EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000004793 (Gene tree)
Gene ID: 100190294
Gene Symbol: LSM1
Alias: -
Full Name: Taeniopygia guttata LSM1 homolog%2C mRNA degradation associated (LSM1)%2C mRNA.
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 1940 bases
Position: chr22:2804436-2806375
Accession: NM_001245375
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000004931	LSM	PF01423.22	1.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000004980	-	764	-	ENSTGUP00000004931	133 (aa)	-	B5FZU6

Gene Model

Click here to download ENSTGUG00000004793's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000004793's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000004793	LSM1	65	34.091	ENSTGUG00000004730	-	92	34.091
ENSTGUG00000004793	LSM1	65	32.955	ENSTGUG00000016823	-	92	32.955

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000004793	LSM1	100	94.737	ENSG00000175324	LSM1	100	94.737	Homo_sapiens
ENSTGUG00000004793	LSM1	100	84.962	ENSAPOG00000010833	lsm1	100	84.962	Acanthochromis_polyacanthus
ENSTGUG00000004793	LSM1	100	94.737	ENSAMEG00000011141	LSM1	100	94.737	Ailuropoda_melanoleuca
ENSTGUG00000004793	LSM1	58	93.506	ENSACIG00000019593	lsm1	64	93.506	Amphilophus_citrinellus
ENSTGUG00000004793	LSM1	100	84.962	ENSAOCG00000017096	lsm1	100	84.962	Amphiprion_ocellaris
ENSTGUG00000004793	LSM1	100	84.962	ENSAOCG00000017997	-	100	84.962	Amphiprion_ocellaris
ENSTGUG00000004793	LSM1	100	84.962	ENSAPEG00000011669	lsm1	100	84.962	Amphiprion_percula
ENSTGUG00000004793	LSM1	100	84.962	ENSATEG00000022266	lsm1	100	84.962	Anabas_testudineus
ENSTGUG00000004793	LSM1	100	94.737	ENSANAG00000027785	LSM1	100	94.737	Aotus_nancymaae
ENSTGUG00000004793	LSM1	100	84.962	ENSACLG00000011400	lsm1	100	84.962	Astatotilapia_calliptera
ENSTGUG00000004793	LSM1	100	87.970	ENSAMXG00000005441	lsm1	100	87.970	Astyanax_mexicanus
ENSTGUG00000004793	LSM1	100	93.985	ENSBTAG00000001612	LSM1	100	93.985	Bos_taurus
ENSTGUG00000004793	LSM1	87	51.695	WBGene00003076	lsm-1	90	51.695	Caenorhabditis_elegans
ENSTGUG00000004793	LSM1	100	93.985	ENSCJAG00000048015	LSM1	100	93.985	Callithrix_jacchus
ENSTGUG00000004793	LSM1	100	94.737	ENSCAFG00000006113	LSM1	100	94.737	Canis_familiaris
ENSTGUG00000004793	LSM1	100	94.737	ENSCAFG00020001822	LSM1	100	94.737	Canis_lupus_dingo
ENSTGUG00000004793	LSM1	100	94.737	ENSCHIG00000013194	LSM1	100	94.737	Capra_hircus
ENSTGUG00000004793	LSM1	100	94.737	ENSTSYG00000010394	LSM1	100	94.737	Carlito_syrichta
ENSTGUG00000004793	LSM1	100	94.737	ENSCPOG00000032671	LSM1	100	94.737	Cavia_porcellus
ENSTGUG00000004793	LSM1	100	94.737	ENSCCAG00000037171	LSM1	100	94.737	Cebus_capucinus
ENSTGUG00000004793	LSM1	100	94.737	ENSCATG00000020377	LSM1	100	94.737	Cercocebus_atys
ENSTGUG00000004793	LSM1	100	93.233	ENSCLAG00000001137	LSM1	100	93.233	Chinchilla_lanigera
ENSTGUG00000004793	LSM1	100	94.737	ENSCSAG00000015485	LSM1	100	94.737	Chlorocebus_sabaeus
ENSTGUG00000004793	LSM1	100	95.489	ENSCHOG00000006030	LSM1	100	95.489	Choloepus_hoffmanni
ENSTGUG00000004793	LSM1	95	92.126	ENSCPBG00000006569	LSM1	86	92.126	Chrysemys_picta_bellii
ENSTGUG00000004793	LSM1	98	68.939	ENSCING00000013536	-	100	68.939	Ciona_intestinalis
ENSTGUG00000004793	LSM1	100	94.737	ENSCANG00000019173	LSM1	100	94.737	Colobus_angolensis_palliatus
ENSTGUG00000004793	LSM1	80	78.378	ENSCGRG00001002259	-	97	78.378	Cricetulus_griseus_chok1gshd
ENSTGUG00000004793	LSM1	100	93.985	ENSCGRG00001024560	-	100	93.985	Cricetulus_griseus_chok1gshd
ENSTGUG00000004793	LSM1	100	93.985	ENSCGRG00000006554	-	100	93.985	Cricetulus_griseus_crigri
ENSTGUG00000004793	LSM1	80	78.378	ENSCGRG00000013603	-	97	78.378	Cricetulus_griseus_crigri
ENSTGUG00000004793	LSM1	100	85.714	ENSCSEG00000010570	lsm1	92	85.714	Cynoglossus_semilaevis
ENSTGUG00000004793	LSM1	100	84.962	ENSCSEG00000008319	lsm1	92	84.962	Cynoglossus_semilaevis
ENSTGUG00000004793	LSM1	100	84.211	ENSCVAG00000003871	lsm1	100	84.211	Cyprinodon_variegatus
ENSTGUG00000004793	LSM1	100	87.218	ENSDARG00000043177	lsm1	100	87.218	Danio_rerio
ENSTGUG00000004793	LSM1	100	88.722	ENSDNOG00000030989	-	100	88.722	Dasypus_novemcinctus
ENSTGUG00000004793	LSM1	100	93.985	ENSDNOG00000032911	-	100	93.985	Dasypus_novemcinctus
ENSTGUG00000004793	LSM1	89	74.790	ENSDNOG00000046620	-	100	74.790	Dasypus_novemcinctus
ENSTGUG00000004793	LSM1	100	94.737	ENSDNOG00000046387	-	100	94.737	Dasypus_novemcinctus
ENSTGUG00000004793	LSM1	100	94.737	ENSDORG00000028172	Lsm1	100	94.737	Dipodomys_ordii
ENSTGUG00000004793	LSM1	93	66.129	FBgn0261067	LSm1	91	66.129	Drosophila_melanogaster
ENSTGUG00000004793	LSM1	100	93.985	ENSEASG00005016677	LSM1	100	93.985	Equus_asinus_asinus
ENSTGUG00000004793	LSM1	100	93.985	ENSECAG00000010461	LSM1	100	93.985	Equus_caballus
ENSTGUG00000004793	LSM1	100	67.669	ENSEEUG00000015181	LSM1	100	67.669	Erinaceus_europaeus
ENSTGUG00000004793	LSM1	100	85.714	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
ENSTGUG00000004793	LSM1	100	81.203	ENSELUG00000023374	lsm1	100	81.203	Esox_lucius
ENSTGUG00000004793	LSM1	100	94.737	ENSFCAG00000039335	LSM1	100	94.737	Felis_catus
ENSTGUG00000004793	LSM1	89	98.305	ENSFALG00000006723	LSM1	100	98.305	Ficedula_albicollis
ENSTGUG00000004793	LSM1	100	94.737	ENSFDAG00000007658	LSM1	100	94.737	Fukomys_damarensis
ENSTGUG00000004793	LSM1	100	84.211	ENSFHEG00000009556	lsm1	100	84.211	Fundulus_heteroclitus
ENSTGUG00000004793	LSM1	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSTGUG00000004793	LSM1	100	96.992	ENSGALG00000003245	LSM1	100	96.992	Gallus_gallus
ENSTGUG00000004793	LSM1	100	84.211	ENSGAFG00000011355	lsm1	100	84.211	Gambusia_affinis
ENSTGUG00000004793	LSM1	100	84.962	ENSGACG00000011763	lsm1	98	84.962	Gasterosteus_aculeatus
ENSTGUG00000004793	LSM1	100	99.248	ENSGAGG00000024065	LSM1	100	99.248	Gopherus_agassizii
ENSTGUG00000004793	LSM1	100	94.737	ENSGGOG00000022658	LSM1	100	94.737	Gorilla_gorilla
ENSTGUG00000004793	LSM1	100	84.962	ENSHBUG00000010897	lsm1	100	84.962	Haplochromis_burtoni
ENSTGUG00000004793	LSM1	100	94.737	ENSHGLG00000005711	LSM1	100	94.737	Heterocephalus_glaber_female
ENSTGUG00000004793	LSM1	100	75.940	ENSHGLG00000017574	-	100	75.940	Heterocephalus_glaber_female
ENSTGUG00000004793	LSM1	100	94.737	ENSHGLG00100017660	LSM1	100	94.737	Heterocephalus_glaber_male
ENSTGUG00000004793	LSM1	100	75.940	ENSHGLG00100012152	-	100	75.940	Heterocephalus_glaber_male
ENSTGUG00000004793	LSM1	100	83.459	ENSHCOG00000017233	lsm1	100	83.459	Hippocampus_comes
ENSTGUG00000004793	LSM1	100	87.218	ENSIPUG00000002312	LSM1	100	87.218	Ictalurus_punctatus
ENSTGUG00000004793	LSM1	58	97.403	ENSSTOG00000026870	LSM1	94	97.403	Ictidomys_tridecemlineatus
ENSTGUG00000004793	LSM1	100	93.233	ENSJJAG00000014605	-	100	93.233	Jaculus_jaculus
ENSTGUG00000004793	LSM1	100	84.962	ENSKMAG00000003016	lsm1	100	84.962	Kryptolebias_marmoratus
ENSTGUG00000004793	LSM1	100	84.962	ENSLBEG00000022352	lsm1	100	84.962	Labrus_bergylta
ENSTGUG00000004793	LSM1	89	90.678	ENSLACG00000010947	LSM1	98	90.678	Latimeria_chalumnae
ENSTGUG00000004793	LSM1	100	92.481	ENSLOCG00000015149	lsm1	100	92.481	Lepisosteus_oculatus
ENSTGUG00000004793	LSM1	100	94.737	ENSLAFG00000003534	LSM1	100	94.737	Loxodonta_africana
ENSTGUG00000004793	LSM1	100	94.737	ENSMFAG00000032661	LSM1	100	94.737	Macaca_fascicularis
ENSTGUG00000004793	LSM1	100	94.737	ENSMLEG00000034535	LSM1	100	94.737	Mandrillus_leucophaeus
ENSTGUG00000004793	LSM1	100	84.962	ENSMAMG00000007464	lsm1	100	84.962	Mastacembelus_armatus
ENSTGUG00000004793	LSM1	100	84.962	ENSMZEG00005010321	lsm1	100	84.962	Maylandia_zebra
ENSTGUG00000004793	LSM1	100	96.992	ENSMGAG00000002125	LSM1	100	96.992	Meleagris_gallopavo
ENSTGUG00000004793	LSM1	100	93.985	ENSMICG00000030726	LSM1	100	93.985	Microcebus_murinus
ENSTGUG00000004793	LSM1	100	93.985	ENSMOCG00000022817	Lsm1	100	93.985	Microtus_ochrogaster
ENSTGUG00000004793	LSM1	100	85.714	ENSMMOG00000015466	lsm1	100	85.714	Mola_mola
ENSTGUG00000004793	LSM1	100	96.992	ENSMODG00000010732	-	100	96.992	Monodelphis_domestica
ENSTGUG00000004793	LSM1	58	93.506	ENSMALG00000001478	lsm1	82	93.506	Monopterus_albus
ENSTGUG00000004793	LSM1	100	92.481	MGP_CAROLIEiJ_G0030930	Lsm1	100	92.481	Mus_caroli
ENSTGUG00000004793	LSM1	100	92.481	ENSMUSG00000037296	Lsm1	100	92.481	Mus_musculus
ENSTGUG00000004793	LSM1	100	92.481	MGP_PahariEiJ_G0021400	Lsm1	100	92.481	Mus_pahari
ENSTGUG00000004793	LSM1	100	92.481	MGP_SPRETEiJ_G0032049	Lsm1	100	92.481	Mus_spretus
ENSTGUG00000004793	LSM1	100	95.489	ENSMPUG00000009883	LSM1	100	95.489	Mustela_putorius_furo
ENSTGUG00000004793	LSM1	100	94.737	ENSMLUG00000003734	LSM1	100	94.737	Myotis_lucifugus
ENSTGUG00000004793	LSM1	100	93.985	ENSNGAG00000003753	Lsm1	100	93.985	Nannospalax_galili
ENSTGUG00000004793	LSM1	58	93.506	ENSNBRG00000017370	lsm1	66	93.506	Neolamprologus_brichardi
ENSTGUG00000004793	LSM1	100	94.737	ENSNLEG00000029390	LSM1	100	94.737	Nomascus_leucogenys
ENSTGUG00000004793	LSM1	100	96.992	ENSMEUG00000014077	LSM1	100	96.992	Notamacropus_eugenii
ENSTGUG00000004793	LSM1	88	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSTGUG00000004793	LSM1	100	94.737	ENSODEG00000004834	LSM1	100	94.737	Octodon_degus
ENSTGUG00000004793	LSM1	100	84.962	ENSONIG00000010782	lsm1	100	84.962	Oreochromis_niloticus
ENSTGUG00000004793	LSM1	100	96.241	ENSOANG00000003256	LSM1	100	96.241	Ornithorhynchus_anatinus
ENSTGUG00000004793	LSM1	100	94.737	ENSOCUG00000015399	LSM1	100	94.737	Oryctolagus_cuniculus
ENSTGUG00000004793	LSM1	100	86.466	ENSORLG00000030288	lsm1	100	86.466	Oryzias_latipes
ENSTGUG00000004793	LSM1	100	84.962	ENSORLG00020006213	-	86	84.962	Oryzias_latipes_hni
ENSTGUG00000004793	LSM1	100	86.466	ENSORLG00020003941	lsm1	100	86.466	Oryzias_latipes_hni
ENSTGUG00000004793	LSM1	100	86.466	ENSORLG00015018350	lsm1	100	86.466	Oryzias_latipes_hsok
ENSTGUG00000004793	LSM1	100	86.466	ENSOMEG00000012454	lsm1	100	86.466	Oryzias_melastigma
ENSTGUG00000004793	LSM1	100	94.737	ENSOGAG00000015161	LSM1	100	94.737	Otolemur_garnettii
ENSTGUG00000004793	LSM1	100	94.737	ENSOARG00000001317	LSM1	100	94.737	Ovis_aries
ENSTGUG00000004793	LSM1	100	94.737	ENSPPAG00000032279	LSM1	100	94.737	Pan_paniscus
ENSTGUG00000004793	LSM1	100	94.737	ENSPPRG00000014172	-	100	94.737	Panthera_pardus
ENSTGUG00000004793	LSM1	100	94.737	ENSPTIG00000010289	LSM1	100	94.737	Panthera_tigris_altaica
ENSTGUG00000004793	LSM1	100	94.737	ENSPTRG00000020169	LSM1	100	94.737	Pan_troglodytes
ENSTGUG00000004793	LSM1	100	94.737	ENSPANG00000008814	LSM1	100	94.737	Papio_anubis
ENSTGUG00000004793	LSM1	100	89.474	ENSPKIG00000001839	lsm1	100	89.474	Paramormyrops_kingsleyae
ENSTGUG00000004793	LSM1	100	83.459	ENSPKIG00000019409	LSM1	99	83.459	Paramormyrops_kingsleyae
ENSTGUG00000004793	LSM1	98	92.308	ENSPSIG00000012563	LSM1	99	92.308	Pelodiscus_sinensis
ENSTGUG00000004793	LSM1	58	93.506	ENSPMGG00000022999	lsm1	73	93.506	Periophthalmus_magnuspinnatus
ENSTGUG00000004793	LSM1	85	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSTGUG00000004793	LSM1	100	96.992	ENSPCIG00000008880	LSM1	100	96.992	Phascolarctos_cinereus
ENSTGUG00000004793	LSM1	100	84.211	ENSPFOG00000016029	lsm1	100	84.211	Poecilia_formosa
ENSTGUG00000004793	LSM1	100	84.211	ENSPLAG00000007879	lsm1	100	84.211	Poecilia_latipinna
ENSTGUG00000004793	LSM1	100	84.211	ENSPMEG00000023550	lsm1	100	84.211	Poecilia_mexicana
ENSTGUG00000004793	LSM1	100	84.211	ENSPREG00000009574	lsm1	100	84.211	Poecilia_reticulata
ENSTGUG00000004793	LSM1	100	94.737	ENSPPYG00000018521	LSM1	100	94.737	Pongo_abelii
ENSTGUG00000004793	LSM1	100	94.737	ENSPCOG00000020901	-	100	94.737	Propithecus_coquereli
ENSTGUG00000004793	LSM1	100	94.737	ENSPVAG00000006016	LSM1	100	94.737	Pteropus_vampyrus
ENSTGUG00000004793	LSM1	100	84.962	ENSPNYG00000018067	lsm1	100	84.962	Pundamilia_nyererei
ENSTGUG00000004793	LSM1	100	87.218	ENSPNAG00000013707	lsm1	100	87.218	Pygocentrus_nattereri
ENSTGUG00000004793	LSM1	100	93.233	ENSRNOG00000015375	Lsm1	100	93.233	Rattus_norvegicus
ENSTGUG00000004793	LSM1	100	94.737	ENSRBIG00000027449	LSM1	100	94.737	Rhinopithecus_bieti
ENSTGUG00000004793	LSM1	100	94.737	ENSRROG00000036074	LSM1	100	94.737	Rhinopithecus_roxellana
ENSTGUG00000004793	LSM1	83	45.299	YJL124C	LSM1	67	45.299	Saccharomyces_cerevisiae
ENSTGUG00000004793	LSM1	100	96.992	ENSSHAG00000017260	LSM1	100	96.992	Sarcophilus_harrisii
ENSTGUG00000004793	LSM1	100	89.474	ENSSFOG00015019528	lsm1	100	89.474	Scleropages_formosus
ENSTGUG00000004793	LSM1	100	84.962	ENSSMAG00000004930	lsm1	100	84.962	Scophthalmus_maximus
ENSTGUG00000004793	LSM1	100	86.466	ENSSDUG00000021823	lsm1	100	86.466	Seriola_dumerili
ENSTGUG00000004793	LSM1	100	86.466	ENSSLDG00000012154	lsm1	100	86.466	Seriola_lalandi_dorsalis
ENSTGUG00000004793	LSM1	100	99.248	ENSSPUG00000014878	LSM1	100	99.248	Sphenodon_punctatus
ENSTGUG00000004793	LSM1	100	84.211	ENSSPAG00000020548	lsm1	100	84.211	Stegastes_partitus
ENSTGUG00000004793	LSM1	100	94.737	ENSSSCG00000039058	LSM1	100	94.737	Sus_scrofa
ENSTGUG00000004793	LSM1	100	87.218	ENSTRUG00000025239	lsm1	100	87.218	Takifugu_rubripes
ENSTGUG00000004793	LSM1	100	87.970	ENSTNIG00000004055	lsm1	100	87.970	Tetraodon_nigroviridis
ENSTGUG00000004793	LSM1	88	93.162	ENSTBEG00000015884	LSM1	100	93.162	Tupaia_belangeri
ENSTGUG00000004793	LSM1	100	94.737	ENSTTRG00000004482	LSM1	100	94.737	Tursiops_truncatus
ENSTGUG00000004793	LSM1	100	94.737	ENSUAMG00000004103	LSM1	100	94.737	Ursus_americanus
ENSTGUG00000004793	LSM1	100	94.737	ENSUMAG00000009132	LSM1	100	94.737	Ursus_maritimus
ENSTGUG00000004793	LSM1	58	96.104	ENSVPAG00000011593	LSM1	100	96.104	Vicugna_pacos
ENSTGUG00000004793	LSM1	100	94.737	ENSVVUG00000020191	LSM1	100	94.737	Vulpes_vulpes
ENSTGUG00000004793	LSM1	65	68.605	ENSVVUG00000014880	-	91	68.605	Vulpes_vulpes
ENSTGUG00000004793	LSM1	100	91.971	ENSXETG00000009004	lsm1	100	91.971	Xenopus_tropicalis
ENSTGUG00000004793	LSM1	100	84.962	ENSXCOG00000015631	lsm1	100	84.962	Xiphophorus_couchianus
ENSTGUG00000004793	LSM1	100	84.962	ENSXMAG00000026637	lsm1	100	84.962	Xiphophorus_maculatus