EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000003455 (Gene tree)
Gene ID: 100228119
Gene Symbol: SRSF6
Alias: B52|SFRS6|SRP55
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Plus strand
Length: 3400 bases
Position: chr20:1275381-1278780
Accession: 100228119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000003570	RRM_1	PF00076.22	5.5e-32	1	2
ENSTGUP00000003570	RRM_1	PF00076.22	5.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000003607	SRSF6-201	1047	-	ENSTGUP00000003570	348 (aa)	XP_002195735	H0YZ37

Gene Model

Click here to download ENSTGUG00000003455's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03040	Spliceosome	KEGG
tgu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000003455's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000003455	SRSF6	52	63.388	ENSTGUG00000011492	-	67	62.222
ENSTGUG00000003455	SRSF6	67	55.128	ENSTGUG00000011425	SRSF5	65	64.246

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000003455	SRSF6	94	85.061	ENSG00000124193	SRSF6	92	84.520	Homo_sapiens
ENSTGUG00000003455	SRSF6	54	74.603	ENSAMEG00000003710	SRSF6	93	74.462	Ailuropoda_melanoleuca
ENSTGUG00000003455	SRSF6	97	66.667	ENSACIG00000023658	-	56	86.740	Amphilophus_citrinellus
ENSTGUG00000003455	SRSF6	94	64.438	ENSACIG00000020091	-	95	78.125	Amphilophus_citrinellus
ENSTGUG00000003455	SRSF6	53	85.326	ENSAOCG00000004309	-	57	83.152	Amphiprion_ocellaris
ENSTGUG00000003455	SRSF6	54	82.632	ENSAPEG00000020746	-	65	83.152	Amphiprion_percula
ENSTGUG00000003455	SRSF6	53	89.189	ENSAPEG00000013086	-	53	88.649	Amphiprion_percula
ENSTGUG00000003455	SRSF6	53	83.060	ENSATEG00000007255	-	71	82.514	Anabas_testudineus
ENSTGUG00000003455	SRSF6	90	98.718	ENSAPLG00000014472	SRSF6	100	98.718	Anas_platyrhynchos
ENSTGUG00000003455	SRSF6	94	86.850	ENSACAG00000002061	SRSF6	91	87.307	Anolis_carolinensis
ENSTGUG00000003455	SRSF6	94	85.061	ENSANAG00000024080	SRSF6	92	84.520	Aotus_nancymaae
ENSTGUG00000003455	SRSF6	93	62.883	ENSAMXG00000042692	-	96	82.222	Astyanax_mexicanus
ENSTGUG00000003455	SRSF6	93	84.615	ENSBTAG00000008527	SRSF6	93	84.615	Bos_taurus
ENSTGUG00000003455	SRSF6	54	94.681	ENSCJAG00000048403	SRSF6	68	94.022	Callithrix_jacchus
ENSTGUG00000003455	SRSF6	94	70.642	ENSCAFG00000009289	SRSF6	93	85.185	Canis_familiaris
ENSTGUG00000003455	SRSF6	94	70.642	ENSCAFG00020013559	SRSF6	93	85.185	Canis_lupus_dingo
ENSTGUG00000003455	SRSF6	94	84.709	ENSCHIG00000015890	-	93	84.923	Capra_hircus
ENSTGUG00000003455	SRSF6	94	84.098	ENSCHIG00000009148	-	93	84.308	Capra_hircus
ENSTGUG00000003455	SRSF6	54	69.149	ENSTSYG00000026476	SRSF6	91	67.901	Carlito_syrichta
ENSTGUG00000003455	SRSF6	94	73.089	ENSCPOG00000011761	SRSF6	58	97.436	Cavia_porcellus
ENSTGUG00000003455	SRSF6	53	83.422	ENSCCAG00000018540	-	60	83.243	Cebus_capucinus
ENSTGUG00000003455	SRSF6	94	85.061	ENSCCAG00000026018	-	92	84.520	Cebus_capucinus
ENSTGUG00000003455	SRSF6	94	85.015	ENSCATG00000030794	SRSF6	93	84.211	Cercocebus_atys
ENSTGUG00000003455	SRSF6	94	84.802	ENSCLAG00000010247	SRSF6	93	84.308	Chinchilla_lanigera
ENSTGUG00000003455	SRSF6	94	85.015	ENSCSAG00000014022	SRSF6	93	84.211	Chlorocebus_sabaeus
ENSTGUG00000003455	SRSF6	53	95.213	ENSCPBG00000018200	SRSF6	93	92.000	Chrysemys_picta_bellii
ENSTGUG00000003455	SRSF6	94	84.709	ENSCANG00000037774	-	93	83.901	Colobus_angolensis_palliatus
ENSTGUG00000003455	SRSF6	94	70.642	ENSCANG00000042529	-	91	67.492	Colobus_angolensis_palliatus
ENSTGUG00000003455	SRSF6	94	84.404	ENSCGRG00001022339	Srsf6	94	83.591	Cricetulus_griseus_chok1gshd
ENSTGUG00000003455	SRSF6	53	83.957	ENSDARG00000016783	srsf6b	82	91.026	Danio_rerio
ENSTGUG00000003455	SRSF6	94	85.106	ENSDNOG00000008410	SRSF6	92	84.308	Dasypus_novemcinctus
ENSTGUG00000003455	SRSF6	94	84.545	ENSDORG00000028378	Srsf6	93	84.308	Dipodomys_ordii
ENSTGUG00000003455	SRSF6	93	82.663	ENSETEG00000006221	SRSF6	53	87.500	Echinops_telfairi
ENSTGUG00000003455	SRSF6	94	84.709	ENSEASG00005023429	SRSF6	53	94.022	Equus_asinus_asinus
ENSTGUG00000003455	SRSF6	94	84.709	ENSECAG00000023932	SRSF6	56	94.022	Equus_caballus
ENSTGUG00000003455	SRSF6	93	62.037	ENSELUG00000013506	SRSF6	70	88.462	Esox_lucius
ENSTGUG00000003455	SRSF6	90	65.517	ENSELUG00000024182	SRSF6	76	93.590	Esox_lucius
ENSTGUG00000003455	SRSF6	94	70.642	ENSFCAG00000032814	SRSF6	93	85.185	Felis_catus
ENSTGUG00000003455	SRSF6	75	99.618	ENSFALG00000012776	SRSF6	99	99.618	Ficedula_albicollis
ENSTGUG00000003455	SRSF6	94	69.909	ENSFDAG00000012191	SRSF6	92	67.077	Fukomys_damarensis
ENSTGUG00000003455	SRSF6	90	67.949	ENSFHEG00000023065	srsf6a	54	86.413	Fundulus_heteroclitus
ENSTGUG00000003455	SRSF6	52	73.333	ENSGMOG00000006105	srsf6a	62	72.222	Gadus_morhua
ENSTGUG00000003455	SRSF6	53	82.796	ENSGMOG00000014458	srsf6a	51	80.000	Gadus_morhua
ENSTGUG00000003455	SRSF6	100	98.291	ENSGALG00000000990	SRSF6	100	98.291	Gallus_gallus
ENSTGUG00000003455	SRSF6	96	61.408	ENSGACG00000006084	srsf6a	53	83.784	Gasterosteus_aculeatus
ENSTGUG00000003455	SRSF6	53	95.213	ENSGAGG00000003238	SRSF6	93	92.000	Gopherus_agassizii
ENSTGUG00000003455	SRSF6	94	85.061	ENSGGOG00000009808	SRSF6	92	84.520	Gorilla_gorilla
ENSTGUG00000003455	SRSF6	72	71.200	ENSHBUG00000006386	-	57	83.696	Haplochromis_burtoni
ENSTGUG00000003455	SRSF6	94	84.802	ENSHGLG00000007348	SRSF6	93	84.308	Heterocephalus_glaber_female
ENSTGUG00000003455	SRSF6	88	71.242	ENSHGLG00000007701	-	57	71.196	Heterocephalus_glaber_female
ENSTGUG00000003455	SRSF6	94	70.213	ENSHGLG00100005043	SRSF6	92	67.385	Heterocephalus_glaber_male
ENSTGUG00000003455	SRSF6	100	62.069	ENSHCOG00000002740	srsf6a	57	83.696	Hippocampus_comes
ENSTGUG00000003455	SRSF6	61	78.505	ENSIPUG00000004776	-	71	79.227	Ictalurus_punctatus
ENSTGUG00000003455	SRSF6	94	85.061	ENSSTOG00000010866	SRSF6	93	84.520	Ictidomys_tridecemlineatus
ENSTGUG00000003455	SRSF6	89	64.309	ENSKMAG00000011934	srsf6a	59	85.870	Kryptolebias_marmoratus
ENSTGUG00000003455	SRSF6	53	86.413	ENSLBEG00000007356	srsf6a	51	86.957	Labrus_bergylta
ENSTGUG00000003455	SRSF6	93	82.407	ENSLACG00000005466	SRSF6	54	94.022	Latimeria_chalumnae
ENSTGUG00000003455	SRSF6	94	85.015	ENSMFAG00000036925	SRSF6	93	84.211	Macaca_fascicularis
ENSTGUG00000003455	SRSF6	94	85.015	ENSMMUG00000006742	SRSF6	93	84.211	Macaca_mulatta
ENSTGUG00000003455	SRSF6	94	84.404	ENSMNEG00000027392	-	93	83.591	Macaca_nemestrina
ENSTGUG00000003455	SRSF6	93	84.000	ENSMNEG00000038270	-	93	82.972	Macaca_nemestrina
ENSTGUG00000003455	SRSF6	53	88.649	ENSMAMG00000017161	srsf6a	53	88.108	Mastacembelus_armatus
ENSTGUG00000003455	SRSF6	53	83.152	ENSMZEG00005008032	-	57	83.696	Maylandia_zebra
ENSTGUG00000003455	SRSF6	52	82.967	ENSMZEG00005020658	-	60	82.967	Maylandia_zebra
ENSTGUG00000003455	SRSF6	67	95.690	ENSMGAG00000000888	SRSF6	82	94.714	Meleagris_gallopavo
ENSTGUG00000003455	SRSF6	94	79.878	ENSMICG00000008537	SRSF6	92	84.259	Microcebus_murinus
ENSTGUG00000003455	SRSF6	94	84.098	MGP_CAROLIEiJ_G0024606	Srsf6	94	83.282	Mus_caroli
ENSTGUG00000003455	SRSF6	94	84.098	ENSMUSG00000016921	Srsf6	94	83.282	Mus_musculus
ENSTGUG00000003455	SRSF6	94	84.404	MGP_PahariEiJ_G0026050	Srsf6	94	83.591	Mus_pahari
ENSTGUG00000003455	SRSF6	94	84.098	MGP_SPRETEiJ_G0025528	Srsf6	94	83.282	Mus_spretus
ENSTGUG00000003455	SRSF6	54	94.681	ENSMPUG00000017692	SRSF6	64	94.022	Mustela_putorius_furo
ENSTGUG00000003455	SRSF6	54	63.256	ENSMLUG00000016618	SRSF6	53	62.857	Myotis_lucifugus
ENSTGUG00000003455	SRSF6	94	83.792	ENSNGAG00000017560	Srsf6	94	82.353	Nannospalax_galili
ENSTGUG00000003455	SRSF6	52	89.071	ENSNBRG00000001846	-	52	88.108	Neolamprologus_brichardi
ENSTGUG00000003455	SRSF6	94	85.061	ENSNLEG00000006524	SRSF6	92	84.520	Nomascus_leucogenys
ENSTGUG00000003455	SRSF6	53	96.237	ENSMEUG00000014615	SRSF6	61	96.739	Notamacropus_eugenii
ENSTGUG00000003455	SRSF6	72	70.656	ENSONIG00000020247	-	53	84.239	Oreochromis_niloticus
ENSTGUG00000003455	SRSF6	90	71.975	ENSONIG00000001925	-	71	63.529	Oreochromis_niloticus
ENSTGUG00000003455	SRSF6	63	52.511	ENSOCUG00000023999	-	70	53.297	Oryctolagus_cuniculus
ENSTGUG00000003455	SRSF6	54	69.268	ENSOCUG00000009785	-	63	73.822	Oryctolagus_cuniculus
ENSTGUG00000003455	SRSF6	54	94.149	ENSOGAG00000014468	SRSF6	53	93.478	Otolemur_garnettii
ENSTGUG00000003455	SRSF6	54	87.234	ENSOARG00000003117	SRSF6	93	82.154	Ovis_aries
ENSTGUG00000003455	SRSF6	90	74.441	ENSPPAG00000043131	-	57	79.891	Pan_paniscus
ENSTGUG00000003455	SRSF6	94	84.756	ENSPPAG00000034327	-	92	84.211	Pan_paniscus
ENSTGUG00000003455	SRSF6	94	70.642	ENSPPRG00000008917	SRSF6	93	85.185	Panthera_pardus
ENSTGUG00000003455	SRSF6	94	84.756	ENSPTRG00000044686	-	92	84.211	Pan_troglodytes
ENSTGUG00000003455	SRSF6	90	74.441	ENSPTRG00000046274	-	57	79.891	Pan_troglodytes
ENSTGUG00000003455	SRSF6	94	85.015	ENSPANG00000035224	SRSF6	93	84.211	Papio_anubis
ENSTGUG00000003455	SRSF6	51	75.275	ENSPKIG00000015703	-	95	62.000	Paramormyrops_kingsleyae
ENSTGUG00000003455	SRSF6	100	68.267	ENSPKIG00000018463	-	77	94.872	Paramormyrops_kingsleyae
ENSTGUG00000003455	SRSF6	89	72.347	ENSPMGG00000014963	srsf6a	55	88.043	Periophthalmus_magnuspinnatus
ENSTGUG00000003455	SRSF6	53	85.938	ENSPFOG00000006437	srsf6a	50	85.714	Poecilia_formosa
ENSTGUG00000003455	SRSF6	89	64.923	ENSPLAG00000009243	srsf6a	80	82.677	Poecilia_latipinna
ENSTGUG00000003455	SRSF6	89	67.089	ENSPMEG00000006042	SRSF6	53	88.043	Poecilia_mexicana
ENSTGUG00000003455	SRSF6	94	85.061	ENSPPYG00000011019	SRSF6	92	84.520	Pongo_abelii
ENSTGUG00000003455	SRSF6	53	94.624	ENSPCAG00000010954	SRSF6	55	94.022	Procavia_capensis
ENSTGUG00000003455	SRSF6	94	69.817	ENSPCOG00000026364	SRSF6	92	84.568	Propithecus_coquereli
ENSTGUG00000003455	SRSF6	94	84.709	ENSPVAG00000015232	SRSF6	93	83.901	Pteropus_vampyrus
ENSTGUG00000003455	SRSF6	53	83.152	ENSPNYG00000004944	-	57	83.696	Pundamilia_nyererei
ENSTGUG00000003455	SRSF6	94	84.098	ENSRNOG00000006380	Srsf6	94	83.282	Rattus_norvegicus
ENSTGUG00000003455	SRSF6	93	82.769	ENSRBIG00000041414	SRSF6	93	81.115	Rhinopithecus_bieti
ENSTGUG00000003455	SRSF6	94	85.015	ENSRROG00000029989	SRSF6	93	84.211	Rhinopithecus_roxellana
ENSTGUG00000003455	SRSF6	93	62.229	ENSSBOG00000034078	-	54	73.626	Saimiri_boliviensis_boliviensis
ENSTGUG00000003455	SRSF6	94	85.061	ENSSBOG00000033708	-	92	84.520	Saimiri_boliviensis_boliviensis
ENSTGUG00000003455	SRSF6	93	64.986	ENSSFOG00015019681	-	53	82.383	Scleropages_formosus
ENSTGUG00000003455	SRSF6	84	68.942	ENSSFOG00015015169	SRSF6	59	88.587	Scleropages_formosus
ENSTGUG00000003455	SRSF6	53	79.235	ENSSMAG00000017447	-	55	79.781	Scophthalmus_maximus
ENSTGUG00000003455	SRSF6	53	88.649	ENSSDUG00000016097	srsf6a	53	88.108	Seriola_dumerili
ENSTGUG00000003455	SRSF6	53	88.649	ENSSLDG00000022841	srsf6a	53	88.108	Seriola_lalandi_dorsalis
ENSTGUG00000003455	SRSF6	100	95.690	ENSSPUG00000004967	SRSF6	93	88.235	Sphenodon_punctatus
ENSTGUG00000003455	SRSF6	76	70.149	ENSSPAG00000002362	srsf6a	66	87.234	Stegastes_partitus
ENSTGUG00000003455	SRSF6	94	84.404	ENSSSCG00000007362	SRSF6	93	84.308	Sus_scrofa
ENSTGUG00000003455	SRSF6	89	69.872	ENSTNIG00000001692	srsf6a	56	85.405	Tetraodon_nigroviridis
ENSTGUG00000003455	SRSF6	85	79.322	ENSTBEG00000013448	SRSF6	91	78.966	Tupaia_belangeri
ENSTGUG00000003455	SRSF6	94	70.642	ENSUAMG00000003559	SRSF6	93	85.185	Ursus_americanus
ENSTGUG00000003455	SRSF6	75	96.296	ENSVPAG00000003016	SRSF6	73	96.296	Vicugna_pacos
ENSTGUG00000003455	SRSF6	53	87.500	ENSXMAG00000021849	srsf6a	55	86.413	Xiphophorus_maculatus