENSTGUG00000002623	PRPF4	100	90.389	ENSCPOG00000010747	-	95	90.061	Cavia_porcellus
ENSTGUG00000002623	PRPF4	100	84.867	ENSCPOG00000014729	-	95	84.584	Cavia_porcellus
ENSTGUG00000002623	PRPF4	100	91.002	ENSCCAG00000028990	PRPF4	95	90.669	Cebus_capucinus
ENSTGUG00000002623	PRPF4	100	90.798	ENSCATG00000021552	PRPF4	95	90.467	Cercocebus_atys
ENSTGUG00000002623	PRPF4	100	90.593	ENSCLAG00000013448	PRPF4	95	90.264	Chinchilla_lanigera
ENSTGUG00000002623	PRPF4	92	89.602	ENSCHOG00000007233	PRPF4	100	89.602	Choloepus_hoffmanni
ENSTGUG00000002623	PRPF4	100	92.638	ENSCPBG00000019136	PRPF4	75	88.506	Chrysemys_picta_bellii
ENSTGUG00000002623	PRPF4	96	60.504	ENSCING00000001299	-	93	60.504	Ciona_intestinalis
ENSTGUG00000002623	PRPF4	96	60.888	ENSCSAVG00000009178	-	99	59.957	Ciona_savignyi
ENSTGUG00000002623	PRPF4	100	90.798	ENSCANG00000003246	PRPF4	95	90.467	Colobus_angolensis_palliatus
ENSTGUG00000002623	PRPF4	100	90.389	ENSCGRG00001016992	Prpf4	95	90.061	Cricetulus_griseus_chok1gshd
ENSTGUG00000002623	PRPF4	100	90.389	ENSCGRG00000017560	Prpf4	95	90.061	Cricetulus_griseus_crigri
ENSTGUG00000002623	PRPF4	100	77.301	ENSCSEG00000020451	prpf4	97	77.079	Cynoglossus_semilaevis
ENSTGUG00000002623	PRPF4	100	80.164	ENSDARG00000067639	prpf4	97	80.122	Danio_rerio
ENSTGUG00000002623	PRPF4	100	90.593	ENSDNOG00000013203	PRPF4	94	90.593	Dasypus_novemcinctus
ENSTGUG00000002623	PRPF4	100	91.207	ENSDORG00000026275	Prpf4	95	90.872	Dipodomys_ordii
ENSTGUG00000002623	PRPF4	96	56.211	FBgn0036733	U4-U6-60K	86	56.211	Drosophila_melanogaster
ENSTGUG00000002623	PRPF4	100	89.980	ENSETEG00000020389	PRPF4	94	89.655	Echinops_telfairi
ENSTGUG00000002623	PRPF4	100	73.239	ENSEBUG00000015229	prpf4	87	73.121	Eptatretus_burgeri
ENSTGUG00000002623	PRPF4	100	90.798	ENSEASG00005022678	PRPF4	95	90.467	Equus_asinus_asinus
ENSTGUG00000002623	PRPF4	100	90.798	ENSECAG00000007072	PRPF4	95	90.467	Equus_caballus
ENSTGUG00000002623	PRPF4	85	92.050	ENSEEUG00000007480	PRPF4	94	70.862	Erinaceus_europaeus
ENSTGUG00000002623	PRPF4	100	80.368	ENSELUG00000007510	prpf4	97	80.325	Esox_lucius
ENSTGUG00000002623	PRPF4	100	90.798	ENSFCAG00000005514	PRPF4	94	90.798	Felis_catus
ENSTGUG00000002623	PRPF4	100	98.588	ENSFALG00000005423	PRPF4	87	96.205	Ficedula_albicollis
ENSTGUG00000002623	PRPF4	100	90.798	ENSFDAG00000005839	PRPF4	95	90.467	Fukomys_damarensis
ENSTGUG00000002623	PRPF4	100	78.004	ENSFHEG00000001300	prpf4	97	77.778	Fundulus_heteroclitus
ENSTGUG00000002623	PRPF4	100	97.546	ENSGALG00000008857	PRPF4	96	95.155	Gallus_gallus
ENSTGUG00000002623	PRPF4	63	74.194	ENSGAFG00000012164	prpf4	64	74.194	Gambusia_affinis
ENSTGUG00000002623	PRPF4	100	70.325	ENSGACG00000015476	prpf4	99	69.048	Gasterosteus_aculeatus
ENSTGUG00000002623	PRPF4	100	92.638	ENSGAGG00000025029	PRPF4	97	88.506	Gopherus_agassizii
ENSTGUG00000002623	PRPF4	100	90.593	ENSGGOG00000006943	PRPF4	95	90.264	Gorilla_gorilla
ENSTGUG00000002623	PRPF4	100	77.802	ENSHBUG00000000562	prpf4	97	77.576	Haplochromis_burtoni
ENSTGUG00000002623	PRPF4	99	76.797	ENSHGLG00000016628	-	95	77.618	Heterocephalus_glaber_female
ENSTGUG00000002623	PRPF4	100	90.593	ENSHGLG00000015191	PRPF4	95	90.264	Heterocephalus_glaber_female
ENSTGUG00000002623	PRPF4	100	72.393	ENSHGLG00000003838	-	96	71.400	Heterocephalus_glaber_female
ENSTGUG00000002623	PRPF4	100	72.393	ENSHGLG00100005571	-	96	71.400	Heterocephalus_glaber_male
ENSTGUG00000002623	PRPF4	100	79.141	ENSIPUG00000017956	PRPF4	98	78.990	Ictalurus_punctatus
ENSTGUG00000002623	PRPF4	100	90.389	ENSSTOG00000027833	PRPF4	99	86.564	Ictidomys_tridecemlineatus
ENSTGUG00000002623	PRPF4	100	90.593	ENSJJAG00000008838	Prpf4	95	90.264	Jaculus_jaculus
ENSTGUG00000002623	PRPF4	100	77.597	ENSKMAG00000013236	prpf4	97	77.374	Kryptolebias_marmoratus
ENSTGUG00000002623	PRPF4	100	77.505	ENSLBEG00000020611	prpf4	97	77.282	Labrus_bergylta
ENSTGUG00000002623	PRPF4	100	79.837	ENSLACG00000016317	PRPF4	95	79.477	Latimeria_chalumnae
ENSTGUG00000002623	PRPF4	96	82.803	ENSLOCG00000000581	prpf4	97	81.744	Lepisosteus_oculatus
ENSTGUG00000002623	PRPF4	100	90.798	ENSLAFG00000018225	PRPF4	94	90.798	Loxodonta_africana
ENSTGUG00000002623	PRPF4	100	90.593	ENSMFAG00000039397	PRPF4	95	90.264	Macaca_fascicularis
ENSTGUG00000002623	PRPF4	100	90.798	ENSMMUG00000005844	PRPF4	95	90.467	Macaca_mulatta
ENSTGUG00000002623	PRPF4	100	80.573	ENSMNEG00000033737	PRPF4	94	80.325	Macaca_nemestrina
ENSTGUG00000002623	PRPF4	100	90.798	ENSMLEG00000040284	PRPF4	95	90.467	Mandrillus_leucophaeus
ENSTGUG00000002623	PRPF4	100	77.597	ENSMAMG00000020141	prpf4	97	77.172	Mastacembelus_armatus
ENSTGUG00000002623	PRPF4	100	77.800	ENSMZEG00005023205	prpf4	97	77.576	Maylandia_zebra
ENSTGUG00000002623	PRPF4	99	97.541	ENSMGAG00000001796	PRPF4	96	95.127	Meleagris_gallopavo
ENSTGUG00000002623	PRPF4	100	90.389	ENSMAUG00000018022	Prpf4	95	90.061	Mesocricetus_auratus
ENSTGUG00000002623	PRPF4	100	90.798	ENSMICG00000015022	PRPF4	94	90.798	Microcebus_murinus
ENSTGUG00000002623	PRPF4	100	89.980	ENSMOCG00000018273	Prpf4	95	89.655	Microtus_ochrogaster
ENSTGUG00000002623	PRPF4	100	75.869	ENSMMOG00000021177	prpf4	97	75.862	Mola_mola
ENSTGUG00000002623	PRPF4	100	90.389	ENSMODG00000025096	-	91	90.389	Monodelphis_domestica
ENSTGUG00000002623	PRPF4	100	90.184	ENSMODG00000004444	-	94	89.858	Monodelphis_domestica
ENSTGUG00000002623	PRPF4	100	78.004	ENSMALG00000013624	prpf4	97	77.980	Monopterus_albus
ENSTGUG00000002623	PRPF4	100	90.389	MGP_CAROLIEiJ_G0026078	Prpf4	95	90.061	Mus_caroli
ENSTGUG00000002623	PRPF4	100	90.389	ENSMUSG00000066148	Prpf4	95	90.061	Mus_musculus
ENSTGUG00000002623	PRPF4	100	90.389	MGP_PahariEiJ_G0028413	Prpf4	95	90.061	Mus_pahari
ENSTGUG00000002623	PRPF4	100	90.389	MGP_SPRETEiJ_G0027042	Prpf4	95	90.061	Mus_spretus
ENSTGUG00000002623	PRPF4	100	90.798	ENSMPUG00000007883	PRPF4	95	90.467	Mustela_putorius_furo
ENSTGUG00000002623	PRPF4	100	89.162	ENSMLUG00000008626	-	92	88.844	Myotis_lucifugus
ENSTGUG00000002623	PRPF4	100	90.798	ENSMLUG00000015309	-	92	90.467	Myotis_lucifugus
ENSTGUG00000002623	PRPF4	100	85.072	ENSNGAG00000000468	Prpf4	94	84.787	Nannospalax_galili
ENSTGUG00000002623	PRPF4	100	78.004	ENSNBRG00000007972	prpf4	97	77.778	Neolamprologus_brichardi
ENSTGUG00000002623	PRPF4	100	90.798	ENSNLEG00000016647	PRPF4	95	90.467	Nomascus_leucogenys
ENSTGUG00000002623	PRPF4	100	90.389	ENSMEUG00000013256	PRPF4	96	90.061	Notamacropus_eugenii
ENSTGUG00000002623	PRPF4	100	91.002	ENSOPRG00000005302	PRPF4	94	91.002	Ochotona_princeps
ENSTGUG00000002623	PRPF4	100	90.798	ENSODEG00000018147	PRPF4	95	90.467	Octodon_degus
ENSTGUG00000002623	PRPF4	100	78.004	ENSONIG00000012671	prpf4	97	77.778	Oreochromis_niloticus
ENSTGUG00000002623	PRPF4	100	91.002	ENSOCUG00000005046	PRPF4	95	90.669	Oryctolagus_cuniculus
ENSTGUG00000002623	PRPF4	100	76.687	ENSORLG00000019641	prpf4	98	75.904	Oryzias_latipes
ENSTGUG00000002623	PRPF4	100	76.687	ENSORLG00020019438	prpf4	98	75.904	Oryzias_latipes_hni
ENSTGUG00000002623	PRPF4	100	76.407	ENSOMEG00000020941	prpf4	97	76.180	Oryzias_melastigma
ENSTGUG00000002623	PRPF4	100	86.912	ENSOGAG00000007802	PRPF4	92	86.912	Otolemur_garnettii
ENSTGUG00000002623	PRPF4	100	90.798	ENSOARG00000006319	PRPF4	91	90.798	Ovis_aries
ENSTGUG00000002623	PRPF4	100	90.593	ENSPPAG00000041797	PRPF4	95	90.264	Pan_paniscus
ENSTGUG00000002623	PRPF4	100	90.798	ENSPPRG00000014360	PRPF4	95	90.467	Panthera_pardus
ENSTGUG00000002623	PRPF4	100	90.798	ENSPTIG00000009574	PRPF4	95	90.467	Panthera_tigris_altaica
ENSTGUG00000002623	PRPF4	100	90.593	ENSPTRG00000021274	PRPF4	94	90.593	Pan_troglodytes
ENSTGUG00000002623	PRPF4	100	90.593	ENSPANG00000025776	PRPF4	91	90.264	Papio_anubis
ENSTGUG00000002623	PRPF4	100	82.618	ENSPKIG00000017259	prpf4	98	82.129	Paramormyrops_kingsleyae
ENSTGUG00000002623	PRPF4	100	92.434	ENSPSIG00000010713	PRPF4	87	92.292	Pelodiscus_sinensis
ENSTGUG00000002623	PRPF4	100	59.013	ENSPMGG00000000997	prpf4	95	58.757	Periophthalmus_magnuspinnatus
ENSTGUG00000002623	PRPF4	100	90.389	ENSPEMG00000024115	Prpf4	95	90.061	Peromyscus_maniculatus_bairdii
ENSTGUG00000002623	PRPF4	100	90.389	ENSPCIG00000003821	PRPF4	96	90.061	Phascolarctos_cinereus
ENSTGUG00000002623	PRPF4	100	70.909	ENSPFOG00000013524	prpf4	95	73.567	Poecilia_formosa
ENSTGUG00000002623	PRPF4	84	72.581	ENSPLAG00000011620	prpf4	94	72.293	Poecilia_latipinna
ENSTGUG00000002623	PRPF4	98	74.688	ENSPMEG00000006813	prpf4	96	74.383	Poecilia_mexicana
ENSTGUG00000002623	PRPF4	100	90.389	ENSPCAG00000002561	PRPF4	96	90.061	Procavia_capensis
ENSTGUG00000002623	PRPF4	100	90.798	ENSPCOG00000011975	PRPF4	95	90.467	Propithecus_coquereli
ENSTGUG00000002623	PRPF4	100	87.321	ENSPVAG00000004708	PRPF4	94	87.321	Pteropus_vampyrus
ENSTGUG00000002623	PRPF4	100	77.800	ENSPNYG00000008013	prpf4	97	77.576	Pundamilia_nyererei
ENSTGUG00000002623	PRPF4	100	80.164	ENSPNAG00000000697	prpf4	97	80.122	Pygocentrus_nattereri
ENSTGUG00000002623	PRPF4	100	90.184	ENSRNOG00000014777	Prpf4	95	89.858	Rattus_norvegicus
ENSTGUG00000002623	PRPF4	100	90.798	ENSRBIG00000040221	PRPF4	95	90.467	Rhinopithecus_bieti
ENSTGUG00000002623	PRPF4	100	90.798	ENSRROG00000040240	PRPF4	95	90.467	Rhinopithecus_roxellana
ENSTGUG00000002623	PRPF4	100	90.593	ENSSHAG00000017658	PRPF4	94	90.264	Sarcophilus_harrisii
ENSTGUG00000002623	PRPF4	100	83.231	ENSSFOG00015008963	prpf4	97	83.164	Scleropages_formosus
ENSTGUG00000002623	PRPF4	100	77.393	ENSSMAG00000008889	prpf4	97	77.172	Scophthalmus_maximus
ENSTGUG00000002623	PRPF4	100	77.586	ENSSDUG00000022083	prpf4	96	74.645	Seriola_dumerili
ENSTGUG00000002623	PRPF4	100	77.586	ENSSLDG00000008115	prpf4	96	74.645	Seriola_lalandi_dorsalis
ENSTGUG00000002623	PRPF4	100	92.638	ENSSPUG00000015582	PRPF4	96	91.583	Sphenodon_punctatus
ENSTGUG00000002623	PRPF4	100	72.727	ENSSPAG00000011286	prpf4	97	72.545	Stegastes_partitus
ENSTGUG00000002623	PRPF4	100	90.798	ENSSSCG00000024648	PRPF4	95	90.467	Sus_scrofa
ENSTGUG00000002623	PRPF4	100	75.918	ENSTRUG00000008853	prpf4	97	75.709	Takifugu_rubripes
ENSTGUG00000002623	PRPF4	100	76.892	ENSTNIG00000013250	prpf4	97	76.673	Tetraodon_nigroviridis
ENSTGUG00000002623	PRPF4	100	82.413	ENSTBEG00000000821	PRPF4	94	82.413	Tupaia_belangeri
ENSTGUG00000002623	PRPF4	87	91.860	ENSTTRG00000003246	PRPF4	85	91.860	Tursiops_truncatus
ENSTGUG00000002623	PRPF4	63	85.668	ENSUAMG00000018288	PRPF4	88	85.668	Ursus_americanus
ENSTGUG00000002623	PRPF4	100	90.184	ENSUMAG00000019375	PRPF4	95	89.858	Ursus_maritimus
ENSTGUG00000002623	PRPF4	100	91.207	ENSVPAG00000005281	PRPF4	94	91.207	Vicugna_pacos
ENSTGUG00000002623	PRPF4	100	89.655	ENSVVUG00000002476	PRPF4	99	88.492	Vulpes_vulpes
ENSTGUG00000002623	PRPF4	73	58.287	ENSXCOG00000006101	prpf4	93	60.197	Xiphophorus_couchianus
ENSTGUG00000002623	PRPF4	91	65.247	ENSXMAG00000002750	prpf4	97	66.263	Xiphophorus_maculatus