EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000004007 (Gene tree)
Gene ID: 100228053
Gene Symbol: EDC3
Alias: FLJ21128|LSM16|YJDC|YJEFN2|hYjeF_N2-15q23
Full Name: enhancer of mRNA decapping 3
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Plus strand
Length: 25612 bases
Position: chr10:1987062-2012673
Accession: 100228053
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000004122	FDF	PF09532.10	1.4e-15	1	1
ENSTGUP00000004122	LSM14	PF12701.7	6.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000004167	EDC3-201	1521	XM_002195789	ENSTGUP00000004122	506 (aa)	XP_002195825	H0Z0N5

Gene Model

Click here to download ENSTGUG00000004007's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000004007's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000004007	EDC3	100	88.189	ENSG00000179151	EDC3	100	98.148	Homo_sapiens
ENSTGUG00000004007	EDC3	99	56.031	ENSAPOG00000008655	EDC3	99	56.031	Acanthochromis_polyacanthus
ENSTGUG00000004007	EDC3	100	69.941	ENSAPOG00000010791	edc3	100	69.941	Acanthochromis_polyacanthus
ENSTGUG00000004007	EDC3	100	87.598	ENSAMEG00000008963	EDC3	100	87.598	Ailuropoda_melanoleuca
ENSTGUG00000004007	EDC3	99	59.570	ENSACIG00000005330	EDC3	99	59.570	Amphilophus_citrinellus
ENSTGUG00000004007	EDC3	100	68.245	ENSACIG00000017751	edc3	100	68.245	Amphilophus_citrinellus
ENSTGUG00000004007	EDC3	100	69.941	ENSAOCG00000005431	edc3	100	69.941	Amphiprion_ocellaris
ENSTGUG00000004007	EDC3	99	58.904	ENSAOCG00000009103	-	99	58.904	Amphiprion_ocellaris
ENSTGUG00000004007	EDC3	99	58.317	ENSAPEG00000007841	EDC3	99	58.317	Amphiprion_percula
ENSTGUG00000004007	EDC3	100	69.941	ENSAPEG00000000968	edc3	100	69.941	Amphiprion_percula
ENSTGUG00000004007	EDC3	100	70.611	ENSATEG00000015505	edc3	100	70.611	Anabas_testudineus
ENSTGUG00000004007	EDC3	100	59.117	ENSATEG00000004205	-	100	59.117	Anabas_testudineus
ENSTGUG00000004007	EDC3	90	95.585	ENSAPLG00000008957	EDC3	100	95.585	Anas_platyrhynchos
ENSTGUG00000004007	EDC3	78	89.646	ENSACAG00000000460	-	100	89.646	Anolis_carolinensis
ENSTGUG00000004007	EDC3	100	88.386	ENSANAG00000024078	EDC3	100	88.386	Aotus_nancymaae
ENSTGUG00000004007	EDC3	99	60.196	ENSACLG00000018776	-	99	60.196	Astatotilapia_calliptera
ENSTGUG00000004007	EDC3	100	68.639	ENSACLG00000007232	edc3	100	68.639	Astatotilapia_calliptera
ENSTGUG00000004007	EDC3	100	70.577	ENSAMXG00000001589	edc3	100	70.577	Astyanax_mexicanus
ENSTGUG00000004007	EDC3	100	88.386	ENSBTAG00000007308	EDC3	100	88.386	Bos_taurus
ENSTGUG00000004007	EDC3	100	88.386	ENSCJAG00000017681	EDC3	100	88.386	Callithrix_jacchus
ENSTGUG00000004007	EDC3	100	87.795	ENSCAFG00000017935	EDC3	100	87.795	Canis_familiaris
ENSTGUG00000004007	EDC3	100	87.795	ENSCAFG00020003909	EDC3	100	87.795	Canis_lupus_dingo
ENSTGUG00000004007	EDC3	100	88.583	ENSCHIG00000023658	EDC3	100	88.583	Capra_hircus
ENSTGUG00000004007	EDC3	100	88.189	ENSTSYG00000004822	EDC3	100	88.189	Carlito_syrichta
ENSTGUG00000004007	EDC3	100	87.402	ENSCPOG00000015595	EDC3	100	87.402	Cavia_porcellus
ENSTGUG00000004007	EDC3	100	88.583	ENSCCAG00000021663	EDC3	100	88.583	Cebus_capucinus
ENSTGUG00000004007	EDC3	100	88.780	ENSCATG00000037511	EDC3	100	88.780	Cercocebus_atys
ENSTGUG00000004007	EDC3	100	86.811	ENSCLAG00000005700	EDC3	100	86.811	Chinchilla_lanigera
ENSTGUG00000004007	EDC3	100	88.780	ENSCSAG00000014239	EDC3	100	88.780	Chlorocebus_sabaeus
ENSTGUG00000004007	EDC3	100	92.717	ENSCPBG00000024239	EDC3	100	92.717	Chrysemys_picta_bellii
ENSTGUG00000004007	EDC3	100	37.524	ENSCING00000022142	-	99	37.670	Ciona_intestinalis
ENSTGUG00000004007	EDC3	100	88.780	ENSCANG00000028699	EDC3	100	88.780	Colobus_angolensis_palliatus
ENSTGUG00000004007	EDC3	100	88.976	ENSCGRG00001013874	Edc3	100	88.976	Cricetulus_griseus_chok1gshd
ENSTGUG00000004007	EDC3	100	88.976	ENSCGRG00000011885	Edc3	100	88.976	Cricetulus_griseus_crigri
ENSTGUG00000004007	EDC3	99	70.553	ENSCSEG00000012996	edc3	99	70.553	Cynoglossus_semilaevis
ENSTGUG00000004007	EDC3	100	69.428	ENSCVAG00000008023	edc3	100	69.428	Cyprinodon_variegatus
ENSTGUG00000004007	EDC3	99	70.196	ENSDARG00000051931	edc3	99	70.196	Danio_rerio
ENSTGUG00000004007	EDC3	100	77.670	ENSDNOG00000030661	EDC3	100	77.670	Dasypus_novemcinctus
ENSTGUG00000004007	EDC3	64	100.000	ENSETEG00000002398	-	64	100.000	Echinops_telfairi
ENSTGUG00000004007	EDC3	100	88.583	ENSEASG00005005071	EDC3	100	88.583	Equus_asinus_asinus
ENSTGUG00000004007	EDC3	100	88.583	ENSECAG00000017994	EDC3	100	88.583	Equus_caballus
ENSTGUG00000004007	EDC3	100	62.549	ENSELUG00000007607	EDC3	100	62.549	Esox_lucius
ENSTGUG00000004007	EDC3	100	66.145	ENSELUG00000005794	edc3	100	66.145	Esox_lucius
ENSTGUG00000004007	EDC3	100	87.008	ENSFCAG00000002014	EDC3	100	87.008	Felis_catus
ENSTGUG00000004007	EDC3	98	94.165	ENSFALG00000004543	EDC3	96	94.165	Ficedula_albicollis
ENSTGUG00000004007	EDC3	100	87.205	ENSFDAG00000012582	EDC3	100	87.205	Fukomys_damarensis
ENSTGUG00000004007	EDC3	100	70.414	ENSFHEG00000009375	edc3	100	70.414	Fundulus_heteroclitus
ENSTGUG00000004007	EDC3	100	69.412	ENSGMOG00000002715	edc3	100	69.804	Gadus_morhua
ENSTGUG00000004007	EDC3	100	97.431	ENSGALG00000040181	EDC3	100	97.431	Gallus_gallus
ENSTGUG00000004007	EDC3	100	67.850	ENSGAFG00000014433	edc3	100	67.850	Gambusia_affinis
ENSTGUG00000004007	EDC3	100	68.836	ENSGACG00000009783	edc3	100	68.836	Gasterosteus_aculeatus
ENSTGUG00000004007	EDC3	99	56.445	ENSGACG00000014671	EDC3	99	56.505	Gasterosteus_aculeatus
ENSTGUG00000004007	EDC3	100	92.702	ENSGAGG00000023477	EDC3	100	92.702	Gopherus_agassizii
ENSTGUG00000004007	EDC3	100	88.189	ENSGGOG00000003552	EDC3	100	88.189	Gorilla_gorilla
ENSTGUG00000004007	EDC3	99	60.196	ENSHBUG00000020817	EDC3	99	60.196	Haplochromis_burtoni
ENSTGUG00000004007	EDC3	100	68.639	ENSHBUG00000003635	edc3	100	68.639	Haplochromis_burtoni
ENSTGUG00000004007	EDC3	100	66.798	ENSHCOG00000016834	edc3	100	67.976	Hippocampus_comes
ENSTGUG00000004007	EDC3	99	70.059	ENSIPUG00000005695	edc3	100	70.059	Ictalurus_punctatus
ENSTGUG00000004007	EDC3	100	88.583	ENSSTOG00000013936	EDC3	100	88.583	Ictidomys_tridecemlineatus
ENSTGUG00000004007	EDC3	100	88.583	ENSJJAG00000008074	Edc3	100	88.583	Jaculus_jaculus
ENSTGUG00000004007	EDC3	99	56.719	ENSKMAG00000001987	EDC3	99	56.719	Kryptolebias_marmoratus
ENSTGUG00000004007	EDC3	100	68.442	ENSKMAG00000001243	edc3	100	69.428	Kryptolebias_marmoratus
ENSTGUG00000004007	EDC3	99	57.422	ENSLBEG00000017984	EDC3	100	57.310	Labrus_bergylta
ENSTGUG00000004007	EDC3	100	69.155	ENSLBEG00000013435	edc3	99	69.822	Labrus_bergylta
ENSTGUG00000004007	EDC3	100	79.572	ENSLACG00000014149	EDC3	100	79.572	Latimeria_chalumnae
ENSTGUG00000004007	EDC3	100	68.102	ENSLOCG00000014625	edc3	100	68.689	Lepisosteus_oculatus
ENSTGUG00000004007	EDC3	100	88.363	ENSLAFG00000002992	EDC3	100	88.363	Loxodonta_africana
ENSTGUG00000004007	EDC3	100	88.386	ENSMFAG00000043074	EDC3	100	88.386	Macaca_fascicularis
ENSTGUG00000004007	EDC3	100	88.386	ENSMMUG00000011071	EDC3	100	88.386	Macaca_mulatta
ENSTGUG00000004007	EDC3	100	88.386	ENSMNEG00000035316	EDC3	100	88.386	Macaca_nemestrina
ENSTGUG00000004007	EDC3	100	88.780	ENSMLEG00000030372	EDC3	100	88.780	Mandrillus_leucophaeus
ENSTGUG00000004007	EDC3	100	57.617	ENSMAMG00000005423	-	100	57.617	Mastacembelus_armatus
ENSTGUG00000004007	EDC3	100	69.034	ENSMAMG00000000505	edc3	100	69.034	Mastacembelus_armatus
ENSTGUG00000004007	EDC3	100	68.639	ENSMZEG00005004892	edc3	100	68.639	Maylandia_zebra
ENSTGUG00000004007	EDC3	99	60.000	ENSMZEG00005005654	EDC3	99	60.000	Maylandia_zebra
ENSTGUG00000004007	EDC3	100	96.443	ENSMGAG00000002617	EDC3	100	96.443	Meleagris_gallopavo
ENSTGUG00000004007	EDC3	100	87.992	ENSMICG00000043190	EDC3	100	87.992	Microcebus_murinus
ENSTGUG00000004007	EDC3	100	88.583	ENSMOCG00000016205	Edc3	100	88.583	Microtus_ochrogaster
ENSTGUG00000004007	EDC3	99	69.291	ENSMMOG00000012278	edc3	99	69.763	Mola_mola
ENSTGUG00000004007	EDC3	100	90.748	ENSMODG00000009442	EDC3	100	90.748	Monodelphis_domestica
ENSTGUG00000004007	EDC3	100	69.822	ENSMALG00000008658	edc3	100	69.822	Monopterus_albus
ENSTGUG00000004007	EDC3	100	87.598	MGP_CAROLIEiJ_G0032280	Edc3	100	96.923	Mus_caroli
ENSTGUG00000004007	EDC3	100	87.598	ENSMUSG00000038957	Edc3	100	96.923	Mus_musculus
ENSTGUG00000004007	EDC3	100	87.795	MGP_PahariEiJ_G0015146	Edc3	100	96.923	Mus_pahari
ENSTGUG00000004007	EDC3	100	87.795	MGP_SPRETEiJ_G0033420	Edc3	100	96.923	Mus_spretus
ENSTGUG00000004007	EDC3	100	87.992	ENSMPUG00000017293	EDC3	100	87.992	Mustela_putorius_furo
ENSTGUG00000004007	EDC3	100	87.059	ENSMLUG00000016382	EDC3	100	87.059	Myotis_lucifugus
ENSTGUG00000004007	EDC3	100	88.189	ENSNGAG00000010923	Edc3	100	88.189	Nannospalax_galili
ENSTGUG00000004007	EDC3	100	68.639	ENSNBRG00000002434	edc3	100	68.639	Neolamprologus_brichardi
ENSTGUG00000004007	EDC3	99	60.392	ENSNBRG00000007881	EDC3	99	60.392	Neolamprologus_brichardi
ENSTGUG00000004007	EDC3	100	78.740	ENSNLEG00000014577	EDC3	100	78.740	Nomascus_leucogenys
ENSTGUG00000004007	EDC3	100	90.119	ENSMEUG00000009077	EDC3	100	90.119	Notamacropus_eugenii
ENSTGUG00000004007	EDC3	79	98.148	ENSOPRG00000009540	-	79	98.148	Ochotona_princeps
ENSTGUG00000004007	EDC3	100	68.836	ENSONIG00000008434	edc3	100	68.836	Oreochromis_niloticus
ENSTGUG00000004007	EDC3	99	60.155	ENSONIG00000002932	-	99	60.155	Oreochromis_niloticus
ENSTGUG00000004007	EDC3	78	87.626	ENSOCUG00000017740	EDC3	86	87.626	Oryctolagus_cuniculus
ENSTGUG00000004007	EDC3	100	68.442	ENSORLG00000004883	edc3	100	68.442	Oryzias_latipes
ENSTGUG00000004007	EDC3	99	56.693	ENSORLG00000014399	-	98	56.693	Oryzias_latipes
ENSTGUG00000004007	EDC3	100	67.850	ENSORLG00020012262	edc3	100	67.850	Oryzias_latipes_hni
ENSTGUG00000004007	EDC3	99	56.693	ENSORLG00020019446	-	99	56.693	Oryzias_latipes_hni
ENSTGUG00000004007	EDC3	99	56.496	ENSORLG00015017635	-	95	56.496	Oryzias_latipes_hsok
ENSTGUG00000004007	EDC3	100	68.047	ENSORLG00015005634	edc3	100	68.047	Oryzias_latipes_hsok
ENSTGUG00000004007	EDC3	100	69.822	ENSOMEG00000014026	edc3	100	69.822	Oryzias_melastigma
ENSTGUG00000004007	EDC3	99	56.890	ENSOMEG00000017354	EDC3	99	56.890	Oryzias_melastigma
ENSTGUG00000004007	EDC3	100	87.598	ENSOGAG00000014441	EDC3	100	88.189	Otolemur_garnettii
ENSTGUG00000004007	EDC3	100	87.819	ENSOARG00000003476	EDC3	100	88.212	Ovis_aries
ENSTGUG00000004007	EDC3	100	88.189	ENSPPAG00000040143	EDC3	100	88.189	Pan_paniscus
ENSTGUG00000004007	EDC3	100	87.402	ENSPPRG00000006257	EDC3	100	87.402	Panthera_pardus
ENSTGUG00000004007	EDC3	100	87.402	ENSPTIG00000017424	EDC3	100	87.402	Panthera_tigris_altaica
ENSTGUG00000004007	EDC3	100	88.189	ENSPTRG00000007279	EDC3	100	88.189	Pan_troglodytes
ENSTGUG00000004007	EDC3	100	88.780	ENSPANG00000015997	EDC3	100	88.780	Papio_anubis
ENSTGUG00000004007	EDC3	99	66.732	ENSPKIG00000019810	EDC3	99	66.732	Paramormyrops_kingsleyae
ENSTGUG00000004007	EDC3	100	67.515	ENSPKIG00000004416	edc3	100	68.689	Paramormyrops_kingsleyae
ENSTGUG00000004007	EDC3	100	85.630	ENSPSIG00000008474	EDC3	100	85.630	Pelodiscus_sinensis
ENSTGUG00000004007	EDC3	100	67.976	ENSPMGG00000007223	edc3	100	67.976	Periophthalmus_magnuspinnatus
ENSTGUG00000004007	EDC3	100	88.583	ENSPEMG00000015260	Edc3	100	88.583	Peromyscus_maniculatus_bairdii
ENSTGUG00000004007	EDC3	100	89.328	ENSPCIG00000006276	EDC3	70	89.328	Phascolarctos_cinereus
ENSTGUG00000004007	EDC3	100	69.034	ENSPFOG00000012204	edc3	100	69.034	Poecilia_formosa
ENSTGUG00000004007	EDC3	100	69.034	ENSPLAG00000014420	edc3	100	69.034	Poecilia_latipinna
ENSTGUG00000004007	EDC3	100	69.034	ENSPMEG00000023289	edc3	100	69.034	Poecilia_mexicana
ENSTGUG00000004007	EDC3	100	69.428	ENSPREG00000016022	edc3	100	69.428	Poecilia_reticulata
ENSTGUG00000004007	EDC3	100	87.008	ENSPPYG00000006642	EDC3	100	87.008	Pongo_abelii
ENSTGUG00000004007	EDC3	88	98.148	ENSPCAG00000002802	EDC3	88	98.148	Procavia_capensis
ENSTGUG00000004007	EDC3	100	88.189	ENSPCOG00000013364	EDC3	100	88.189	Propithecus_coquereli
ENSTGUG00000004007	EDC3	100	87.008	ENSPVAG00000014733	EDC3	100	87.008	Pteropus_vampyrus
ENSTGUG00000004007	EDC3	99	60.196	ENSPNYG00000009669	EDC3	99	60.196	Pundamilia_nyererei
ENSTGUG00000004007	EDC3	100	68.639	ENSPNYG00000021797	edc3	100	68.639	Pundamilia_nyererei
ENSTGUG00000004007	EDC3	100	69.767	ENSPNAG00000019657	edc3	100	69.767	Pygocentrus_nattereri
ENSTGUG00000004007	EDC3	99	87.723	ENSRNOG00000019579	Edc3	99	88.317	Rattus_norvegicus
ENSTGUG00000004007	EDC3	100	88.583	ENSRBIG00000019488	EDC3	100	88.583	Rhinopithecus_bieti
ENSTGUG00000004007	EDC3	100	88.583	ENSRROG00000034959	EDC3	100	88.583	Rhinopithecus_roxellana
ENSTGUG00000004007	EDC3	100	88.780	ENSSBOG00000004896	EDC3	100	88.780	Saimiri_boliviensis_boliviensis
ENSTGUG00000004007	EDC3	96	90.349	ENSSHAG00000015075	EDC3	95	90.349	Sarcophilus_harrisii
ENSTGUG00000004007	EDC3	99	72.157	ENSSFOG00015016939	edc3	99	72.157	Scleropages_formosus
ENSTGUG00000004007	EDC3	100	64.844	ENSSFOG00015002439	edc3	100	64.844	Scleropages_formosus
ENSTGUG00000004007	EDC3	99	57.143	ENSSMAG00000010176	-	99	57.143	Scophthalmus_maximus
ENSTGUG00000004007	EDC3	100	69.625	ENSSMAG00000010695	edc3	100	69.822	Scophthalmus_maximus
ENSTGUG00000004007	EDC3	99	59.690	ENSSDUG00000007671	EDC3	99	59.690	Seriola_dumerili
ENSTGUG00000004007	EDC3	100	70.217	ENSSDUG00000021844	edc3	100	71.006	Seriola_dumerili
ENSTGUG00000004007	EDC3	100	70.217	ENSSLDG00000022046	edc3	100	71.006	Seriola_lalandi_dorsalis
ENSTGUG00000004007	EDC3	80	88.710	ENSSARG00000003907	EDC3	80	88.710	Sorex_araneus
ENSTGUG00000004007	EDC3	100	92.126	ENSSPUG00000008232	EDC3	100	92.126	Sphenodon_punctatus
ENSTGUG00000004007	EDC3	99	57.843	ENSSPAG00000020327	EDC3	99	58.431	Stegastes_partitus
ENSTGUG00000004007	EDC3	100	70.217	ENSSPAG00000010009	edc3	100	70.217	Stegastes_partitus
ENSTGUG00000004007	EDC3	100	87.992	ENSSSCG00000001903	EDC3	100	87.992	Sus_scrofa
ENSTGUG00000004007	EDC3	100	70.414	ENSTRUG00000017078	edc3	100	70.414	Takifugu_rubripes
ENSTGUG00000004007	EDC3	100	70.138	ENSTNIG00000016047	edc3	100	70.138	Tetraodon_nigroviridis
ENSTGUG00000004007	EDC3	100	87.771	ENSTTRG00000007990	EDC3	100	87.771	Tursiops_truncatus
ENSTGUG00000004007	EDC3	100	87.598	ENSUAMG00000026710	-	100	87.598	Ursus_americanus
ENSTGUG00000004007	EDC3	100	87.598	ENSUMAG00000005006	EDC3	96	87.598	Ursus_maritimus
ENSTGUG00000004007	EDC3	79	85.185	ENSVPAG00000003499	-	79	85.185	Vicugna_pacos
ENSTGUG00000004007	EDC3	100	87.795	ENSVVUG00000018601	EDC3	100	87.795	Vulpes_vulpes
ENSTGUG00000004007	EDC3	68	82.184	ENSXETG00000010622	edc3	99	83.333	Xenopus_tropicalis
ENSTGUG00000004007	EDC3	100	69.034	ENSXMAG00000007377	edc3	100	69.034	Xiphophorus_maculatus