EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000004730 (Gene tree)
Gene ID: 100229832
Gene Symbol: -
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 4239 bases
Position: chr1A:23745063-23749301
Accession: 100229832
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000004859	LSM	PF01423.22	3.8e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000004908	-	456	-	ENSTGUP00000004859	96 (aa)	XP_004177250	H0Z2R7

Gene Model

Click here to download ENSTGUG00000004730's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03018	RNA degradation	KEGG
tgu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000004730's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000004730	-	100	98.958	ENSTGUG00000016823	-	100	98.958
ENSTGUG00000004730	-	73	36.842	ENSTGUG00000000067	LSM7	73	36.842
ENSTGUG00000004730	-	92	34.091	ENSTGUG00000004793	LSM1	65	34.091
ENSTGUG00000004730	-	63	33.333	ENSTGUG00000004149	SNRPG	75	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000004730	-	100	97.917	ENSG00000128534	LSM8	100	98.667	Homo_sapiens
ENSTGUG00000004730	-	100	93.750	ENSAPOG00000008649	lsm8	100	93.750	Acanthochromis_polyacanthus
ENSTGUG00000004730	-	100	97.917	ENSAMEG00000001162	LSM8	100	97.917	Ailuropoda_melanoleuca
ENSTGUG00000004730	-	78	98.667	ENSACIG00000014694	lsm8	100	98.667	Amphilophus_citrinellus
ENSTGUG00000004730	-	100	93.750	ENSAOCG00000013926	lsm8	100	93.750	Amphiprion_ocellaris
ENSTGUG00000004730	-	100	93.750	ENSAPEG00000023502	lsm8	100	93.750	Amphiprion_percula
ENSTGUG00000004730	-	78	98.667	ENSATEG00000023432	lsm8	100	98.667	Anabas_testudineus
ENSTGUG00000004730	-	95	92.553	ENSAPLG00000005115	LSM8	95	92.553	Anas_platyrhynchos
ENSTGUG00000004730	-	100	97.917	ENSANAG00000027771	LSM8	100	97.917	Aotus_nancymaae
ENSTGUG00000004730	-	100	93.750	ENSACLG00000011253	lsm8	100	93.750	Astatotilapia_calliptera
ENSTGUG00000004730	-	100	95.833	ENSAMXG00000042902	lsm8	100	95.833	Astyanax_mexicanus
ENSTGUG00000004730	-	100	97.917	ENSBTAG00000012649	LSM8	100	97.917	Bos_taurus
ENSTGUG00000004730	-	98	58.511	WBGene00003082	lsm-8	96	58.511	Caenorhabditis_elegans
ENSTGUG00000004730	-	100	97.917	ENSCJAG00000046406	LSM8	100	97.917	Callithrix_jacchus
ENSTGUG00000004730	-	98	98.936	ENSCAFG00000016459	LSM8	95	98.936	Canis_familiaris
ENSTGUG00000004730	-	100	97.917	ENSCAFG00020007643	-	100	97.917	Canis_lupus_dingo
ENSTGUG00000004730	-	89	97.647	ENSCAFG00020012800	-	66	97.647	Canis_lupus_dingo
ENSTGUG00000004730	-	89	98.824	ENSCHIG00000014201	LSM8	90	98.824	Capra_hircus
ENSTGUG00000004730	-	100	97.917	ENSTSYG00000032434	LSM8	100	97.917	Carlito_syrichta
ENSTGUG00000004730	-	77	97.297	ENSCAPG00000008253	LSM8	100	97.297	Cavia_aperea
ENSTGUG00000004730	-	100	97.917	ENSCPOG00000035673	LSM8	100	97.917	Cavia_porcellus
ENSTGUG00000004730	-	100	97.917	ENSCCAG00000021329	LSM8	100	97.917	Cebus_capucinus
ENSTGUG00000004730	-	100	97.917	ENSCATG00000045302	LSM8	100	97.917	Cercocebus_atys
ENSTGUG00000004730	-	100	97.917	ENSCLAG00000003726	LSM8	100	97.917	Chinchilla_lanigera
ENSTGUG00000004730	-	100	97.917	ENSCSAG00000010802	-	100	97.917	Chlorocebus_sabaeus
ENSTGUG00000004730	-	100	93.750	ENSCSAG00000019007	-	100	93.750	Chlorocebus_sabaeus
ENSTGUG00000004730	-	89	98.824	ENSCPBG00000008154	LSM8	87	98.824	Chrysemys_picta_bellii
ENSTGUG00000004730	-	100	75.000	ENSCING00000024877	-	100	75.000	Ciona_intestinalis
ENSTGUG00000004730	-	100	97.917	ENSCANG00000040728	LSM8	100	97.917	Colobus_angolensis_palliatus
ENSTGUG00000004730	-	100	97.917	ENSCGRG00001000450	Lsm8	100	97.917	Cricetulus_griseus_chok1gshd
ENSTGUG00000004730	-	89	98.824	ENSCGRG00000005587	Lsm8	100	98.824	Cricetulus_griseus_crigri
ENSTGUG00000004730	-	100	82.292	ENSCSEG00000004164	lsm8	100	82.292	Cynoglossus_semilaevis
ENSTGUG00000004730	-	100	92.708	ENSCVAG00000020547	lsm8	100	92.708	Cyprinodon_variegatus
ENSTGUG00000004730	-	100	92.708	ENSDARG00000091656	lsm8	100	92.708	Danio_rerio
ENSTGUG00000004730	-	100	97.917	ENSDNOG00000034613	LSM8	100	97.917	Dasypus_novemcinctus
ENSTGUG00000004730	-	100	97.917	ENSDORG00000027868	Lsm8	100	97.917	Dipodomys_ordii
ENSTGUG00000004730	-	98	70.213	FBgn0035271	CG2021	99	70.213	Drosophila_melanogaster
ENSTGUG00000004730	-	100	98.958	ENSETEG00000011594	LSM8	100	98.958	Echinops_telfairi
ENSTGUG00000004730	-	77	93.243	ENSEBUG00000012017	lsm8	100	93.243	Eptatretus_burgeri
ENSTGUG00000004730	-	100	97.917	ENSEASG00005008932	LSM8	62	97.917	Equus_asinus_asinus
ENSTGUG00000004730	-	89	98.824	ENSECAG00000024025	LSM8	77	98.824	Equus_caballus
ENSTGUG00000004730	-	100	92.708	ENSELUG00000010138	lsm8	100	92.708	Esox_lucius
ENSTGUG00000004730	-	83	75.000	ENSFCAG00000044794	-	81	75.000	Felis_catus
ENSTGUG00000004730	-	100	97.917	ENSFCAG00000036620	-	100	97.917	Felis_catus
ENSTGUG00000004730	-	100	98.958	ENSFALG00000010023	LSM8	100	98.958	Ficedula_albicollis
ENSTGUG00000004730	-	100	97.917	ENSFDAG00000019530	LSM8	100	97.917	Fukomys_damarensis
ENSTGUG00000004730	-	100	93.750	ENSFHEG00000013729	lsm8	100	93.750	Fundulus_heteroclitus
ENSTGUG00000004730	-	100	98.958	ENSGALG00000009110	LSM8	100	98.958	Gallus_gallus
ENSTGUG00000004730	-	100	92.708	ENSGAFG00000001135	lsm8	100	92.708	Gambusia_affinis
ENSTGUG00000004730	-	100	97.917	ENSGAGG00000017366	LSM8	100	97.917	Gopherus_agassizii
ENSTGUG00000004730	-	100	97.917	ENSGGOG00000041883	LSM8	100	97.917	Gorilla_gorilla
ENSTGUG00000004730	-	100	93.750	ENSHBUG00000003646	lsm8	100	93.750	Haplochromis_burtoni
ENSTGUG00000004730	-	100	91.667	ENSHGLG00000019782	-	100	91.667	Heterocephalus_glaber_female
ENSTGUG00000004730	-	71	98.529	ENSHGLG00000001988	-	99	98.529	Heterocephalus_glaber_female
ENSTGUG00000004730	-	98	96.809	ENSHGLG00100003934	-	94	96.809	Heterocephalus_glaber_male
ENSTGUG00000004730	-	100	93.750	ENSHGLG00100012166	-	100	93.750	Heterocephalus_glaber_male
ENSTGUG00000004730	-	100	92.708	ENSHCOG00000005037	lsm8	100	92.708	Hippocampus_comes
ENSTGUG00000004730	-	100	95.833	ENSIPUG00000019811	NAA38	100	95.833	Ictalurus_punctatus
ENSTGUG00000004730	-	92	86.364	ENSSTOG00000034801	-	81	86.364	Ictidomys_tridecemlineatus
ENSTGUG00000004730	-	100	97.917	ENSSTOG00000009039	LSM8	100	97.917	Ictidomys_tridecemlineatus
ENSTGUG00000004730	-	100	97.917	ENSJJAG00000009031	Lsm8	99	97.917	Jaculus_jaculus
ENSTGUG00000004730	-	100	93.750	ENSKMAG00000018983	lsm8	100	93.750	Kryptolebias_marmoratus
ENSTGUG00000004730	-	100	94.792	ENSLACG00000010231	LSM8	100	94.792	Latimeria_chalumnae
ENSTGUG00000004730	-	100	94.792	ENSLOCG00000015580	lsm8	100	94.792	Lepisosteus_oculatus
ENSTGUG00000004730	-	100	96.907	ENSLAFG00000011242	LSM8	100	96.907	Loxodonta_africana
ENSTGUG00000004730	-	100	93.750	ENSMFAG00000013044	-	100	93.750	Macaca_fascicularis
ENSTGUG00000004730	-	100	97.917	ENSMFAG00000035798	LSM8	100	97.917	Macaca_fascicularis
ENSTGUG00000004730	-	100	97.917	ENSMMUG00000046401	LSM8	100	95.946	Macaca_mulatta
ENSTGUG00000004730	-	78	94.667	ENSMNEG00000011141	-	100	94.667	Macaca_nemestrina
ENSTGUG00000004730	-	100	97.917	ENSMNEG00000036764	-	100	97.917	Macaca_nemestrina
ENSTGUG00000004730	-	100	82.292	ENSMLEG00000039324	-	100	82.292	Mandrillus_leucophaeus
ENSTGUG00000004730	-	100	97.917	ENSMLEG00000035828	-	100	97.917	Mandrillus_leucophaeus
ENSTGUG00000004730	-	78	98.667	ENSMAMG00000018839	lsm8	100	98.667	Mastacembelus_armatus
ENSTGUG00000004730	-	100	93.750	ENSMZEG00005019138	lsm8	100	93.750	Maylandia_zebra
ENSTGUG00000004730	-	100	98.958	ENSMGAG00000008808	LSM8	100	98.958	Meleagris_gallopavo
ENSTGUG00000004730	-	75	91.667	ENSMAUG00000020287	-	100	89.189	Mesocricetus_auratus
ENSTGUG00000004730	-	100	78.125	ENSMAUG00000015356	-	100	78.125	Mesocricetus_auratus
ENSTGUG00000004730	-	100	91.667	ENSMAUG00000015721	-	100	91.667	Mesocricetus_auratus
ENSTGUG00000004730	-	100	97.917	ENSMICG00000042730	LSM8	100	97.917	Microcebus_murinus
ENSTGUG00000004730	-	100	97.917	ENSMOCG00000001688	Lsm8	100	97.917	Microtus_ochrogaster
ENSTGUG00000004730	-	78	98.667	ENSMMOG00000006046	lsm8	100	98.667	Mola_mola
ENSTGUG00000004730	-	76	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSTGUG00000004730	-	100	94.792	ENSMALG00000000405	lsm8	100	94.792	Monopterus_albus
ENSTGUG00000004730	-	100	97.917	MGP_CAROLIEiJ_G0028125	-	100	97.917	Mus_caroli
ENSTGUG00000004730	-	100	97.917	ENSMUSG00000044155	Lsm8	100	97.917	Mus_musculus
ENSTGUG00000004730	-	100	97.917	MGP_PahariEiJ_G0021881	Lsm8	100	98.667	Mus_pahari
ENSTGUG00000004730	-	100	97.917	MGP_SPRETEiJ_G0029125	-	100	97.917	Mus_spretus
ENSTGUG00000004730	-	100	96.875	ENSMLUG00000027762	-	100	96.875	Myotis_lucifugus
ENSTGUG00000004730	-	100	97.917	ENSMLUG00000006837	-	100	97.917	Myotis_lucifugus
ENSTGUG00000004730	-	100	97.917	ENSNGAG00000016554	Lsm8	100	97.917	Nannospalax_galili
ENSTGUG00000004730	-	100	93.750	ENSNBRG00000014441	lsm8	100	93.750	Neolamprologus_brichardi
ENSTGUG00000004730	-	100	97.917	ENSNLEG00000011768	LSM8	100	97.917	Nomascus_leucogenys
ENSTGUG00000004730	-	100	86.458	ENSMEUG00000007801	LSM8	100	86.458	Notamacropus_eugenii
ENSTGUG00000004730	-	89	98.824	ENSOPRG00000014809	LSM8	100	98.824	Ochotona_princeps
ENSTGUG00000004730	-	90	81.395	ENSODEG00000020290	-	100	81.395	Octodon_degus
ENSTGUG00000004730	-	100	97.917	ENSODEG00000000418	-	100	97.917	Octodon_degus
ENSTGUG00000004730	-	100	96.875	ENSOANG00000014536	LSM8	100	96.875	Ornithorhynchus_anatinus
ENSTGUG00000004730	-	100	96.907	ENSOCUG00000017359	LSM8	100	96.907	Oryctolagus_cuniculus
ENSTGUG00000004730	-	100	83.333	ENSORLG00000017432	lsm8	100	83.333	Oryzias_latipes
ENSTGUG00000004730	-	100	83.333	ENSORLG00020004376	lsm8	100	83.333	Oryzias_latipes_hni
ENSTGUG00000004730	-	100	93.750	ENSORLG00015003757	lsm8	100	93.750	Oryzias_latipes_hsok
ENSTGUG00000004730	-	100	81.250	ENSOMEG00000022509	lsm8	100	82.292	Oryzias_melastigma
ENSTGUG00000004730	-	100	97.917	ENSOGAG00000013377	LSM8	100	97.917	Otolemur_garnettii
ENSTGUG00000004730	-	100	97.917	ENSOARG00000017974	LSM8	100	97.917	Ovis_aries
ENSTGUG00000004730	-	78	98.667	ENSPPAG00000043228	-	100	98.667	Pan_paniscus
ENSTGUG00000004730	-	100	97.917	ENSPPRG00000006444	LSM8	100	97.917	Panthera_pardus
ENSTGUG00000004730	-	100	97.917	ENSPTIG00000004722	LSM8	100	97.917	Panthera_tigris_altaica
ENSTGUG00000004730	-	78	98.667	ENSPTRG00000046596	-	100	98.667	Pan_troglodytes
ENSTGUG00000004730	-	100	91.667	ENSPANG00000019395	-	100	91.667	Papio_anubis
ENSTGUG00000004730	-	100	97.917	ENSPANG00000035470	-	100	97.917	Papio_anubis
ENSTGUG00000004730	-	89	98.824	ENSPKIG00000006092	lsm8	86	98.824	Paramormyrops_kingsleyae
ENSTGUG00000004730	-	78	98.667	ENSPSIG00000017054	LSM8	100	98.667	Pelodiscus_sinensis
ENSTGUG00000004730	-	78	98.667	ENSPMGG00000016442	lsm8	100	98.667	Periophthalmus_magnuspinnatus
ENSTGUG00000004730	-	77	95.946	ENSPEMG00000009153	Lsm8	100	95.946	Peromyscus_maniculatus_bairdii
ENSTGUG00000004730	-	97	98.925	ENSPCIG00000021467	LSM8	98	98.925	Phascolarctos_cinereus
ENSTGUG00000004730	-	100	92.708	ENSPFOG00000012340	lsm8	100	92.708	Poecilia_formosa
ENSTGUG00000004730	-	100	86.458	ENSPLAG00000000516	lsm8	100	86.458	Poecilia_latipinna
ENSTGUG00000004730	-	100	92.708	ENSPMEG00000022567	lsm8	100	92.708	Poecilia_mexicana
ENSTGUG00000004730	-	76	86.250	ENSPREG00000005527	lsm8	72	86.250	Poecilia_reticulata
ENSTGUG00000004730	-	100	97.917	ENSPPYG00000017942	LSM8	100	97.917	Pongo_abelii
ENSTGUG00000004730	-	100	97.917	ENSPCOG00000003309	-	100	97.917	Propithecus_coquereli
ENSTGUG00000004730	-	97	77.419	ENSPCOG00000017982	-	97	77.419	Propithecus_coquereli
ENSTGUG00000004730	-	89	97.647	ENSPVAG00000000990	LSM8	100	97.647	Pteropus_vampyrus
ENSTGUG00000004730	-	100	93.750	ENSPNYG00000011448	lsm8	100	93.750	Pundamilia_nyererei
ENSTGUG00000004730	-	100	95.833	ENSPNAG00000010252	lsm8	100	95.833	Pygocentrus_nattereri
ENSTGUG00000004730	-	100	97.917	ENSRNOG00000058677	Lsm8	100	97.917	Rattus_norvegicus
ENSTGUG00000004730	-	100	97.917	ENSRBIG00000032851	LSM8	100	97.917	Rhinopithecus_bieti
ENSTGUG00000004730	-	100	97.917	ENSRROG00000039618	LSM8	100	97.917	Rhinopithecus_roxellana
ENSTGUG00000004730	-	100	97.917	ENSSBOG00000023223	LSM8	100	97.917	Saimiri_boliviensis_boliviensis
ENSTGUG00000004730	-	100	97.917	ENSSHAG00000018435	-	100	97.917	Sarcophilus_harrisii
ENSTGUG00000004730	-	100	92.708	ENSSFOG00015004412	lsm8	100	92.708	Scleropages_formosus
ENSTGUG00000004730	-	78	96.000	ENSSMAG00000009458	lsm8	100	96.000	Scophthalmus_maximus
ENSTGUG00000004730	-	100	93.750	ENSSDUG00000014702	lsm8	100	93.750	Seriola_dumerili
ENSTGUG00000004730	-	78	98.667	ENSSLDG00000016870	lsm8	100	98.667	Seriola_lalandi_dorsalis
ENSTGUG00000004730	-	75	98.611	ENSSARG00000009628	-	100	98.611	Sorex_araneus
ENSTGUG00000004730	-	100	97.917	ENSSPUG00000017419	LSM8	100	97.917	Sphenodon_punctatus
ENSTGUG00000004730	-	100	93.750	ENSSPAG00000021422	lsm8	100	93.750	Stegastes_partitus
ENSTGUG00000004730	-	100	97.917	ENSSSCG00000021652	LSM8	100	97.917	Sus_scrofa
ENSTGUG00000004730	-	100	93.750	ENSTRUG00000025192	lsm8	100	93.750	Takifugu_rubripes
ENSTGUG00000004730	-	100	93.750	ENSTNIG00000002864	lsm8	100	93.750	Tetraodon_nigroviridis
ENSTGUG00000004730	-	100	97.917	ENSTTRG00000001023	LSM8	100	97.917	Tursiops_truncatus
ENSTGUG00000004730	-	92	95.455	ENSUAMG00000006943	-	92	95.455	Ursus_americanus
ENSTGUG00000004730	-	92	95.455	ENSUMAG00000003073	LSM8	94	95.455	Ursus_maritimus
ENSTGUG00000004730	-	100	97.917	ENSVPAG00000001530	LSM8	100	97.917	Vicugna_pacos
ENSTGUG00000004730	-	78	96.000	ENSVVUG00000013248	-	82	96.000	Vulpes_vulpes
ENSTGUG00000004730	-	93	97.753	ENSXETG00000021829	lsm8	92	97.753	Xenopus_tropicalis
ENSTGUG00000004730	-	100	90.625	ENSXCOG00000012938	lsm8	100	90.625	Xiphophorus_couchianus
ENSTGUG00000004730	-	100	92.708	ENSXMAG00000025919	lsm8	100	92.708	Xiphophorus_maculatus