EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000006172 (Gene tree)
Gene ID: -
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Plus strand
Length: 23722 bases
Position: chr8:10976919-11000640
Accession: 20193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000006345	ResIII	PF04851.15	4.1e-13	1	1
ENSTGUP00000006345	DEAD	PF00270.29	1.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000006411	HFM1-202	1005	-	ENSTGUP00000006347	335 (aa)	-	H0Z6Z8
ENSTGUT00000006409	HFM1-201	2871	-	ENSTGUP00000006345	957 (aa)	-	H0Z6Z6

Gene Model

Click here to download ENSTGUG00000006172's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000006172's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000006172	HFM1	82	35.072	ENSTGUG00000014475	-	67	35.072
ENSTGUG00000006172	HFM1	75	34.312	ENSTGUG00000012262	ASCC3	67	34.312

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000006172	HFM1	100	75.131	ENSG00000162669	HFM1	66	75.131	Homo_sapiens
ENSTGUG00000006172	HFM1	86	66.224	ENSAPOG00000005304	hfm1	93	66.224	Acanthochromis_polyacanthus
ENSTGUG00000006172	HFM1	99	77.092	ENSAMEG00000000432	HFM1	66	77.092	Ailuropoda_melanoleuca
ENSTGUG00000006172	HFM1	97	64.554	ENSACIG00000021553	hfm1	83	64.554	Amphilophus_citrinellus
ENSTGUG00000006172	HFM1	86	67.110	ENSAOCG00000022839	hfm1	96	69.270	Amphiprion_ocellaris
ENSTGUG00000006172	HFM1	86	66.989	ENSAPEG00000014316	hfm1	96	69.571	Amphiprion_percula
ENSTGUG00000006172	HFM1	99	63.533	ENSATEG00000019181	hfm1	80	62.664	Anabas_testudineus
ENSTGUG00000006172	HFM1	99	88.598	ENSAPLG00000013639	HFM1	66	88.598	Anas_platyrhynchos
ENSTGUG00000006172	HFM1	100	73.800	ENSANAG00000029513	HFM1	66	73.800	Aotus_nancymaae
ENSTGUG00000006172	HFM1	98	63.966	ENSACLG00000009033	hfm1	95	65.939	Astatotilapia_calliptera
ENSTGUG00000006172	HFM1	100	65.057	ENSAMXG00000006108	hfm1	67	65.057	Astyanax_mexicanus
ENSTGUG00000006172	HFM1	100	75.235	ENSBTAG00000020856	HFM1	66	75.235	Bos_taurus
ENSTGUG00000006172	HFM1	100	75.026	ENSCJAG00000001843	HFM1	67	75.026	Callithrix_jacchus
ENSTGUG00000006172	HFM1	100	75.862	ENSCAFG00000020187	HFM1	66	75.862	Canis_familiaris
ENSTGUG00000006172	HFM1	100	75.261	ENSTSYG00000014250	HFM1	67	75.261	Carlito_syrichta
ENSTGUG00000006172	HFM1	100	74.817	ENSCPOG00000007421	HFM1	68	74.817	Cavia_porcellus
ENSTGUG00000006172	HFM1	100	74.817	ENSCCAG00000033206	HFM1	67	74.817	Cebus_capucinus
ENSTGUG00000006172	HFM1	100	75.235	ENSCATG00000030987	HFM1	66	75.235	Cercocebus_atys
ENSTGUG00000006172	HFM1	100	75.235	ENSCLAG00000005173	HFM1	64	75.235	Chinchilla_lanigera
ENSTGUG00000006172	HFM1	67	85.057	ENSCHOG00000011824	-	50	85.057	Choloepus_hoffmanni
ENSTGUG00000006172	HFM1	73	54.242	ENSCSAVG00000005094	-	100	54.242	Ciona_savignyi
ENSTGUG00000006172	HFM1	97	71.429	ENSCGRG00001016995	Hfm1	66	71.033	Cricetulus_griseus_chok1gshd
ENSTGUG00000006172	HFM1	99	73.973	ENSCGRG00000017181	Hfm1	67	73.563	Cricetulus_griseus_crigri
ENSTGUG00000006172	HFM1	98	63.950	ENSCSEG00000017659	hfm1	88	63.721	Cynoglossus_semilaevis
ENSTGUG00000006172	HFM1	75	68.207	ENSCVAG00000005075	hfm1	86	68.207	Cyprinodon_variegatus
ENSTGUG00000006172	HFM1	86	67.594	ENSDARG00000104288	hfm1	75	67.594	Danio_rerio
ENSTGUG00000006172	HFM1	99	74.502	ENSDNOG00000004776	HFM1	64	74.502	Dasypus_novemcinctus
ENSTGUG00000006172	HFM1	99	73.395	ENSDORG00000014661	Hfm1	66	73.395	Dipodomys_ordii
ENSTGUG00000006172	HFM1	98	74.841	ENSEASG00005015424	HFM1	90	74.841	Equus_asinus_asinus
ENSTGUG00000006172	HFM1	100	76.594	ENSECAG00000024039	HFM1	64	76.594	Equus_caballus
ENSTGUG00000006172	HFM1	94	67.255	ENSELUG00000018944	hfm1	97	67.255	Esox_lucius
ENSTGUG00000006172	HFM1	100	76.803	ENSFCAG00000029116	HFM1	66	76.803	Felis_catus
ENSTGUG00000006172	HFM1	100	95.716	ENSFALG00000001781	HFM1	67	95.716	Ficedula_albicollis
ENSTGUG00000006172	HFM1	100	75.444	ENSFDAG00000020816	HFM1	64	75.444	Fukomys_damarensis
ENSTGUG00000006172	HFM1	99	60.290	ENSGMOG00000017436	hfm1	99	60.290	Gadus_morhua
ENSTGUG00000006172	HFM1	97	64.017	ENSGAFG00000018093	hfm1	91	65.890	Gambusia_affinis
ENSTGUG00000006172	HFM1	99	61.394	ENSGACG00000015686	hfm1	99	61.394	Gasterosteus_aculeatus
ENSTGUG00000006172	HFM1	100	75.026	ENSGGOG00000038524	HFM1	66	75.026	Gorilla_gorilla
ENSTGUG00000006172	HFM1	97	65.203	ENSHBUG00000007309	hfm1	86	65.203	Haplochromis_burtoni
ENSTGUG00000006172	HFM1	85	64.583	ENSHCOG00000019632	hfm1	97	64.583	Hippocampus_comes
ENSTGUG00000006172	HFM1	98	64.385	ENSIPUG00000017020	hfm1	92	64.657	Ictalurus_punctatus
ENSTGUG00000006172	HFM1	100	73.877	ENSJJAG00000017198	Hfm1	68	73.877	Jaculus_jaculus
ENSTGUG00000006172	HFM1	93	63.053	ENSKMAG00000002282	hfm1	90	63.053	Kryptolebias_marmoratus
ENSTGUG00000006172	HFM1	97	62.674	ENSLBEG00000006759	hfm1	95	65.417	Labrus_bergylta
ENSTGUG00000006172	HFM1	99	70.340	ENSLACG00000010698	HFM1	91	70.443	Latimeria_chalumnae
ENSTGUG00000006172	HFM1	100	67.009	ENSLOCG00000004931	hfm1	89	67.112	Lepisosteus_oculatus
ENSTGUG00000006172	HFM1	70	80.299	ENSLAFG00000015903	-	90	80.299	Loxodonta_africana
ENSTGUG00000006172	HFM1	100	72.037	ENSMFAG00000003649	HFM1	66	72.037	Macaca_fascicularis
ENSTGUG00000006172	HFM1	100	75.235	ENSMMUG00000006819	HFM1	66	75.235	Macaca_mulatta
ENSTGUG00000006172	HFM1	86	66.184	ENSMAMG00000004623	hfm1	97	66.184	Mastacembelus_armatus
ENSTGUG00000006172	HFM1	98	63.966	ENSMZEG00005004679	hfm1	95	65.939	Maylandia_zebra
ENSTGUG00000006172	HFM1	82	88.662	ENSMGAG00000008437	HFM1	97	88.662	Meleagris_gallopavo
ENSTGUG00000006172	HFM1	99	74.289	ENSMAUG00000018858	Hfm1	66	73.877	Mesocricetus_auratus
ENSTGUG00000006172	HFM1	100	74.322	ENSMICG00000037935	HFM1	66	74.322	Microcebus_murinus
ENSTGUG00000006172	HFM1	99	73.235	ENSMOCG00000014812	Hfm1	67	72.832	Microtus_ochrogaster
ENSTGUG00000006172	HFM1	93	63.229	ENSMMOG00000006148	hfm1	92	65.343	Mola_mola
ENSTGUG00000006172	HFM1	97	63.694	ENSMALG00000002401	hfm1	94	66.667	Monopterus_albus
ENSTGUG00000006172	HFM1	95	85.039	MGP_CAROLIEiJ_G0027496	Hfm1	62	85.039	Mus_caroli
ENSTGUG00000006172	HFM1	100	73.881	ENSMUSG00000043410	Hfm1	66	73.881	Mus_musculus
ENSTGUG00000006172	HFM1	100	73.877	MGP_PahariEiJ_G0017268	Hfm1	66	73.877	Mus_pahari
ENSTGUG00000006172	HFM1	100	73.772	MGP_SPRETEiJ_G0028495	Hfm1	66	73.772	Mus_spretus
ENSTGUG00000006172	HFM1	100	76.434	ENSMPUG00000004594	HFM1	64	76.434	Mustela_putorius_furo
ENSTGUG00000006172	HFM1	100	75.758	ENSMLUG00000010200	HFM1	66	75.758	Myotis_lucifugus
ENSTGUG00000006172	HFM1	97	61.135	ENSNBRG00000002910	hfm1	97	66.061	Neolamprologus_brichardi
ENSTGUG00000006172	HFM1	100	70.564	ENSNLEG00000010285	HFM1	66	70.564	Nomascus_leucogenys
ENSTGUG00000006172	HFM1	92	68.919	ENSMEUG00000015788	HFM1	61	68.919	Notamacropus_eugenii
ENSTGUG00000006172	HFM1	90	69.142	ENSOPRG00000013916	HFM1	60	69.142	Ochotona_princeps
ENSTGUG00000006172	HFM1	99	64.375	ENSONIG00000010590	hfm1	92	64.375	Oreochromis_niloticus
ENSTGUG00000006172	HFM1	85	65.233	ENSORLG00000026844	hfm1	99	65.233	Oryzias_latipes
ENSTGUG00000006172	HFM1	99	56.113	ENSORLG00020002951	hfm1	76	55.855	Oryzias_latipes_hni
ENSTGUG00000006172	HFM1	99	63.064	ENSOMEG00000016474	hfm1	66	63.064	Oryzias_melastigma
ENSTGUG00000006172	HFM1	100	74.843	ENSOGAG00000032369	HFM1	78	74.843	Otolemur_garnettii
ENSTGUG00000006172	HFM1	100	75.444	ENSOARG00000015812	HFM1	66	75.444	Ovis_aries
ENSTGUG00000006172	HFM1	100	75.340	ENSPPAG00000024582	HFM1	72	75.340	Pan_paniscus
ENSTGUG00000006172	HFM1	100	76.698	ENSPPRG00000003270	HFM1	66	76.698	Panthera_pardus
ENSTGUG00000006172	HFM1	100	76.594	ENSPTIG00000018881	HFM1	66	76.594	Panthera_tigris_altaica
ENSTGUG00000006172	HFM1	100	75.340	ENSPTRG00000000948	HFM1	66	75.340	Pan_troglodytes
ENSTGUG00000006172	HFM1	100	75.131	ENSPANG00000009838	HFM1	66	75.131	Papio_anubis
ENSTGUG00000006172	HFM1	93	67.079	ENSPKIG00000003810	hfm1	94	68.673	Paramormyrops_kingsleyae
ENSTGUG00000006172	HFM1	86	64.933	ENSPMGG00000011059	hfm1	99	64.933	Periophthalmus_magnuspinnatus
ENSTGUG00000006172	HFM1	100	74.713	ENSPEMG00000022852	Hfm1	66	74.713	Peromyscus_maniculatus_bairdii
ENSTGUG00000006172	HFM1	100	75.260	ENSPCIG00000014233	HFM1	65	75.260	Phascolarctos_cinereus
ENSTGUG00000006172	HFM1	99	63.825	ENSPFOG00000017194	hfm1	92	63.825	Poecilia_formosa
ENSTGUG00000006172	HFM1	99	64.196	ENSPLAG00000000571	hfm1	85	64.196	Poecilia_latipinna
ENSTGUG00000006172	HFM1	99	64.256	ENSPMEG00000019475	hfm1	86	64.256	Poecilia_mexicana
ENSTGUG00000006172	HFM1	97	64.278	ENSPREG00000007803	hfm1	91	65.725	Poecilia_reticulata
ENSTGUG00000006172	HFM1	100	75.131	ENSPPYG00000001163	HFM1	66	75.131	Pongo_abelii
ENSTGUG00000006172	HFM1	99	70.378	ENSPVAG00000009713	HFM1	68	70.378	Pteropus_vampyrus
ENSTGUG00000006172	HFM1	97	64.026	ENSPNYG00000001795	hfm1	95	65.939	Pundamilia_nyererei
ENSTGUG00000006172	HFM1	87	67.105	ENSPNAG00000010865	hfm1	83	67.105	Pygocentrus_nattereri
ENSTGUG00000006172	HFM1	100	73.772	ENSRNOG00000023299	Hfm1	66	73.772	Rattus_norvegicus
ENSTGUG00000006172	HFM1	100	75.131	ENSRROG00000045569	HFM1	66	75.131	Rhinopithecus_roxellana
ENSTGUG00000006172	HFM1	100	74.817	ENSSBOG00000027456	HFM1	68	74.817	Saimiri_boliviensis_boliviensis
ENSTGUG00000006172	HFM1	62	81.113	ENSSHAG00000014616	-	67	81.113	Sarcophilus_harrisii
ENSTGUG00000006172	HFM1	100	65.341	ENSSFOG00015020129	hfm1	65	65.341	Scleropages_formosus
ENSTGUG00000006172	HFM1	93	66.109	ENSSMAG00000006907	hfm1	86	66.109	Scophthalmus_maximus
ENSTGUG00000006172	HFM1	86	66.505	ENSSDUG00000011424	hfm1	93	66.505	Seriola_dumerili
ENSTGUG00000006172	HFM1	86	66.667	ENSSLDG00000016386	hfm1	92	66.667	Seriola_lalandi_dorsalis
ENSTGUG00000006172	HFM1	96	61.505	ENSSPAG00000001023	hfm1	93	66.747	Stegastes_partitus
ENSTGUG00000006172	HFM1	100	75.653	ENSSSCG00000006912	HFM1	70	75.653	Sus_scrofa
ENSTGUG00000006172	HFM1	100	74.817	ENSTTRG00000013933	HFM1	67	74.817	Tursiops_truncatus
ENSTGUG00000006172	HFM1	100	73.981	ENSVPAG00000011331	HFM1	66	73.981	Vicugna_pacos
ENSTGUG00000006172	HFM1	98	74.098	ENSVVUG00000020760	HFM1	90	74.098	Vulpes_vulpes
ENSTGUG00000006172	HFM1	85	66.339	ENSXMAG00000004178	hfm1	90	66.339	Xiphophorus_maculatus