EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000004971 (Gene tree)
Gene ID: 100219669
Gene Symbol: PARN
Alias: DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Plus strand
Length: 45505 bases
Position: chr14:6693030-6738534
Accession: 8609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000005164	R3H	PF01424.22	6.3e-07	1	1
ENSTGUP00000005164	RNA_bind	PF08675.11	1.5e-33	1	1
ENSTGUP00000005164	CAF1	PF04857.20	3.5e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000005215	PARN-201	2304	-	ENSTGUP00000005164	638 (aa)	-	H0Z3M0

Gene Model

Click here to download ENSTGUG00000004971's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000004971's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000004971	PARN	55	30.362	ENSTGUG00000011418	PNLDC1	68	30.362

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000004971	PARN	99	83.438	ENSG00000140694	PARN	99	87.037	Homo_sapiens
ENSTGUG00000004971	PARN	99	81.546	ENSAMEG00000011208	PARN	99	81.546	Ailuropoda_melanoleuca
ENSTGUG00000004971	PARN	86	73.921	ENSACIG00000000619	parn	86	73.381	Amphilophus_citrinellus
ENSTGUG00000004971	PARN	97	70.275	ENSAOCG00000003465	parn	83	72.556	Amphiprion_ocellaris
ENSTGUG00000004971	PARN	74	77.801	ENSAPEG00000010661	parn	91	77.378	Amphiprion_percula
ENSTGUG00000004971	PARN	91	74.359	ENSATEG00000004661	parn	83	73.846	Anabas_testudineus
ENSTGUG00000004971	PARN	100	93.887	ENSAPLG00000013914	PARN	100	93.887	Anas_platyrhynchos
ENSTGUG00000004971	PARN	99	79.225	ENSACAG00000004973	PARN	99	79.535	Anolis_carolinensis
ENSTGUG00000004971	PARN	99	82.650	ENSANAG00000031516	PARN	99	87.037	Aotus_nancymaae
ENSTGUG00000004971	PARN	91	74.144	ENSACLG00000004742	parn	84	73.630	Astatotilapia_calliptera
ENSTGUG00000004971	PARN	99	67.287	ENSAMXG00000012390	parn	99	65.559	Astyanax_mexicanus
ENSTGUG00000004971	PARN	99	79.621	ENSBTAG00000018097	PARN	100	82.149	Bos_taurus
ENSTGUG00000004971	PARN	99	83.281	ENSCJAG00000015866	PARN	99	87.037	Callithrix_jacchus
ENSTGUG00000004971	PARN	99	82.306	ENSCAFG00000018795	PARN	99	82.306	Canis_familiaris
ENSTGUG00000004971	PARN	99	82.306	ENSCAFG00020024126	PARN	99	82.306	Canis_lupus_dingo
ENSTGUG00000004971	PARN	99	82.306	ENSCHIG00000018143	PARN	99	82.306	Capra_hircus
ENSTGUG00000004971	PARN	73	59.667	ENSCAPG00000007984	PARN	78	59.213	Cavia_aperea
ENSTGUG00000004971	PARN	99	81.487	ENSCPOG00000002263	PARN	99	81.487	Cavia_porcellus
ENSTGUG00000004971	PARN	99	82.808	ENSCCAG00000030367	PARN	99	87.037	Cebus_capucinus
ENSTGUG00000004971	PARN	91	90.574	ENSCATG00000041368	PARN	99	93.846	Cercocebus_atys
ENSTGUG00000004971	PARN	99	82.595	ENSCLAG00000015406	PARN	99	82.595	Chinchilla_lanigera
ENSTGUG00000004971	PARN	99	83.596	ENSCSAG00000008142	PARN	99	83.596	Chlorocebus_sabaeus
ENSTGUG00000004971	PARN	99	67.670	ENSCHOG00000007014	PARN	100	67.670	Choloepus_hoffmanni
ENSTGUG00000004971	PARN	88	90.553	ENSCPBG00000006609	PARN	97	90.706	Chrysemys_picta_bellii
ENSTGUG00000004971	PARN	79	43.893	ENSCING00000010142	-	99	43.893	Ciona_intestinalis
ENSTGUG00000004971	PARN	99	72.111	ENSCANG00000028849	-	99	87.037	Colobus_angolensis_palliatus
ENSTGUG00000004971	PARN	99	78.707	ENSCGRG00001012096	Parn	99	78.707	Cricetulus_griseus_chok1gshd
ENSTGUG00000004971	PARN	99	78.707	ENSCGRG00000004939	Parn	99	78.707	Cricetulus_griseus_crigri
ENSTGUG00000004971	PARN	99	66.928	ENSCSEG00000002064	parn	97	63.256	Cynoglossus_semilaevis
ENSTGUG00000004971	PARN	95	69.885	ENSCVAG00000014848	parn	85	69.983	Cyprinodon_variegatus
ENSTGUG00000004971	PARN	96	66.395	ENSDARG00000102634	parn	97	59.259	Danio_rerio
ENSTGUG00000004971	PARN	99	83.886	ENSDNOG00000000833	PARN	97	88.203	Dasypus_novemcinctus
ENSTGUG00000004971	PARN	65	83.721	ENSETEG00000014828	-	68	83.721	Echinops_telfairi
ENSTGUG00000004971	PARN	55	53.221	ENSEBUG00000007052	PARN	100	53.221	Eptatretus_burgeri
ENSTGUG00000004971	PARN	99	82.464	ENSEASG00005011400	PARN	99	82.205	Equus_asinus_asinus
ENSTGUG00000004971	PARN	99	82.148	ENSECAG00000017792	PARN	99	82.148	Equus_caballus
ENSTGUG00000004971	PARN	85	74.408	ENSEEUG00000010370	PARN	85	74.408	Erinaceus_europaeus
ENSTGUG00000004971	PARN	96	69.722	ENSELUG00000013139	parn	74	73.286	Esox_lucius
ENSTGUG00000004971	PARN	99	82.938	ENSFCAG00000044961	PARN	99	85.185	Felis_catus
ENSTGUG00000004971	PARN	99	97.464	ENSFALG00000003911	PARN	98	97.464	Ficedula_albicollis
ENSTGUG00000004971	PARN	99	81.329	ENSFDAG00000009234	PARN	99	81.329	Fukomys_damarensis
ENSTGUG00000004971	PARN	95	65.303	ENSFHEG00000013738	parn	83	81.132	Fundulus_heteroclitus
ENSTGUG00000004971	PARN	83	76.894	ENSGMOG00000003231	parn	96	76.705	Gadus_morhua
ENSTGUG00000004971	PARN	99	92.575	ENSGALG00000003091	PARN	99	92.575	Gallus_gallus
ENSTGUG00000004971	PARN	82	77.256	ENSGAFG00000011061	parn	83	72.061	Gambusia_affinis
ENSTGUG00000004971	PARN	99	67.863	ENSGACG00000019501	parn	99	67.395	Gasterosteus_aculeatus
ENSTGUG00000004971	PARN	55	83.853	ENSGAGG00000023281	PARN	90	84.419	Gopherus_agassizii
ENSTGUG00000004971	PARN	97	84.578	ENSGGOG00000025224	PARN	99	87.037	Gorilla_gorilla
ENSTGUG00000004971	PARN	91	74.144	ENSHBUG00000017906	parn	93	74.061	Haplochromis_burtoni
ENSTGUG00000004971	PARN	99	81.487	ENSHGLG00000010886	PARN	99	81.487	Heterocephalus_glaber_female
ENSTGUG00000004971	PARN	99	81.487	ENSHGLG00100014659	PARN	99	81.487	Heterocephalus_glaber_male
ENSTGUG00000004971	PARN	87	70.035	ENSHCOG00000008683	parn	97	69.681	Hippocampus_comes
ENSTGUG00000004971	PARN	99	57.121	ENSIPUG00000012401	parn	84	62.937	Ictalurus_punctatus
ENSTGUG00000004971	PARN	99	81.675	ENSSTOG00000007519	PARN	99	81.675	Ictidomys_tridecemlineatus
ENSTGUG00000004971	PARN	99	79.463	ENSJJAG00000023049	Parn	99	79.463	Jaculus_jaculus
ENSTGUG00000004971	PARN	95	72.131	ENSKMAG00000009462	parn	85	72.093	Kryptolebias_marmoratus
ENSTGUG00000004971	PARN	96	69.355	ENSLBEG00000009167	parn	88	72.366	Labrus_bergylta
ENSTGUG00000004971	PARN	79	79.010	ENSLACG00000004207	PARN	99	77.512	Latimeria_chalumnae
ENSTGUG00000004971	PARN	91	77.663	ENSLOCG00000000715	parn	84	77.491	Lepisosteus_oculatus
ENSTGUG00000004971	PARN	99	82.464	ENSLAFG00000015036	PARN	99	82.464	Loxodonta_africana
ENSTGUG00000004971	PARN	99	79.055	ENSMFAG00000044852	PARN	99	87.037	Macaca_fascicularis
ENSTGUG00000004971	PARN	99	83.596	ENSMMUG00000018849	PARN	99	87.037	Macaca_mulatta
ENSTGUG00000004971	PARN	99	83.596	ENSMNEG00000045108	PARN	99	87.037	Macaca_nemestrina
ENSTGUG00000004971	PARN	99	83.438	ENSMLEG00000031743	PARN	99	87.037	Mandrillus_leucophaeus
ENSTGUG00000004971	PARN	89	73.868	ENSMAMG00000006939	parn	82	73.345	Mastacembelus_armatus
ENSTGUG00000004971	PARN	91	74.144	ENSMZEG00005013590	parn	94	74.113	Maylandia_zebra
ENSTGUG00000004971	PARN	96	92.182	ENSMGAG00000001004	PARN	96	92.182	Meleagris_gallopavo
ENSTGUG00000004971	PARN	99	73.676	ENSMAUG00000008025	Parn	99	73.676	Mesocricetus_auratus
ENSTGUG00000004971	PARN	99	83.570	ENSMICG00000016053	PARN	99	83.307	Microcebus_murinus
ENSTGUG00000004971	PARN	77	85.481	ENSMOCG00000022211	Parn	99	85.481	Microtus_ochrogaster
ENSTGUG00000004971	PARN	82	75.614	ENSMMOG00000011333	parn	86	75.614	Mola_mola
ENSTGUG00000004971	PARN	77	91.242	ENSMODG00000004915	PARN	98	91.242	Monodelphis_domestica
ENSTGUG00000004971	PARN	86	75.812	ENSMALG00000019426	parn	93	75.271	Monopterus_albus
ENSTGUG00000004971	PARN	99	79.147	MGP_CAROLIEiJ_G0020466	Parn	99	79.147	Mus_caroli
ENSTGUG00000004971	PARN	99	78.673	ENSMUSG00000022685	Parn	99	78.673	Mus_musculus
ENSTGUG00000004971	PARN	50	30.462	ENSMUSG00000073460	Pnldc1	66	36.957	Mus_musculus
ENSTGUG00000004971	PARN	99	79.147	MGP_PahariEiJ_G0016172	Parn	99	79.147	Mus_pahari
ENSTGUG00000004971	PARN	99	78.673	MGP_SPRETEiJ_G0021361	Parn	99	78.673	Mus_spretus
ENSTGUG00000004971	PARN	99	82.148	ENSMPUG00000014464	PARN	99	82.148	Mustela_putorius_furo
ENSTGUG00000004971	PARN	76	87.526	ENSMLUG00000005414	PARN	99	87.526	Myotis_lucifugus
ENSTGUG00000004971	PARN	87	74.101	ENSNBRG00000006805	parn	94	73.921	Neolamprologus_brichardi
ENSTGUG00000004971	PARN	99	83.123	ENSNLEG00000010241	PARN	99	87.037	Nomascus_leucogenys
ENSTGUG00000004971	PARN	99	59.588	ENSMEUG00000008178	-	100	59.588	Notamacropus_eugenii
ENSTGUG00000004971	PARN	99	77.813	ENSOPRG00000012187	PARN	100	77.813	Ochotona_princeps
ENSTGUG00000004971	PARN	99	74.173	ENSODEG00000001617	PARN	99	74.173	Octodon_degus
ENSTGUG00000004971	PARN	92	73.445	ENSONIG00000000151	parn	91	72.941	Oreochromis_niloticus
ENSTGUG00000004971	PARN	59	84.127	ENSOANG00000020155	-	97	84.474	Ornithorhynchus_anatinus
ENSTGUG00000004971	PARN	99	82.835	ENSOCUG00000000322	PARN	100	82.835	Oryctolagus_cuniculus
ENSTGUG00000004971	PARN	94	70.715	ENSORLG00020010313	parn	88	70.667	Oryzias_latipes_hni
ENSTGUG00000004971	PARN	94	70.549	ENSORLG00015000300	parn	88	70.500	Oryzias_latipes_hsok
ENSTGUG00000004971	PARN	95	70.695	ENSOMEG00000019555	parn	95	66.204	Oryzias_melastigma
ENSTGUG00000004971	PARN	76	86.735	ENSOGAG00000014626	PARN	99	86.735	Otolemur_garnettii
ENSTGUG00000004971	PARN	76	89.571	ENSOARG00000007574	PARN	99	89.571	Ovis_aries
ENSTGUG00000004971	PARN	99	83.438	ENSPPAG00000031438	PARN	99	87.037	Pan_paniscus
ENSTGUG00000004971	PARN	99	82.780	ENSPPRG00000018583	PARN	99	85.185	Panthera_pardus
ENSTGUG00000004971	PARN	99	82.780	ENSPTIG00000012135	PARN	99	85.185	Panthera_tigris_altaica
ENSTGUG00000004971	PARN	99	83.123	ENSPTRG00000007792	PARN	99	87.037	Pan_troglodytes
ENSTGUG00000004971	PARN	99	80.757	ENSPANG00000020099	PARN	99	87.037	Papio_anubis
ENSTGUG00000004971	PARN	98	71.520	ENSPKIG00000022807	parn	90	71.138	Paramormyrops_kingsleyae
ENSTGUG00000004971	PARN	97	88.169	ENSPSIG00000014804	PARN	100	86.828	Pelodiscus_sinensis
ENSTGUG00000004971	PARN	89	70.877	ENSPMGG00000014431	parn	79	71.103	Periophthalmus_magnuspinnatus
ENSTGUG00000004971	PARN	99	76.461	ENSPEMG00000018439	Parn	99	75.829	Peromyscus_maniculatus_bairdii
ENSTGUG00000004971	PARN	80	67.578	ENSPMAG00000003956	parn	97	67.578	Petromyzon_marinus
ENSTGUG00000004971	PARN	65	83.213	ENSPCIG00000001259	PARN	91	82.381	Phascolarctos_cinereus
ENSTGUG00000004971	PARN	82	77.170	ENSPFOG00000012823	parn	85	70.647	Poecilia_formosa
ENSTGUG00000004971	PARN	82	77.358	ENSPLAG00000006395	parn	85	70.813	Poecilia_latipinna
ENSTGUG00000004971	PARN	82	77.358	ENSPMEG00000007711	parn	85	70.813	Poecilia_mexicana
ENSTGUG00000004971	PARN	82	77.170	ENSPREG00000000147	parn	83	71.966	Poecilia_reticulata
ENSTGUG00000004971	PARN	99	83.019	ENSPPYG00000007123	PARN	99	83.019	Pongo_abelii
ENSTGUG00000004971	PARN	95	73.223	ENSPCAG00000001741	PARN	100	73.223	Procavia_capensis
ENSTGUG00000004971	PARN	99	81.201	ENSPCOG00000019292	PARN	99	82.143	Propithecus_coquereli
ENSTGUG00000004971	PARN	99	79.081	ENSPVAG00000002547	PARN	100	79.081	Pteropus_vampyrus
ENSTGUG00000004971	PARN	94	72.517	ENSPNYG00000006835	parn	94	70.973	Pundamilia_nyererei
ENSTGUG00000004971	PARN	84	72.233	ENSPNAG00000018905	parn	85	71.857	Pygocentrus_nattereri
ENSTGUG00000004971	PARN	50	30.462	ENSRNOG00000023140	Pnldc1	52	30.120	Rattus_norvegicus
ENSTGUG00000004971	PARN	99	77.266	ENSRNOG00000002912	Parn	98	82.828	Rattus_norvegicus
ENSTGUG00000004971	PARN	52	78.979	ENSRBIG00000018726	PARN	100	78.979	Rhinopithecus_bieti
ENSTGUG00000004971	PARN	52	78.979	ENSRROG00000011162	-	100	78.979	Rhinopithecus_roxellana
ENSTGUG00000004971	PARN	99	81.073	ENSSBOG00000034726	PARN	99	87.037	Saimiri_boliviensis_boliviensis
ENSTGUG00000004971	PARN	66	90.191	ENSSHAG00000008493	PARN	94	90.191	Sarcophilus_harrisii
ENSTGUG00000004971	PARN	99	72.337	ENSSFOG00015014165	parn	93	73.621	Scleropages_formosus
ENSTGUG00000004971	PARN	96	68.285	ENSSMAG00000000685	parn	91	67.845	Scophthalmus_maximus
ENSTGUG00000004971	PARN	99	67.551	ENSSDUG00000014555	parn	82	73.217	Seriola_dumerili
ENSTGUG00000004971	PARN	91	72.931	ENSSARG00000014339	PARN	100	72.931	Sorex_araneus
ENSTGUG00000004971	PARN	99	89.557	ENSSPUG00000007719	PARN	99	89.557	Sphenodon_punctatus
ENSTGUG00000004971	PARN	91	73.928	ENSSPAG00000007095	parn	89	71.712	Stegastes_partitus
ENSTGUG00000004971	PARN	99	81.833	ENSSSCG00000007878	PARN	89	81.833	Sus_scrofa
ENSTGUG00000004971	PARN	99	68.594	ENSTNIG00000008252	parn	99	68.701	Tetraodon_nigroviridis
ENSTGUG00000004971	PARN	91	70.294	ENSTBEG00000010407	PARN	100	70.294	Tupaia_belangeri
ENSTGUG00000004971	PARN	99	78.288	ENSTTRG00000002843	PARN	100	78.288	Tursiops_truncatus
ENSTGUG00000004971	PARN	73	75.107	ENSUAMG00000008283	PARN	95	75.107	Ursus_americanus
ENSTGUG00000004971	PARN	99	82.306	ENSUMAG00000004527	PARN	99	82.306	Ursus_maritimus
ENSTGUG00000004971	PARN	94	81.605	ENSVPAG00000008968	PARN	97	81.742	Vicugna_pacos
ENSTGUG00000004971	PARN	99	82.622	ENSVVUG00000019509	PARN	99	82.622	Vulpes_vulpes
ENSTGUG00000004971	PARN	99	76.972	ENSXETG00000010994	parn	99	83.654	Xenopus_tropicalis
ENSTGUG00000004971	PARN	82	72.881	ENSXCOG00000015990	parn	96	67.918	Xiphophorus_couchianus
ENSTGUG00000004971	PARN	96	68.971	ENSXMAG00000014783	parn	83	71.307	Xiphophorus_maculatus