EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000005114 (Gene tree)
Gene ID: 100220002
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 9636 bases
Position: chr20:6390426-6400061
Accession: 15797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000005282	PABP	PF00658.18	2.2e-29	1	1
ENSTGUP00000005282	RRM_1	PF00076.22	5.6e-86	1	4
ENSTGUP00000005282	RRM_1	PF00076.22	5.6e-86	2	4
ENSTGUP00000005282	RRM_1	PF00076.22	5.6e-86	3	4
ENSTGUP00000005282	RRM_1	PF00076.22	5.6e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000005334	PABPC1L-201	1899	-	ENSTGUP00000005282	633 (aa)	-	H0Z3Y8

Gene Model

Click here to download ENSTGUG00000005114's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03013	RNA transport	KEGG
tgu03015	mRNA surveillance pathway	KEGG
tgu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000005114's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000005114	PABPC1L	63	33.735	ENSTGUG00000008597	ELAVL4	88	33.735
ENSTGUG00000005114	PABPC1L	100	72.188	ENSTGUG00000012067	PABPC1	98	72.500
ENSTGUG00000005114	PABPC1L	59	38.095	ENSTGUG00000004470	SF3B4	74	38.095
ENSTGUG00000005114	PABPC1L	99	68.627	ENSTGUG00000001266	PABPC4	98	68.627
ENSTGUG00000005114	PABPC1L	59	31.818	ENSTGUG00000011148	TIAL1	81	31.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000005114	PABPC1L	99	74.371	ENSG00000101104	PABPC1L	98	81.250	Homo_sapiens
ENSTGUG00000005114	PABPC1L	99	69.668	ENSAPOG00000010842	pabpc1l	98	70.270	Acanthochromis_polyacanthus
ENSTGUG00000005114	PABPC1L	99	67.771	ENSAMEG00000004099	PABPC1L	100	67.922	Ailuropoda_melanoleuca
ENSTGUG00000005114	PABPC1L	98	75.172	ENSACIG00000021004	-	99	75.172	Amphilophus_citrinellus
ENSTGUG00000005114	PABPC1L	100	69.099	ENSAOCG00000006167	-	99	69.255	Amphiprion_ocellaris
ENSTGUG00000005114	PABPC1L	100	69.545	ENSAPEG00000010558	-	99	83.568	Amphiprion_percula
ENSTGUG00000005114	PABPC1L	100	70.515	ENSATEG00000007428	pabpc1l	99	70.983	Anabas_testudineus
ENSTGUG00000005114	PABPC1L	99	86.284	ENSAPLG00000008415	PABPC1L	99	86.098	Anas_platyrhynchos
ENSTGUG00000005114	PABPC1L	100	82.629	ENSACAG00000011841	PABPC1L	99	82.629	Anolis_carolinensis
ENSTGUG00000005114	PABPC1L	99	73.312	ENSANAG00000026826	PABPC1L	99	73.312	Aotus_nancymaae
ENSTGUG00000005114	PABPC1L	99	71.787	ENSACLG00000024791	pabpc1l	99	71.787	Astatotilapia_calliptera
ENSTGUG00000005114	PABPC1L	100	74.339	ENSAMXG00000013552	pabpc1l	100	74.339	Astyanax_mexicanus
ENSTGUG00000005114	PABPC1L	63	94.048	ENSBTAG00000055300	-	100	94.048	Bos_taurus
ENSTGUG00000005114	PABPC1L	61	73.152	ENSBTAG00000016849	PABPC1L	74	73.152	Bos_taurus
ENSTGUG00000005114	PABPC1L	60	81.034	ENSCJAG00000038506	-	100	81.034	Callithrix_jacchus
ENSTGUG00000005114	PABPC1L	99	73.783	ENSCJAG00000017628	PABPC1L	99	73.783	Callithrix_jacchus
ENSTGUG00000005114	PABPC1L	99	67.933	ENSCAFG00000009573	PABPC1L	100	67.933	Canis_familiaris
ENSTGUG00000005114	PABPC1L	99	73.376	ENSCAFG00020013828	PABPC1L	99	73.376	Canis_lupus_dingo
ENSTGUG00000005114	PABPC1L	97	73.984	ENSCHIG00000025759	PABPC1L	90	73.984	Capra_hircus
ENSTGUG00000005114	PABPC1L	99	73.376	ENSTSYG00000006645	PABPC1L	99	73.376	Carlito_syrichta
ENSTGUG00000005114	PABPC1L	98	66.316	ENSCAPG00000014519	PABPC1L	99	66.316	Cavia_aperea
ENSTGUG00000005114	PABPC1L	99	70.000	ENSCPOG00000013633	PABPC1L	99	70.000	Cavia_porcellus
ENSTGUG00000005114	PABPC1L	99	73.312	ENSCCAG00000023338	PABPC1L	99	73.312	Cebus_capucinus
ENSTGUG00000005114	PABPC1L	99	74.686	ENSCATG00000034065	PABPC1L	99	74.686	Cercocebus_atys
ENSTGUG00000005114	PABPC1L	99	69.953	ENSCLAG00000005298	PABPC1L	99	69.797	Chinchilla_lanigera
ENSTGUG00000005114	PABPC1L	99	74.214	ENSCSAG00000014242	PABPC1L	99	74.214	Chlorocebus_sabaeus
ENSTGUG00000005114	PABPC1L	54	84.091	ENSCPBG00000007810	-	94	84.091	Chrysemys_picta_bellii
ENSTGUG00000005114	PABPC1L	72	91.667	ENSCPBG00000017755	-	99	91.667	Chrysemys_picta_bellii
ENSTGUG00000005114	PABPC1L	97	49.802	ENSCING00000002796	-	97	49.608	Ciona_intestinalis
ENSTGUG00000005114	PABPC1L	99	63.283	ENSCSAVG00000004246	-	89	74.286	Ciona_savignyi
ENSTGUG00000005114	PABPC1L	99	56.502	ENSCSAVG00000003102	-	100	83.893	Ciona_savignyi
ENSTGUG00000005114	PABPC1L	99	71.094	ENSCANG00000037530	PABPC1L	99	71.094	Colobus_angolensis_palliatus
ENSTGUG00000005114	PABPC1L	99	65.987	ENSCGRG00001021938	Pabpc1l	99	65.987	Cricetulus_griseus_chok1gshd
ENSTGUG00000005114	PABPC1L	99	65.987	ENSCGRG00000007946	Pabpc1l	99	65.987	Cricetulus_griseus_crigri
ENSTGUG00000005114	PABPC1L	99	65.397	ENSCSEG00000021295	pabpc1l	99	65.397	Cynoglossus_semilaevis
ENSTGUG00000005114	PABPC1L	99	71.811	ENSCVAG00000015943	-	86	90.076	Cyprinodon_variegatus
ENSTGUG00000005114	PABPC1L	100	72.543	ENSDARG00000002597	pabpc1l	88	90.769	Danio_rerio
ENSTGUG00000005114	PABPC1L	99	76.070	ENSDNOG00000048450	PABPC1L	99	76.070	Dasypus_novemcinctus
ENSTGUG00000005114	PABPC1L	99	71.701	ENSDORG00000001067	Pabpc1l	99	71.701	Dipodomys_ordii
ENSTGUG00000005114	PABPC1L	95	83.740	ENSETEG00000009969	PABPC1L	72	83.740	Echinops_telfairi
ENSTGUG00000005114	PABPC1L	52	85.535	ENSEASG00005023407	-	64	85.535	Equus_asinus_asinus
ENSTGUG00000005114	PABPC1L	63	92.857	ENSEASG00005023408	-	100	92.857	Equus_asinus_asinus
ENSTGUG00000005114	PABPC1L	66	75.417	ENSECAG00000040139	-	81	75.417	Equus_caballus
ENSTGUG00000005114	PABPC1L	99	70.347	ENSEEUG00000005978	PABPC1L	99	70.347	Erinaceus_europaeus
ENSTGUG00000005114	PABPC1L	100	77.902	ENSELUG00000001811	pabpc1l	99	77.902	Esox_lucius
ENSTGUG00000005114	PABPC1L	99	73.927	ENSFCAG00000011692	PABPC1L	99	73.927	Felis_catus
ENSTGUG00000005114	PABPC1L	85	93.956	ENSFALG00000005372	PABPC1L	93	91.829	Ficedula_albicollis
ENSTGUG00000005114	PABPC1L	99	69.620	ENSFDAG00000008291	PABPC1L	99	69.620	Fukomys_damarensis
ENSTGUG00000005114	PABPC1L	100	71.429	ENSFHEG00000003398	pabpc1l	99	71.429	Fundulus_heteroclitus
ENSTGUG00000005114	PABPC1L	100	72.170	ENSGMOG00000004437	pabpc1l	99	72.170	Gadus_morhua
ENSTGUG00000005114	PABPC1L	85	88.742	ENSGALG00000004123	PABPC1L	98	92.706	Gallus_gallus
ENSTGUG00000005114	PABPC1L	100	67.359	ENSGAFG00000021057	pabpc1l	99	67.359	Gambusia_affinis
ENSTGUG00000005114	PABPC1L	99	70.000	ENSGACG00000002792	pabpc1l	99	70.000	Gasterosteus_aculeatus
ENSTGUG00000005114	PABPC1L	99	87.281	ENSGAGG00000000589	PABPC1L	98	87.281	Gopherus_agassizii
ENSTGUG00000005114	PABPC1L	99	74.214	ENSGGOG00000004584	PABPC1L	99	74.214	Gorilla_gorilla
ENSTGUG00000005114	PABPC1L	99	71.473	ENSHBUG00000006134	pabpc1l	99	71.630	Haplochromis_burtoni
ENSTGUG00000005114	PABPC1L	99	70.295	ENSHGLG00000008434	PABPC1L	99	70.295	Heterocephalus_glaber_female
ENSTGUG00000005114	PABPC1L	61	86.517	ENSHGLG00100019506	-	100	86.517	Heterocephalus_glaber_male
ENSTGUG00000005114	PABPC1L	99	70.295	ENSHGLG00100012151	PABPC1L	99	70.295	Heterocephalus_glaber_male
ENSTGUG00000005114	PABPC1L	98	69.180	ENSHCOG00000009270	pabpc1l	99	69.180	Hippocampus_comes
ENSTGUG00000005114	PABPC1L	60	64.368	ENSIPUG00000006780	-	85	64.368	Ictalurus_punctatus
ENSTGUG00000005114	PABPC1L	60	63.793	ENSIPUG00000006760	-	88	63.793	Ictalurus_punctatus
ENSTGUG00000005114	PABPC1L	100	74.766	ENSIPUG00000012602	pabpc1l	99	74.766	Ictalurus_punctatus
ENSTGUG00000005114	PABPC1L	99	72.713	ENSSTOG00000003739	PABPC1L	99	72.713	Ictidomys_tridecemlineatus
ENSTGUG00000005114	PABPC1L	99	56.195	ENSJJAG00000022406	Pabpc1l	99	54.304	Jaculus_jaculus
ENSTGUG00000005114	PABPC1L	100	71.654	ENSKMAG00000016847	pabpc1l	100	71.654	Kryptolebias_marmoratus
ENSTGUG00000005114	PABPC1L	99	70.236	ENSLBEG00000010084	pabpc1l	99	70.236	Labrus_bergylta
ENSTGUG00000005114	PABPC1L	100	75.116	ENSLACG00000005762	PABPC1L	96	79.182	Latimeria_chalumnae
ENSTGUG00000005114	PABPC1L	99	76.766	ENSLOCG00000007519	pabpc1l	98	76.766	Lepisosteus_oculatus
ENSTGUG00000005114	PABPC1L	99	73.742	ENSLAFG00000003553	PABPC1L	100	73.742	Loxodonta_africana
ENSTGUG00000005114	PABPC1L	99	74.528	ENSMFAG00000040365	PABPC1L	99	74.528	Macaca_fascicularis
ENSTGUG00000005114	PABPC1L	99	73.428	ENSMNEG00000032298	PABPC1L	99	73.428	Macaca_nemestrina
ENSTGUG00000005114	PABPC1L	99	74.686	ENSMLEG00000043139	PABPC1L	99	74.686	Mandrillus_leucophaeus
ENSTGUG00000005114	PABPC1L	97	70.759	ENSMAMG00000011854	pabpc1l	97	70.759	Mastacembelus_armatus
ENSTGUG00000005114	PABPC1L	99	71.787	ENSMZEG00005023713	pabpc1l	99	71.787	Maylandia_zebra
ENSTGUG00000005114	PABPC1L	100	87.717	ENSMGAG00000003674	PABPC1L	99	87.717	Meleagris_gallopavo
ENSTGUG00000005114	PABPC1L	99	64.375	ENSMOCG00000013186	Pabpc1l	99	64.375	Microtus_ochrogaster
ENSTGUG00000005114	PABPC1L	100	70.958	ENSMMOG00000020574	-	90	90.769	Mola_mola
ENSTGUG00000005114	PABPC1L	94	76.987	ENSMODG00000016198	PABPC1L	99	77.134	Monodelphis_domestica
ENSTGUG00000005114	PABPC1L	97	70.257	ENSMALG00000021622	pabpc1l	100	70.257	Monopterus_albus
ENSTGUG00000005114	PABPC1L	99	65.777	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	65.777	Mus_caroli
ENSTGUG00000005114	PABPC1L	99	65.777	ENSMUSG00000054582	Pabpc1l	99	65.777	Mus_musculus
ENSTGUG00000005114	PABPC1L	99	65.679	MGP_PahariEiJ_G0026071	Pabpc1l	99	65.679	Mus_pahari
ENSTGUG00000005114	PABPC1L	99	65.777	MGP_SPRETEiJ_G0025549	Pabpc1l	99	65.777	Mus_spretus
ENSTGUG00000005114	PABPC1L	99	74.132	ENSMPUG00000017646	PABPC1L	99	74.132	Mustela_putorius_furo
ENSTGUG00000005114	PABPC1L	98	69.640	ENSMLUG00000006324	PABPC1L	98	69.640	Myotis_lucifugus
ENSTGUG00000005114	PABPC1L	99	66.250	ENSNGAG00000010458	Pabpc1l	99	66.250	Nannospalax_galili
ENSTGUG00000005114	PABPC1L	98	74.388	ENSNBRG00000016633	pabpc1l	99	74.388	Neolamprologus_brichardi
ENSTGUG00000005114	PABPC1L	90	71.228	ENSMEUG00000007905	-	89	71.228	Notamacropus_eugenii
ENSTGUG00000005114	PABPC1L	99	72.370	ENSOPRG00000011846	PABPC1L	99	72.370	Ochotona_princeps
ENSTGUG00000005114	PABPC1L	58	79.375	ENSODEG00000002920	-	97	79.375	Octodon_degus
ENSTGUG00000005114	PABPC1L	99	64.669	ENSODEG00000015482	PABPC1L	99	64.669	Octodon_degus
ENSTGUG00000005114	PABPC1L	99	71.630	ENSONIG00000017314	pabpc1l	99	71.630	Oreochromis_niloticus
ENSTGUG00000005114	PABPC1L	90	67.247	ENSOANG00000015793	-	100	67.247	Ornithorhynchus_anatinus
ENSTGUG00000005114	PABPC1L	99	69.760	ENSOCUG00000003005	PABPC1L	99	69.760	Oryctolagus_cuniculus
ENSTGUG00000005114	PABPC1L	99	74.944	ENSORLG00000010322	pabpc1l	99	74.944	Oryzias_latipes
ENSTGUG00000005114	PABPC1L	99	74.944	ENSORLG00020021193	pabpc1l	99	74.944	Oryzias_latipes_hni
ENSTGUG00000005114	PABPC1L	99	74.944	ENSORLG00015017018	pabpc1l	99	74.944	Oryzias_latipes_hsok
ENSTGUG00000005114	PABPC1L	100	67.213	ENSOMEG00000010789	pabpc1l	99	67.213	Oryzias_melastigma
ENSTGUG00000005114	PABPC1L	99	72.613	ENSOGAG00000032999	PABPC1L	99	72.613	Otolemur_garnettii
ENSTGUG00000005114	PABPC1L	99	73.734	ENSOARG00000004578	PABPC1L	99	73.734	Ovis_aries
ENSTGUG00000005114	PABPC1L	99	74.528	ENSPPAG00000039677	PABPC1L	99	74.528	Pan_paniscus
ENSTGUG00000005114	PABPC1L	63	69.643	ENSPPRG00000019327	-	98	70.833	Panthera_pardus
ENSTGUG00000005114	PABPC1L	98	73.676	ENSPTIG00000006524	PABPC1L	99	73.676	Panthera_tigris_altaica
ENSTGUG00000005114	PABPC1L	63	81.548	ENSPTRG00000013531	PABPC1L	98	81.548	Pan_troglodytes
ENSTGUG00000005114	PABPC1L	99	74.686	ENSPANG00000018788	PABPC1L	99	74.686	Papio_anubis
ENSTGUG00000005114	PABPC1L	100	75.392	ENSPKIG00000007322	pabpc1l	100	75.392	Paramormyrops_kingsleyae
ENSTGUG00000005114	PABPC1L	54	84.733	ENSPKIG00000016810	-	93	84.733	Paramormyrops_kingsleyae
ENSTGUG00000005114	PABPC1L	68	91.142	ENSPSIG00000013289	PABPC1L	99	91.142	Pelodiscus_sinensis
ENSTGUG00000005114	PABPC1L	63	88.636	ENSPMGG00000023117	pabpc1l	97	84.651	Periophthalmus_magnuspinnatus
ENSTGUG00000005114	PABPC1L	72	69.500	ENSPMGG00000023121	-	93	69.500	Periophthalmus_magnuspinnatus
ENSTGUG00000005114	PABPC1L	99	64.992	ENSPEMG00000020671	Pabpc1l	99	65.211	Peromyscus_maniculatus_bairdii
ENSTGUG00000005114	PABPC1L	100	71.654	ENSPFOG00000013241	pabpc1l	99	71.654	Poecilia_formosa
ENSTGUG00000005114	PABPC1L	100	71.028	ENSPLAG00000017490	-	99	71.028	Poecilia_latipinna
ENSTGUG00000005114	PABPC1L	63	91.538	ENSPLAG00000023686	-	92	91.538	Poecilia_latipinna
ENSTGUG00000005114	PABPC1L	63	91.538	ENSPMEG00000009185	-	88	91.538	Poecilia_mexicana
ENSTGUG00000005114	PABPC1L	100	71.406	ENSPMEG00000007677	pabpc1l	99	71.406	Poecilia_mexicana
ENSTGUG00000005114	PABPC1L	67	80.000	ENSPREG00000015886	pabpc1l	99	80.000	Poecilia_reticulata
ENSTGUG00000005114	PABPC1L	99	74.214	ENSPPYG00000011042	PABPC1L	99	74.214	Pongo_abelii
ENSTGUG00000005114	PABPC1L	62	93.750	ENSPCAG00000011787	-	75	93.750	Procavia_capensis
ENSTGUG00000005114	PABPC1L	99	73.776	ENSPCOG00000020630	PABPC1L	100	73.776	Propithecus_coquereli
ENSTGUG00000005114	PABPC1L	99	72.152	ENSPVAG00000012663	PABPC1L	99	72.152	Pteropus_vampyrus
ENSTGUG00000005114	PABPC1L	98	74.388	ENSPNYG00000004101	pabpc1l	99	74.388	Pundamilia_nyererei
ENSTGUG00000005114	PABPC1L	100	68.487	ENSPNAG00000021248	pabpc1l	99	68.487	Pygocentrus_nattereri
ENSTGUG00000005114	PABPC1L	99	64.678	ENSRNOG00000012750	Pabpc1l	99	65.055	Rattus_norvegicus
ENSTGUG00000005114	PABPC1L	99	74.643	ENSRBIG00000035381	PABPC1L	99	74.643	Rhinopithecus_bieti
ENSTGUG00000005114	PABPC1L	99	74.371	ENSRROG00000044498	PABPC1L	99	74.371	Rhinopithecus_roxellana
ENSTGUG00000005114	PABPC1L	99	73.312	ENSSBOG00000009532	-	99	73.312	Saimiri_boliviensis_boliviensis
ENSTGUG00000005114	PABPC1L	98	70.437	ENSSHAG00000011446	PABPC1L	100	70.437	Sarcophilus_harrisii
ENSTGUG00000005114	PABPC1L	100	76.176	ENSSFOG00015017304	pabpc1l	99	76.176	Scleropages_formosus
ENSTGUG00000005114	PABPC1L	100	69.797	ENSSMAG00000010516	pabpc1l	98	87.500	Scophthalmus_maximus
ENSTGUG00000005114	PABPC1L	100	70.249	ENSSDUG00000014743	pabpc1l	99	70.249	Seriola_dumerili
ENSTGUG00000005114	PABPC1L	98	74.330	ENSSLDG00000006981	pabpc1l	98	87.560	Seriola_lalandi_dorsalis
ENSTGUG00000005114	PABPC1L	100	84.038	ENSSPUG00000004233	PABPC1L	99	84.038	Sphenodon_punctatus
ENSTGUG00000005114	PABPC1L	100	63.665	ENSSPAG00000017137	pabpc1l	99	63.665	Stegastes_partitus
ENSTGUG00000005114	PABPC1L	99	73.186	ENSSSCG00000007382	PABPC1L	99	73.186	Sus_scrofa
ENSTGUG00000005114	PABPC1L	97	70.947	ENSTRUG00000011085	pabpc1l	97	70.947	Takifugu_rubripes
ENSTGUG00000005114	PABPC1L	99	69.036	ENSTNIG00000017903	pabpc1l	98	69.036	Tetraodon_nigroviridis
ENSTGUG00000005114	PABPC1L	94	82.237	ENSTBEG00000002851	PABPC1L	79	82.237	Tupaia_belangeri
ENSTGUG00000005114	PABPC1L	94	72.788	ENSTTRG00000007618	PABPC1L	100	73.008	Tursiops_truncatus
ENSTGUG00000005114	PABPC1L	99	72.496	ENSUAMG00000017682	PABPC1L	99	72.496	Ursus_americanus
ENSTGUG00000005114	PABPC1L	66	80.323	ENSUMAG00000025436	PABPC1L	92	80.323	Ursus_maritimus
ENSTGUG00000005114	PABPC1L	98	78.491	ENSVVUG00000018939	PABPC1L	98	78.491	Vulpes_vulpes
ENSTGUG00000005114	PABPC1L	100	74.922	ENSXETG00000022831	pabpc1l	99	74.922	Xenopus_tropicalis
ENSTGUG00000005114	PABPC1L	98	75.115	ENSXCOG00000005459	pabpc1l	99	86.525	Xiphophorus_couchianus
ENSTGUG00000005114	PABPC1L	100	70.717	ENSXMAG00000017135	pabpc1l	99	70.717	Xiphophorus_maculatus