EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000005079 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Plus strand
Length: 33703 bases
Position: chr7:9189962-9223664
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000005246	ResIII	PF04851.15	2.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000005298	SMARCAL1-201	2372	-	ENSTGUP00000005246	662 (aa)	-	H0Z3V2

Gene Model

Click here to download ENSTGUG00000005079's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000005079's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000005079	SMARCAL1	100	68.796	ENSG00000138375	SMARCAL1	99	69.375	Homo_sapiens
ENSTGUG00000005079	SMARCAL1	99	63.436	ENSAPOG00000020156	SMARCAL1	74	63.436	Acanthochromis_polyacanthus
ENSTGUG00000005079	SMARCAL1	95	64.615	ENSACIG00000001500	smarcal1	83	64.615	Amphilophus_citrinellus
ENSTGUG00000005079	SMARCAL1	99	64.454	ENSAOCG00000014266	SMARCAL1	76	64.454	Amphiprion_ocellaris
ENSTGUG00000005079	SMARCAL1	99	64.170	ENSAPEG00000015861	SMARCAL1	74	64.170	Amphiprion_percula
ENSTGUG00000005079	SMARCAL1	99	62.702	ENSATEG00000020624	SMARCAL1	75	62.702	Anabas_testudineus
ENSTGUG00000005079	SMARCAL1	98	83.383	ENSAPLG00000009864	SMARCAL1	71	83.138	Anas_platyrhynchos
ENSTGUG00000005079	SMARCAL1	99	71.366	ENSACAG00000004612	SMARCAL1	70	71.366	Anolis_carolinensis
ENSTGUG00000005079	SMARCAL1	99	63.583	ENSACLG00000015990	SMARCAL1	76	63.583	Astatotilapia_calliptera
ENSTGUG00000005079	SMARCAL1	99	63.583	ENSAMXG00000003350	smarcal1	77	63.877	Astyanax_mexicanus
ENSTGUG00000005079	SMARCAL1	100	77.093	ENSCPBG00000013599	SMARCAL1	70	77.093	Chrysemys_picta_bellii
ENSTGUG00000005079	SMARCAL1	93	49.287	ENSCING00000009308	-	100	48.967	Ciona_intestinalis
ENSTGUG00000005079	SMARCAL1	99	61.243	ENSCSEG00000010785	SMARCAL1	77	61.243	Cynoglossus_semilaevis
ENSTGUG00000005079	SMARCAL1	99	62.445	ENSCVAG00000018780	SMARCAL1	79	62.445	Cyprinodon_variegatus
ENSTGUG00000005079	SMARCAL1	76	54.598	ENSEBUG00000011906	SMARCAL1	72	53.831	Eptatretus_burgeri
ENSTGUG00000005079	SMARCAL1	99	62.059	ENSELUG00000010440	-	66	62.059	Esox_lucius
ENSTGUG00000005079	SMARCAL1	100	92.353	ENSFALG00000003981	SMARCAL1	71	92.353	Ficedula_albicollis
ENSTGUG00000005079	SMARCAL1	99	61.674	ENSFHEG00000008380	SMARCAL1	77	61.674	Fundulus_heteroclitus
ENSTGUG00000005079	SMARCAL1	73	62.500	ENSGMOG00000010034	smarcal1	85	62.350	Gadus_morhua
ENSTGUG00000005079	SMARCAL1	100	82.085	ENSGALG00000011475	RPL37A	71	82.085	Gallus_gallus
ENSTGUG00000005079	SMARCAL1	90	66.292	ENSGACG00000006073	SMARCAL1	100	66.853	Gasterosteus_aculeatus
ENSTGUG00000005079	SMARCAL1	94	77.364	ENSGAGG00000015660	SMARCAL1	72	77.364	Gopherus_agassizii
ENSTGUG00000005079	SMARCAL1	99	63.730	ENSHBUG00000002973	smarcal1	76	63.730	Haplochromis_burtoni
ENSTGUG00000005079	SMARCAL1	99	61.961	ENSHCOG00000017921	smarcal1	81	61.961	Hippocampus_comes
ENSTGUG00000005079	SMARCAL1	99	60.735	ENSKMAG00000012023	SMARCAL1	81	60.735	Kryptolebias_marmoratus
ENSTGUG00000005079	SMARCAL1	92	62.620	ENSLBEG00000003493	smarcal1	73	62.620	Labrus_bergylta
ENSTGUG00000005079	SMARCAL1	95	60.522	ENSLBEG00000022915	smarcal1	85	60.522	Labrus_bergylta
ENSTGUG00000005079	SMARCAL1	100	63.196	ENSLACG00000010974	SMARCAL1	72	63.196	Latimeria_chalumnae
ENSTGUG00000005079	SMARCAL1	95	67.593	ENSLOCG00000009637	smarcal1	78	67.593	Lepisosteus_oculatus
ENSTGUG00000005079	SMARCAL1	99	62.849	ENSMAMG00000000828	SMARCAL1	77	62.849	Mastacembelus_armatus
ENSTGUG00000005079	SMARCAL1	99	63.436	ENSMZEG00005007660	SMARCAL1	76	63.436	Maylandia_zebra
ENSTGUG00000005079	SMARCAL1	100	82.673	ENSMGAG00000011658	SMARCAL1	73	82.673	Meleagris_gallopavo
ENSTGUG00000005079	SMARCAL1	96	59.356	ENSMMOG00000003842	smarcal1	81	59.356	Mola_mola
ENSTGUG00000005079	SMARCAL1	99	67.737	ENSMODG00000015544	SMARCAL1	71	67.737	Monodelphis_domestica
ENSTGUG00000005079	SMARCAL1	95	64.308	ENSNBRG00000016273	smarcal1	85	64.308	Neolamprologus_brichardi
ENSTGUG00000005079	SMARCAL1	93	69.502	ENSMEUG00000004395	SMARCAL1	73	69.352	Notamacropus_eugenii
ENSTGUG00000005079	SMARCAL1	99	65.269	ENSONIG00000009036	smarcal1	99	65.269	Oreochromis_niloticus
ENSTGUG00000005079	SMARCAL1	99	61.584	ENSORLG00000016455	SMARCAL1	77	61.584	Oryzias_latipes
ENSTGUG00000005079	SMARCAL1	99	61.584	ENSORLG00020001610	SMARCAL1	77	61.584	Oryzias_latipes_hni
ENSTGUG00000005079	SMARCAL1	99	61.730	ENSORLG00015001865	SMARCAL1	77	61.730	Oryzias_latipes_hsok
ENSTGUG00000005079	SMARCAL1	99	60.704	ENSOMEG00000001845	smarcal1	80	60.704	Oryzias_melastigma
ENSTGUG00000005079	SMARCAL1	99	60.901	ENSPMGG00000019092	SMARCAL1	77	60.901	Periophthalmus_magnuspinnatus
ENSTGUG00000005079	SMARCAL1	100	67.254	ENSPCIG00000022514	SMARCAL1	72	67.957	Phascolarctos_cinereus
ENSTGUG00000005079	SMARCAL1	99	62.317	ENSPFOG00000000560	SMARCAL1	77	62.317	Poecilia_formosa
ENSTGUG00000005079	SMARCAL1	99	62.463	ENSPMEG00000018146	SMARCAL1	77	62.463	Poecilia_mexicana
ENSTGUG00000005079	SMARCAL1	70	64.592	ENSPREG00000009591	SMARCAL1	78	68.765	Poecilia_reticulata
ENSTGUG00000005079	SMARCAL1	99	65.051	ENSPNAG00000014900	smarcal1	74	65.051	Pygocentrus_nattereri
ENSTGUG00000005079	SMARCAL1	99	64.611	ENSSHAG00000013538	SMARCAL1	75	64.611	Sarcophilus_harrisii
ENSTGUG00000005079	SMARCAL1	99	61.493	ENSSMAG00000010427	SMARCAL1	74	61.640	Scophthalmus_maximus
ENSTGUG00000005079	SMARCAL1	99	62.261	ENSSDUG00000017470	SMARCAL1	73	62.261	Seriola_dumerili
ENSTGUG00000005079	SMARCAL1	99	62.261	ENSSLDG00000007224	SMARCAL1	74	62.261	Seriola_lalandi_dorsalis
ENSTGUG00000005079	SMARCAL1	100	74.302	ENSSPUG00000015369	SMARCAL1	74	74.302	Sphenodon_punctatus
ENSTGUG00000005079	SMARCAL1	95	64.154	ENSSPAG00000003742	smarcal1	83	64.154	Stegastes_partitus
ENSTGUG00000005079	SMARCAL1	99	63.490	ENSSSCG00000035501	SMARCAL1	75	64.053	Sus_scrofa
ENSTGUG00000005079	SMARCAL1	100	57.313	ENSTRUG00000010701	SMARCAL1	77	57.313	Takifugu_rubripes
ENSTGUG00000005079	SMARCAL1	100	57.903	ENSTTRG00000009001	SMARCAL1	71	58.050	Tursiops_truncatus
ENSTGUG00000005079	SMARCAL1	99	69.457	ENSXETG00000000465	smarcal1	74	69.457	Xenopus_tropicalis