EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000003748 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 24817 bases
Position: chr25:338378-363194
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000003883	EST1	PF10374.9	1.9e-24	1	1
ENSTGUP00000003883	EST1_DNA_bind	PF10373.9	8.7e-41	1	2
ENSTGUP00000003883	EST1_DNA_bind	PF10373.9	8.7e-41	2	2
ENSTGUP00000003883	PIN_4	PF13638.6	9.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000003925	-	3072	-	ENSTGUP00000003883	1023 (aa)	-	H0YZZ8

Gene Model

Click here to download ENSTGUG00000003748's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000003748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000003748	-	100	80.371	ENSG00000198952	SMG5	99	80.613	Homo_sapiens
ENSTGUG00000003748	-	99	67.289	ENSAPOG00000019690	smg5	99	67.618	Acanthochromis_polyacanthus
ENSTGUG00000003748	-	98	77.468	ENSAMEG00000014458	SMG5	100	77.468	Ailuropoda_melanoleuca
ENSTGUG00000003748	-	99	66.475	ENSACIG00000001353	smg5	99	66.892	Amphilophus_citrinellus
ENSTGUG00000003748	-	99	65.107	ENSAOCG00000019483	smg5	99	63.936	Amphiprion_ocellaris
ENSTGUG00000003748	-	99	66.407	ENSAPEG00000022949	smg5	98	67.557	Amphiprion_percula
ENSTGUG00000003748	-	99	67.406	ENSATEG00000005348	smg5	99	68.340	Anabas_testudineus
ENSTGUG00000003748	-	98	92.982	ENSAPLG00000010263	SMG5	100	92.982	Anas_platyrhynchos
ENSTGUG00000003748	-	100	80.273	ENSANAG00000032899	SMG5	99	80.514	Aotus_nancymaae
ENSTGUG00000003748	-	99	66.635	ENSACLG00000009311	smg5	99	67.977	Astatotilapia_calliptera
ENSTGUG00000003748	-	50	61.243	ENSAMXG00000024616	smg5	99	64.522	Astyanax_mexicanus
ENSTGUG00000003748	-	99	43.249	ENSBTAG00000021747	-	98	42.970	Bos_taurus
ENSTGUG00000003748	-	100	79.785	ENSBTAG00000009435	SMG5	99	80.020	Bos_taurus
ENSTGUG00000003748	-	100	80.469	ENSCJAG00000005684	SMG5	99	80.712	Callithrix_jacchus
ENSTGUG00000003748	-	100	79.102	ENSCAFG00000016839	SMG5	99	79.327	Canis_familiaris
ENSTGUG00000003748	-	100	79.102	ENSCAFG00020006061	SMG5	99	79.327	Canis_lupus_dingo
ENSTGUG00000003748	-	99	43.193	ENSCHIG00000006323	-	99	42.857	Capra_hircus
ENSTGUG00000003748	-	100	79.688	ENSCHIG00000007709	SMG5	99	79.921	Capra_hircus
ENSTGUG00000003748	-	100	80.195	ENSTSYG00000004099	SMG5	99	80.040	Carlito_syrichta
ENSTGUG00000003748	-	95	60.288	ENSCAPG00000003631	SMG5	100	60.103	Cavia_aperea
ENSTGUG00000003748	-	100	79.825	ENSCPOG00000015696	SMG5	99	80.059	Cavia_porcellus
ENSTGUG00000003748	-	100	80.604	ENSCCAG00000027409	SMG5	99	80.849	Cebus_capucinus
ENSTGUG00000003748	-	100	80.371	ENSCATG00000030539	SMG5	99	80.613	Cercocebus_atys
ENSTGUG00000003748	-	100	79.922	ENSCLAG00000003983	SMG5	99	80.257	Chinchilla_lanigera
ENSTGUG00000003748	-	100	80.371	ENSCSAG00000002120	SMG5	99	80.613	Chlorocebus_sabaeus
ENSTGUG00000003748	-	54	84.588	ENSCHOG00000008741	-	57	84.588	Choloepus_hoffmanni
ENSTGUG00000003748	-	93	88.450	ENSCPBG00000025848	SMG5	100	88.349	Chrysemys_picta_bellii
ENSTGUG00000003748	-	93	33.367	ENSCING00000008706	-	98	34.086	Ciona_intestinalis
ENSTGUG00000003748	-	100	76.660	ENSCANG00000029208	SMG5	99	76.855	Colobus_angolensis_palliatus
ENSTGUG00000003748	-	100	79.532	ENSCGRG00001006336	Smg5	99	79.566	Cricetulus_griseus_chok1gshd
ENSTGUG00000003748	-	98	79.520	ENSCGRG00000005111	Smg5	100	79.300	Cricetulus_griseus_crigri
ENSTGUG00000003748	-	99	66.602	ENSCSEG00000014220	smg5	99	67.351	Cynoglossus_semilaevis
ENSTGUG00000003748	-	99	61.224	ENSCVAG00000000529	smg5	99	61.891	Cyprinodon_variegatus
ENSTGUG00000003748	-	53	61.456	ENSDARG00000041481	smg5	99	64.914	Danio_rerio
ENSTGUG00000003748	-	100	76.562	ENSDNOG00000000051	SMG5	99	76.756	Dasypus_novemcinctus
ENSTGUG00000003748	-	92	35.895	ENSDNOG00000039862	-	100	35.812	Dasypus_novemcinctus
ENSTGUG00000003748	-	100	79.727	ENSDORG00000010382	Smg5	99	79.862	Dipodomys_ordii
ENSTGUG00000003748	-	64	37.778	FBgn0019890	Smg5	59	33.136	Drosophila_melanogaster
ENSTGUG00000003748	-	82	89.320	ENSETEG00000010336	SMG5	90	89.320	Echinops_telfairi
ENSTGUG00000003748	-	100	80.371	ENSEASG00005019122	SMG5	99	80.613	Equus_asinus_asinus
ENSTGUG00000003748	-	100	80.273	ENSECAG00000001389	SMG5	99	80.514	Equus_caballus
ENSTGUG00000003748	-	72	93.983	ENSEEUG00000012690	SMG5	75	93.983	Erinaceus_europaeus
ENSTGUG00000003748	-	99	67.085	ENSELUG00000012585	smg5	99	67.604	Esox_lucius
ENSTGUG00000003748	-	100	78.711	ENSFCAG00000011783	SMG5	99	79.031	Felis_catus
ENSTGUG00000003748	-	59	96.844	ENSFALG00000001166	-	100	96.844	Ficedula_albicollis
ENSTGUG00000003748	-	97	78.700	ENSFDAG00000017388	SMG5	100	78.800	Fukomys_damarensis
ENSTGUG00000003748	-	94	62.551	ENSFHEG00000013939	smg5	98	62.679	Fundulus_heteroclitus
ENSTGUG00000003748	-	99	62.289	ENSGMOG00000007310	smg5	99	63.313	Gadus_morhua
ENSTGUG00000003748	-	100	88.582	ENSGALG00000029918	-	100	88.011	Gallus_gallus
ENSTGUG00000003748	-	73	76.802	ENSGAFG00000021691	smg5	99	59.511	Gambusia_affinis
ENSTGUG00000003748	-	99	62.399	ENSGACG00000013142	smg5	99	63.456	Gasterosteus_aculeatus
ENSTGUG00000003748	-	100	88.899	ENSGAGG00000016131	SMG5	100	88.805	Gopherus_agassizii
ENSTGUG00000003748	-	100	80.371	ENSGGOG00000010932	SMG5	99	80.613	Gorilla_gorilla
ENSTGUG00000003748	-	99	66.383	ENSHBUG00000008654	smg5	99	67.681	Haplochromis_burtoni
ENSTGUG00000003748	-	100	78.265	ENSHGLG00000019152	SMG5	99	78.480	Heterocephalus_glaber_female
ENSTGUG00000003748	-	90	79.022	ENSHGLG00100015948	SMG5	99	79.103	Heterocephalus_glaber_male
ENSTGUG00000003748	-	88	74.101	ENSHCOG00000010229	smg5	94	73.913	Hippocampus_comes
ENSTGUG00000003748	-	99	63.504	ENSIPUG00000006624	Smg5	99	64.481	Ictalurus_punctatus
ENSTGUG00000003748	-	100	80.078	ENSSTOG00000001780	SMG5	99	80.317	Ictidomys_tridecemlineatus
ENSTGUG00000003748	-	100	79.260	ENSJJAG00000022763	Smg5	99	79.290	Jaculus_jaculus
ENSTGUG00000003748	-	50	60.862	ENSKMAG00000014586	smg5	99	63.612	Kryptolebias_marmoratus
ENSTGUG00000003748	-	99	66.699	ENSLBEG00000002145	smg5	99	67.406	Labrus_bergylta
ENSTGUG00000003748	-	100	68.251	ENSLACG00000010521	SMG5	99	68.654	Latimeria_chalumnae
ENSTGUG00000003748	-	54	50.247	ENSLOCG00000008380	smg5	98	63.250	Lepisosteus_oculatus
ENSTGUG00000003748	-	99	79.646	ENSLAFG00000006241	SMG5	99	79.822	Loxodonta_africana
ENSTGUG00000003748	-	100	80.371	ENSMFAG00000045357	SMG5	99	80.613	Macaca_fascicularis
ENSTGUG00000003748	-	100	80.371	ENSMMUG00000000090	SMG5	99	80.613	Macaca_mulatta
ENSTGUG00000003748	-	100	80.273	ENSMNEG00000044425	SMG5	99	80.514	Macaca_nemestrina
ENSTGUG00000003748	-	100	74.416	ENSMLEG00000041192	SMG5	99	74.581	Mandrillus_leucophaeus
ENSTGUG00000003748	-	99	62.533	ENSMAMG00000010683	smg5	100	62.921	Mastacembelus_armatus
ENSTGUG00000003748	-	99	64.117	ENSMZEG00005015815	smg5	99	65.589	Maylandia_zebra
ENSTGUG00000003748	-	63	60.178	ENSMZEG00005016543	smg5	100	61.252	Maylandia_zebra
ENSTGUG00000003748	-	55	44.792	ENSMAUG00000000043	-	96	45.156	Mesocricetus_auratus
ENSTGUG00000003748	-	100	78.850	ENSMAUG00000010381	Smg5	99	78.973	Mesocricetus_auratus
ENSTGUG00000003748	-	100	80.469	ENSMICG00000002257	SMG5	99	80.712	Microcebus_murinus
ENSTGUG00000003748	-	100	78.502	ENSMOCG00000016590	Smg5	99	78.325	Microtus_ochrogaster
ENSTGUG00000003748	-	99	61.111	ENSMMOG00000017199	smg5	99	61.725	Mola_mola
ENSTGUG00000003748	-	79	38.155	ENSMODG00000004532	-	86	38.095	Monodelphis_domestica
ENSTGUG00000003748	-	76	37.624	ENSMODG00000010675	-	87	37.624	Monodelphis_domestica
ENSTGUG00000003748	-	81	38.631	ENSMODG00000004735	-	91	38.631	Monodelphis_domestica
ENSTGUG00000003748	-	97	34.125	ENSMODG00000004511	-	99	34.154	Monodelphis_domestica
ENSTGUG00000003748	-	87	82.701	ENSMODG00000016901	SMG5	97	82.899	Monodelphis_domestica
ENSTGUG00000003748	-	99	61.977	ENSMALG00000010375	smg5	99	62.567	Monopterus_albus
ENSTGUG00000003748	-	100	79.630	MGP_CAROLIEiJ_G0025163	Smg5	100	95.028	Mus_caroli
ENSTGUG00000003748	-	100	79.727	ENSMUSG00000001415	Smg5	99	95.028	Mus_musculus
ENSTGUG00000003748	-	100	79.357	MGP_PahariEiJ_G0026606	Smg5	100	95.028	Mus_pahari
ENSTGUG00000003748	-	100	79.630	MGP_SPRETEiJ_G0026104	Smg5	100	95.028	Mus_spretus
ENSTGUG00000003748	-	93	77.116	ENSMPUG00000004546	SMG5	100	77.116	Mustela_putorius_furo
ENSTGUG00000003748	-	100	79.337	ENSMLUG00000008518	SMG5	99	79.368	Myotis_lucifugus
ENSTGUG00000003748	-	99	43.246	ENSNGAG00000012101	-	98	44.024	Nannospalax_galili
ENSTGUG00000003748	-	100	79.512	ENSNGAG00000020706	Smg5	99	80.079	Nannospalax_galili
ENSTGUG00000003748	-	96	64.393	ENSNBRG00000004332	smg5	97	65.832	Neolamprologus_brichardi
ENSTGUG00000003748	-	100	80.371	ENSNLEG00000012439	SMG5	99	80.613	Nomascus_leucogenys
ENSTGUG00000003748	-	100	80.780	ENSMEUG00000012834	SMG5	99	80.929	Notamacropus_eugenii
ENSTGUG00000003748	-	100	78.711	ENSOPRG00000009152	SMG5	99	78.932	Ochotona_princeps
ENSTGUG00000003748	-	100	79.863	ENSODEG00000012237	SMG5	99	80.099	Octodon_degus
ENSTGUG00000003748	-	99	62.378	ENSONIG00000008632	smg5	99	64.324	Oreochromis_niloticus
ENSTGUG00000003748	-	89	39.348	ENSOCUG00000023338	-	99	39.565	Oryctolagus_cuniculus
ENSTGUG00000003748	-	98	80.180	ENSOCUG00000012886	SMG5	100	80.180	Oryctolagus_cuniculus
ENSTGUG00000003748	-	99	61.896	ENSORLG00000016239	smg5	99	64.982	Oryzias_latipes
ENSTGUG00000003748	-	99	65.761	ENSORLG00020013127	smg5	99	67.679	Oryzias_latipes_hni
ENSTGUG00000003748	-	99	65.861	ENSORLG00015019014	smg5	99	67.871	Oryzias_latipes_hsok
ENSTGUG00000003748	-	82	60.986	ENSOMEG00000021330	smg5	92	62.959	Oryzias_melastigma
ENSTGUG00000003748	-	100	79.199	ENSOGAG00000004966	SMG5	99	79.327	Otolemur_garnettii
ENSTGUG00000003748	-	99	43.470	ENSOARG00000011963	-	99	42.857	Ovis_aries
ENSTGUG00000003748	-	100	79.590	ENSOARG00000005778	SMG5	99	79.822	Ovis_aries
ENSTGUG00000003748	-	100	80.176	ENSPPAG00000011996	SMG5	99	80.415	Pan_paniscus
ENSTGUG00000003748	-	98	78.579	ENSPPRG00000011901	SMG5	100	78.579	Panthera_pardus
ENSTGUG00000003748	-	97	73.562	ENSPTIG00000007892	SMG5	98	73.562	Panthera_tigris_altaica
ENSTGUG00000003748	-	100	80.176	ENSPTRG00000049282	-	99	80.415	Pan_troglodytes
ENSTGUG00000003748	-	100	80.176	ENSPTRG00000023925	SMG5	99	80.415	Pan_troglodytes
ENSTGUG00000003748	-	100	80.371	ENSPANG00000011201	SMG5	99	80.613	Papio_anubis
ENSTGUG00000003748	-	99	67.220	ENSPKIG00000009402	smg5	99	67.483	Paramormyrops_kingsleyae
ENSTGUG00000003748	-	98	90.387	ENSPSIG00000015198	SMG5	100	90.387	Pelodiscus_sinensis
ENSTGUG00000003748	-	99	60.806	ENSPMGG00000010465	smg5	99	62.292	Periophthalmus_magnuspinnatus
ENSTGUG00000003748	-	57	45.318	ENSPEMG00000010022	-	96	44.572	Peromyscus_maniculatus_bairdii
ENSTGUG00000003748	-	100	78.676	ENSPEMG00000001819	Smg5	99	79.191	Peromyscus_maniculatus_bairdii
ENSTGUG00000003748	-	98	50.048	ENSPMAG00000000410	smg5	99	51.297	Petromyzon_marinus
ENSTGUG00000003748	-	100	81.774	ENSPCIG00000018938	SMG5	99	82.034	Phascolarctos_cinereus
ENSTGUG00000003748	-	50	60.584	ENSPFOG00000010191	smg5	99	63.003	Poecilia_formosa
ENSTGUG00000003748	-	50	60.109	ENSPLAG00000009332	smg5	99	62.956	Poecilia_latipinna
ENSTGUG00000003748	-	99	65.326	ENSPMEG00000014105	smg5	99	66.186	Poecilia_mexicana
ENSTGUG00000003748	-	93	70.507	ENSPREG00000017713	smg5	99	63.134	Poecilia_reticulata
ENSTGUG00000003748	-	100	80.566	ENSPPYG00000000723	SMG5	99	80.811	Pongo_abelii
ENSTGUG00000003748	-	76	86.188	ENSPCAG00000008412	SMG5	80	86.188	Procavia_capensis
ENSTGUG00000003748	-	100	80.762	ENSPCOG00000004741	SMG5	99	81.009	Propithecus_coquereli
ENSTGUG00000003748	-	95	93.000	ENSPVAG00000016748	SMG5	94	96.552	Pteropus_vampyrus
ENSTGUG00000003748	-	99	62.511	ENSPNYG00000013397	smg5	99	63.443	Pundamilia_nyererei
ENSTGUG00000003748	-	99	63.645	ENSPNAG00000028363	smg5	99	65.174	Pygocentrus_nattereri
ENSTGUG00000003748	-	100	79.240	ENSRNOG00000019590	Smg5	99	79.368	Rattus_norvegicus
ENSTGUG00000003748	-	100	80.078	ENSRBIG00000027428	SMG5	99	80.317	Rhinopithecus_bieti
ENSTGUG00000003748	-	100	79.980	ENSRROG00000030035	SMG5	99	80.218	Rhinopithecus_roxellana
ENSTGUG00000003748	-	100	80.469	ENSSBOG00000033339	SMG5	99	80.712	Saimiri_boliviensis_boliviensis
ENSTGUG00000003748	-	99	33.977	ENSSHAG00000009572	-	98	34.314	Sarcophilus_harrisii
ENSTGUG00000003748	-	98	81.312	ENSSHAG00000014163	SMG5	100	81.312	Sarcophilus_harrisii
ENSTGUG00000003748	-	64	37.714	ENSSHAG00000000935	-	84	37.713	Sarcophilus_harrisii
ENSTGUG00000003748	-	76	38.918	ENSSHAG00000000561	-	98	37.037	Sarcophilus_harrisii
ENSTGUG00000003748	-	99	68.222	ENSSFOG00015024175	smg5	99	68.493	Scleropages_formosus
ENSTGUG00000003748	-	99	61.313	ENSSMAG00000013059	smg5	99	63.102	Scophthalmus_maximus
ENSTGUG00000003748	-	99	61.951	ENSSDUG00000007122	smg5	99	63.467	Seriola_dumerili
ENSTGUG00000003748	-	99	61.905	ENSSLDG00000011418	smg5	99	64.050	Seriola_lalandi_dorsalis
ENSTGUG00000003748	-	90	68.973	ENSSARG00000012484	SMG5	99	69.079	Sorex_araneus
ENSTGUG00000003748	-	93	86.754	ENSSPUG00000002260	SMG5	100	86.552	Sphenodon_punctatus
ENSTGUG00000003748	-	99	66.089	ENSSPAG00000014266	smg5	98	67.052	Stegastes_partitus
ENSTGUG00000003748	-	53	37.982	ENSSSCG00000037182	-	87	37.294	Sus_scrofa
ENSTGUG00000003748	-	100	80.469	ENSSSCG00000006490	-	100	79.833	Sus_scrofa
ENSTGUG00000003748	-	99	62.549	ENSSSCG00000039308	-	99	62.611	Sus_scrofa
ENSTGUG00000003748	-	99	65.385	ENSTRUG00000012580	smg5	99	65.863	Takifugu_rubripes
ENSTGUG00000003748	-	99	66.184	ENSTNIG00000010303	smg5	99	66.311	Tetraodon_nigroviridis
ENSTGUG00000003748	-	57	96.552	ENSTBEG00000002777	SMG5	59	96.552	Tupaia_belangeri
ENSTGUG00000003748	-	100	75.586	ENSTTRG00000001401	SMG5	99	75.767	Tursiops_truncatus
ENSTGUG00000003748	-	100	78.711	ENSUAMG00000013721	SMG5	99	78.932	Ursus_americanus
ENSTGUG00000003748	-	98	74.950	ENSUMAG00000018041	SMG5	99	73.788	Ursus_maritimus
ENSTGUG00000003748	-	97	71.242	ENSVPAG00000009446	SMG5	99	71.242	Vicugna_pacos
ENSTGUG00000003748	-	100	79.492	ENSVVUG00000005887	SMG5	99	79.525	Vulpes_vulpes
ENSTGUG00000003748	-	76	69.899	ENSXETG00000033791	SMG5	99	69.521	Xenopus_tropicalis
ENSTGUG00000003748	-	76	68.649	ENSXCOG00000004379	smg5	94	69.231	Xiphophorus_couchianus
ENSTGUG00000003748	-	99	65.537	ENSXMAG00000013499	smg5	99	65.959	Xiphophorus_maculatus