EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000005836 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 107089 bases
Position: chr19:6860353-6967441
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000006022	EST1	PF10374.9	6.3e-15	1	1
ENSTGUP00000006022	EST1_DNA_bind	PF10373.9	2.7e-59	1	1
ENSTGUP00000006022	PIN_4	PF13638.6	1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000006081	SMG6-201	4206	-	ENSTGUP00000006022	1401 (aa)	-	H0Z624

Gene Model

Click here to download ENSTGUG00000005836's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000005836's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000005836	SMG6	100	71.950	ENSG00000070366	SMG6	100	84.149	Homo_sapiens
ENSTGUG00000005836	SMG6	88	53.566	ENSAPOG00000019448	smg6	78	53.985	Acanthochromis_polyacanthus
ENSTGUG00000005836	SMG6	100	72.874	ENSAMEG00000007632	SMG6	100	72.734	Ailuropoda_melanoleuca
ENSTGUG00000005836	SMG6	72	59.852	ENSACIG00000012997	smg6	71	60.592	Amphilophus_citrinellus
ENSTGUG00000005836	SMG6	88	53.525	ENSAOCG00000002630	smg6	78	53.788	Amphiprion_ocellaris
ENSTGUG00000005836	SMG6	88	53.253	ENSAPEG00000019101	smg6	78	53.713	Amphiprion_percula
ENSTGUG00000005836	SMG6	88	52.919	ENSATEG00000006483	smg6	77	53.104	Anabas_testudineus
ENSTGUG00000005836	SMG6	87	61.151	ENSACAG00000011783	SMG6	99	61.293	Anolis_carolinensis
ENSTGUG00000005836	SMG6	100	72.440	ENSANAG00000035760	SMG6	100	72.230	Aotus_nancymaae
ENSTGUG00000005836	SMG6	69	60.019	ENSACLG00000005288	smg6	83	53.443	Astatotilapia_calliptera
ENSTGUG00000005836	SMG6	69	62.323	ENSAMXG00000017326	smg6	72	61.822	Astyanax_mexicanus
ENSTGUG00000005836	SMG6	100	73.174	ENSBTAG00000000267	SMG6	100	73.034	Bos_taurus
ENSTGUG00000005836	SMG6	100	72.160	ENSCJAG00000001820	SMG6	100	72.020	Callithrix_jacchus
ENSTGUG00000005836	SMG6	100	73.001	ENSCAFG00000019260	SMG6	100	72.861	Canis_familiaris
ENSTGUG00000005836	SMG6	100	73.001	ENSCAFG00020009770	SMG6	100	72.861	Canis_lupus_dingo
ENSTGUG00000005836	SMG6	100	72.670	ENSCHIG00000021998	SMG6	100	72.740	Capra_hircus
ENSTGUG00000005836	SMG6	100	71.509	ENSTSYG00000003406	SMG6	100	83.953	Carlito_syrichta
ENSTGUG00000005836	SMG6	90	72.365	ENSCAPG00000016197	SMG6	99	72.365	Cavia_aperea
ENSTGUG00000005836	SMG6	100	71.459	ENSCPOG00000014878	SMG6	98	81.385	Cavia_porcellus
ENSTGUG00000005836	SMG6	100	72.791	ENSCCAG00000035801	SMG6	100	72.651	Cebus_capucinus
ENSTGUG00000005836	SMG6	100	72.230	ENSCATG00000031956	SMG6	100	72.090	Cercocebus_atys
ENSTGUG00000005836	SMG6	100	72.702	ENSCLAG00000006748	SMG6	98	81.356	Chinchilla_lanigera
ENSTGUG00000005836	SMG6	100	72.479	ENSCSAG00000013800	SMG6	100	72.339	Chlorocebus_sabaeus
ENSTGUG00000005836	SMG6	50	86.567	ENSCHOG00000005024	-	65	86.567	Choloepus_hoffmanni
ENSTGUG00000005836	SMG6	100	81.049	ENSCPBG00000020369	SMG6	100	80.839	Chrysemys_picta_bellii
ENSTGUG00000005836	SMG6	98	72.258	ENSCANG00000031764	SMG6	100	83.953	Colobus_angolensis_palliatus
ENSTGUG00000005836	SMG6	55	61.578	ENSCGRG00001019595	Smg6	100	61.323	Cricetulus_griseus_chok1gshd
ENSTGUG00000005836	SMG6	98	65.852	ENSCGRG00000007782	Smg6	100	65.780	Cricetulus_griseus_crigri
ENSTGUG00000005836	SMG6	97	54.396	ENSCSEG00000012757	smg6	78	55.323	Cynoglossus_semilaevis
ENSTGUG00000005836	SMG6	73	56.732	ENSCVAG00000012789	smg6	77	52.656	Cyprinodon_variegatus
ENSTGUG00000005836	SMG6	100	49.831	ENSDARG00000100481	smg6	100	49.763	Danio_rerio
ENSTGUG00000005836	SMG6	100	72.090	ENSDNOG00000048283	SMG6	100	71.950	Dasypus_novemcinctus
ENSTGUG00000005836	SMG6	100	68.693	ENSDORG00000016614	Smg6	94	85.135	Dipodomys_ordii
ENSTGUG00000005836	SMG6	93	90.476	ENSETEG00000016790	SMG6	93	90.476	Echinops_telfairi
ENSTGUG00000005836	SMG6	65	51.883	ENSEBUG00000005059	smg6	72	47.315	Eptatretus_burgeri
ENSTGUG00000005836	SMG6	99	73.244	ENSEASG00005009318	SMG6	99	72.963	Equus_asinus_asinus
ENSTGUG00000005836	SMG6	99	73.034	ENSECAG00000006519	SMG6	99	72.753	Equus_caballus
ENSTGUG00000005836	SMG6	100	62.719	ENSEEUG00000003493	SMG6	100	62.771	Erinaceus_europaeus
ENSTGUG00000005836	SMG6	72	60.463	ENSELUG00000005934	smg6	67	56.566	Esox_lucius
ENSTGUG00000005836	SMG6	100	73.212	ENSFCAG00000028817	SMG6	100	73.072	Felis_catus
ENSTGUG00000005836	SMG6	98	93.885	ENSFALG00000006538	SMG6	100	93.885	Ficedula_albicollis
ENSTGUG00000005836	SMG6	100	72.222	ENSFDAG00000015106	SMG6	100	77.959	Fukomys_damarensis
ENSTGUG00000005836	SMG6	88	51.711	ENSFHEG00000013282	smg6	78	52.395	Fundulus_heteroclitus
ENSTGUG00000005836	SMG6	53	66.822	ENSGMOG00000019077	smg6	67	66.822	Gadus_morhua
ENSTGUG00000005836	SMG6	100	86.662	ENSGALG00000003108	SMG6	98	86.732	Gallus_gallus
ENSTGUG00000005836	SMG6	87	52.829	ENSGAFG00000000379	smg6	76	53.232	Gambusia_affinis
ENSTGUG00000005836	SMG6	91	53.518	ENSGACG00000020521	smg6	99	53.513	Gasterosteus_aculeatus
ENSTGUG00000005836	SMG6	98	80.888	ENSGAGG00000025617	SMG6	100	80.888	Gopherus_agassizii
ENSTGUG00000005836	SMG6	100	72.440	ENSGGOG00000017156	SMG6	100	72.300	Gorilla_gorilla
ENSTGUG00000005836	SMG6	83	53.470	ENSHBUG00000021311	smg6	74	55.153	Haplochromis_burtoni
ENSTGUG00000005836	SMG6	100	71.759	ENSHGLG00000012882	SMG6	94	83.857	Heterocephalus_glaber_female
ENSTGUG00000005836	SMG6	100	71.829	ENSHGLG00100017815	SMG6	94	83.857	Heterocephalus_glaber_male
ENSTGUG00000005836	SMG6	72	58.413	ENSHCOG00000008761	smg6	83	58.492	Hippocampus_comes
ENSTGUG00000005836	SMG6	99	55.431	ENSIPUG00000012493	smg6	76	55.751	Ictalurus_punctatus
ENSTGUG00000005836	SMG6	100	72.702	ENSSTOG00000028127	SMG6	94	85.202	Ictidomys_tridecemlineatus
ENSTGUG00000005836	SMG6	79	67.022	ENSJJAG00000015367	Smg6	95	65.487	Jaculus_jaculus
ENSTGUG00000005836	SMG6	99	52.427	ENSKMAG00000000279	smg6	78	52.910	Kryptolebias_marmoratus
ENSTGUG00000005836	SMG6	85	53.159	ENSLBEG00000002184	smg6	77	52.849	Labrus_bergylta
ENSTGUG00000005836	SMG6	56	55.447	ENSLACG00000000806	-	98	55.514	Latimeria_chalumnae
ENSTGUG00000005836	SMG6	97	54.376	ENSLOCG00000006448	smg6	99	55.318	Lepisosteus_oculatus
ENSTGUG00000005836	SMG6	100	71.809	ENSLAFG00000001261	SMG6	100	71.669	Loxodonta_africana
ENSTGUG00000005836	SMG6	100	72.300	ENSMFAG00000003394	SMG6	100	72.160	Macaca_fascicularis
ENSTGUG00000005836	SMG6	100	72.230	ENSMMUG00000023161	SMG6	100	72.090	Macaca_mulatta
ENSTGUG00000005836	SMG6	100	68.956	ENSMNEG00000044592	SMG6	100	68.816	Macaca_nemestrina
ENSTGUG00000005836	SMG6	93	84.586	ENSMLEG00000029353	SMG6	100	84.586	Mandrillus_leucophaeus
ENSTGUG00000005836	SMG6	85	54.854	ENSMAMG00000020119	smg6	80	55.196	Mastacembelus_armatus
ENSTGUG00000005836	SMG6	69	59.962	ENSMZEG00005024736	smg6	77	53.424	Maylandia_zebra
ENSTGUG00000005836	SMG6	72	82.364	ENSMGAG00000005401	-	97	82.267	Meleagris_gallopavo
ENSTGUG00000005836	SMG6	100	72.931	ENSMICG00000012913	SMG6	100	72.791	Microcebus_murinus
ENSTGUG00000005836	SMG6	100	46.683	ENSMMOG00000010883	smg6	100	47.022	Mola_mola
ENSTGUG00000005836	SMG6	100	72.568	ENSMODG00000010622	SMG6	100	72.358	Monodelphis_domestica
ENSTGUG00000005836	SMG6	87	53.684	ENSMALG00000001106	smg6	77	53.863	Monopterus_albus
ENSTGUG00000005836	SMG6	100	71.910	MGP_CAROLIEiJ_G0016729	Smg6	98	80.115	Mus_caroli
ENSTGUG00000005836	SMG6	100	71.980	ENSMUSG00000038290	Smg6	94	83.408	Mus_musculus
ENSTGUG00000005836	SMG6	100	71.208	MGP_PahariEiJ_G0017866	Smg6	96	81.659	Mus_pahari
ENSTGUG00000005836	SMG6	100	71.980	MGP_SPRETEiJ_G0017572	Smg6	98	80.403	Mus_spretus
ENSTGUG00000005836	SMG6	100	73.212	ENSMPUG00000013046	SMG6	100	73.001	Mustela_putorius_furo
ENSTGUG00000005836	SMG6	100	72.382	ENSMLUG00000005739	SMG6	100	72.312	Myotis_lucifugus
ENSTGUG00000005836	SMG6	98	71.264	ENSNGAG00000007287	Smg6	94	83.408	Nannospalax_galili
ENSTGUG00000005836	SMG6	88	52.724	ENSNBRG00000009511	smg6	84	52.392	Neolamprologus_brichardi
ENSTGUG00000005836	SMG6	98	72.009	ENSNLEG00000017171	SMG6	100	84.149	Nomascus_leucogenys
ENSTGUG00000005836	SMG6	98	70.529	ENSMEUG00000015804	SMG6	100	70.407	Notamacropus_eugenii
ENSTGUG00000005836	SMG6	63	76.364	ENSOPRG00000000579	SMG6	91	76.364	Ochotona_princeps
ENSTGUG00000005836	SMG6	100	64.846	ENSODEG00000008038	SMG6	100	64.636	Octodon_degus
ENSTGUG00000005836	SMG6	100	50.201	ENSONIG00000005594	smg6	100	51.041	Oreochromis_niloticus
ENSTGUG00000005836	SMG6	100	71.899	ENSOCUG00000013018	SMG6	100	71.829	Oryctolagus_cuniculus
ENSTGUG00000005836	SMG6	88	53.035	ENSORLG00000003317	smg6	77	52.874	Oryzias_latipes
ENSTGUG00000005836	SMG6	88	52.776	ENSORLG00020015343	smg6	77	52.528	Oryzias_latipes_hni
ENSTGUG00000005836	SMG6	88	52.856	ENSORLG00015020454	smg6	77	52.608	Oryzias_latipes_hsok
ENSTGUG00000005836	SMG6	89	51.786	ENSOMEG00000010838	smg6	79	52.158	Oryzias_melastigma
ENSTGUG00000005836	SMG6	100	72.440	ENSOGAG00000004483	SMG6	100	72.300	Otolemur_garnettii
ENSTGUG00000005836	SMG6	100	71.689	ENSOARG00000015076	SMG6	100	72.989	Ovis_aries
ENSTGUG00000005836	SMG6	100	72.230	ENSPPAG00000043296	SMG6	100	72.090	Pan_paniscus
ENSTGUG00000005836	SMG6	100	73.142	ENSPPRG00000014581	SMG6	100	73.001	Panthera_pardus
ENSTGUG00000005836	SMG6	98	73.329	ENSPTIG00000008925	SMG6	100	84.932	Panthera_tigris_altaica
ENSTGUG00000005836	SMG6	100	72.300	ENSPTRG00000008544	SMG6	100	84.149	Pan_troglodytes
ENSTGUG00000005836	SMG6	100	72.370	ENSPANG00000024588	SMG6	100	72.230	Papio_anubis
ENSTGUG00000005836	SMG6	88	78.532	ENSPSIG00000006660	SMG6	96	78.532	Pelodiscus_sinensis
ENSTGUG00000005836	SMG6	92	61.333	ENSPMGG00000000844	smg6	100	49.037	Periophthalmus_magnuspinnatus
ENSTGUG00000005836	SMG6	100	71.539	ENSPEMG00000020707	Smg6	98	81.659	Peromyscus_maniculatus_bairdii
ENSTGUG00000005836	SMG6	100	50.712	ENSPFOG00000012035	smg6	100	50.673	Poecilia_formosa
ENSTGUG00000005836	SMG6	88	52.457	ENSPLAG00000017660	smg6	83	50.885	Poecilia_latipinna
ENSTGUG00000005836	SMG6	88	53.057	ENSPMEG00000000258	smg6	83	51.168	Poecilia_mexicana
ENSTGUG00000005836	SMG6	88	52.691	ENSPREG00000010066	smg6	83	50.851	Poecilia_reticulata
ENSTGUG00000005836	SMG6	100	67.413	ENSPPYG00000007790	SMG6	100	67.273	Pongo_abelii
ENSTGUG00000005836	SMG6	100	69.678	ENSPCAG00000000552	SMG6	100	69.538	Procavia_capensis
ENSTGUG00000005836	SMG6	100	72.581	ENSPCOG00000020925	SMG6	100	72.440	Propithecus_coquereli
ENSTGUG00000005836	SMG6	84	73.733	ENSPVAG00000002159	SMG6	83	73.502	Pteropus_vampyrus
ENSTGUG00000005836	SMG6	88	52.705	ENSPNYG00000024151	smg6	83	54.273	Pundamilia_nyererei
ENSTGUG00000005836	SMG6	92	61.828	ENSPNAG00000015480	smg6	87	61.828	Pygocentrus_nattereri
ENSTGUG00000005836	SMG6	100	71.208	ENSRNOG00000003041	Smg6	97	80.403	Rattus_norvegicus
ENSTGUG00000005836	SMG6	100	72.160	ENSRBIG00000024746	SMG6	100	72.020	Rhinopithecus_bieti
ENSTGUG00000005836	SMG6	100	72.090	ENSRROG00000030423	SMG6	100	83.757	Rhinopithecus_roxellana
ENSTGUG00000005836	SMG6	100	72.581	ENSSBOG00000022518	SMG6	100	71.038	Saimiri_boliviensis_boliviensis
ENSTGUG00000005836	SMG6	98	72.877	ENSSHAG00000010045	SMG6	98	72.662	Sarcophilus_harrisii
ENSTGUG00000005836	SMG6	73	61.808	ENSSFOG00015005436	smg6	74	55.598	Scleropages_formosus
ENSTGUG00000005836	SMG6	88	52.932	ENSSMAG00000019777	smg6	64	59.455	Scophthalmus_maximus
ENSTGUG00000005836	SMG6	83	55.091	ENSSDUG00000016412	smg6	74	55.118	Seriola_dumerili
ENSTGUG00000005836	SMG6	85	51.745	ENSSLDG00000020747	smg6	82	51.779	Seriola_lalandi_dorsalis
ENSTGUG00000005836	SMG6	99	75.349	ENSSPUG00000007152	SMG6	99	75.279	Sphenodon_punctatus
ENSTGUG00000005836	SMG6	85	53.995	ENSSPAG00000015633	smg6	78	53.598	Stegastes_partitus
ENSTGUG00000005836	SMG6	100	72.511	ENSSSCG00000017826	SMG6	100	72.370	Sus_scrofa
ENSTGUG00000005836	SMG6	100	48.614	ENSTRUG00000000358	smg6	100	48.840	Takifugu_rubripes
ENSTGUG00000005836	SMG6	100	49.703	ENSTNIG00000016164	smg6	100	50.463	Tetraodon_nigroviridis
ENSTGUG00000005836	SMG6	100	68.847	ENSTBEG00000011424	SMG6	100	68.706	Tupaia_belangeri
ENSTGUG00000005836	SMG6	91	79.091	ENSTTRG00000001175	SMG6	91	79.091	Tursiops_truncatus
ENSTGUG00000005836	SMG6	100	72.861	ENSUAMG00000025152	SMG6	100	72.969	Ursus_americanus
ENSTGUG00000005836	SMG6	98	73.271	ENSUMAG00000009306	SMG6	100	73.199	Ursus_maritimus
ENSTGUG00000005836	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSTGUG00000005836	SMG6	100	72.791	ENSVVUG00000021727	SMG6	100	72.651	Vulpes_vulpes
ENSTGUG00000005836	SMG6	98	57.746	ENSXETG00000023799	SMG6	100	57.736	Xenopus_tropicalis
ENSTGUG00000005836	SMG6	88	53.050	ENSXCOG00000009867	smg6	82	51.566	Xiphophorus_couchianus
ENSTGUG00000005836	SMG6	88	52.576	ENSXMAG00000010321	smg6	81	51.496	Xiphophorus_maculatus