EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000007552 (Gene tree)
Gene ID: 100224162
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 5996 bases
Position: chr14:11128075-11134070
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000007781	zf-CCCH	PF00642.24	1.8e-19	1	2
ENSTGUP00000007781	zf-CCCH	PF00642.24	1.8e-19	2	2
ENSTGUP00000007781	zf-CCHC	PF00098.23	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000007863	CPSF4-201	1299	-	ENSTGUP00000007781	245 (aa)	-	H0ZB24

Gene Model

Click here to download ENSTGUG00000007552's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03015	mRNA surveillance pathway	KEGG
tgu05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000007552's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000007552	CPSF4	100	93.902	ENSG00000160917	CPSF4	100	99.107	Homo_sapiens
ENSTGUG00000007552	CPSF4	63	68.362	ENSAPOG00000004921	cpsf4	100	68.362	Acanthochromis_polyacanthus
ENSTGUG00000007552	CPSF4	100	83.395	ENSAMEG00000006252	CPSF4	100	84.871	Ailuropoda_melanoleuca
ENSTGUG00000007552	CPSF4	100	84.898	ENSACIG00000009248	cpsf4	100	84.898	Amphilophus_citrinellus
ENSTGUG00000007552	CPSF4	100	79.401	ENSAOCG00000019616	cpsf4	100	79.401	Amphiprion_ocellaris
ENSTGUG00000007552	CPSF4	100	79.401	ENSAPEG00000011679	cpsf4	100	79.401	Amphiprion_percula
ENSTGUG00000007552	CPSF4	100	83.133	ENSATEG00000007010	cpsf4	100	83.133	Anabas_testudineus
ENSTGUG00000007552	CPSF4	100	82.288	ENSACAG00000012941	CPSF4	89	84.871	Anolis_carolinensis
ENSTGUG00000007552	CPSF4	100	83.764	ENSANAG00000021360	CPSF4	100	85.240	Aotus_nancymaae
ENSTGUG00000007552	CPSF4	100	78.776	ENSACLG00000010374	cpsf4	100	78.776	Astatotilapia_calliptera
ENSTGUG00000007552	CPSF4	100	78.309	ENSAMXG00000031647	cpsf4	100	79.779	Astyanax_mexicanus
ENSTGUG00000007552	CPSF4	100	93.878	ENSBTAG00000002090	CPSF4	100	93.878	Bos_taurus
ENSTGUG00000007552	CPSF4	100	83.764	ENSCJAG00000015826	CPSF4	100	85.240	Callithrix_jacchus
ENSTGUG00000007552	CPSF4	100	83.395	ENSCAFG00000015036	CPSF4	99	85.882	Canis_familiaris
ENSTGUG00000007552	CPSF4	100	77.491	ENSCAFG00020014462	CPSF4	100	78.967	Canis_lupus_dingo
ENSTGUG00000007552	CPSF4	100	83.395	ENSCHIG00000014313	CPSF4	100	84.871	Capra_hircus
ENSTGUG00000007552	CPSF4	100	94.309	ENSTSYG00000005712	-	100	94.309	Carlito_syrichta
ENSTGUG00000007552	CPSF4	100	85.830	ENSTSYG00000014604	-	100	85.830	Carlito_syrichta
ENSTGUG00000007552	CPSF4	88	87.156	ENSTSYG00000008195	-	99	86.784	Carlito_syrichta
ENSTGUG00000007552	CPSF4	78	81.944	ENSCAPG00000013881	CPSF4	86	83.796	Cavia_aperea
ENSTGUG00000007552	CPSF4	100	93.496	ENSCPOG00000001783	CPSF4	100	93.496	Cavia_porcellus
ENSTGUG00000007552	CPSF4	100	83.764	ENSCCAG00000028291	CPSF4	100	85.240	Cebus_capucinus
ENSTGUG00000007552	CPSF4	100	88.211	ENSCATG00000038440	CPSF4	100	88.211	Cercocebus_atys
ENSTGUG00000007552	CPSF4	100	83.395	ENSCLAG00000007050	CPSF4	100	84.871	Chinchilla_lanigera
ENSTGUG00000007552	CPSF4	100	83.764	ENSCSAG00000017795	CPSF4	100	85.240	Chlorocebus_sabaeus
ENSTGUG00000007552	CPSF4	78	86.574	ENSCPBG00000020869	CPSF4	100	86.574	Chrysemys_picta_bellii
ENSTGUG00000007552	CPSF4	69	80.357	ENSCPBG00000010269	-	100	80.357	Chrysemys_picta_bellii
ENSTGUG00000007552	CPSF4	96	55.078	ENSCING00000021080	-	97	54.688	Ciona_intestinalis
ENSTGUG00000007552	CPSF4	96	52.281	ENSCSAVG00000011469	-	97	52.281	Ciona_savignyi
ENSTGUG00000007552	CPSF4	100	86.531	ENSCANG00000019384	CPSF4	100	86.531	Colobus_angolensis_palliatus
ENSTGUG00000007552	CPSF4	100	93.496	ENSCGRG00001024184	Cpsf4	100	93.496	Cricetulus_griseus_chok1gshd
ENSTGUG00000007552	CPSF4	100	83.395	ENSCGRG00000013892	Cpsf4	100	84.871	Cricetulus_griseus_crigri
ENSTGUG00000007552	CPSF4	100	78.277	ENSCSEG00000019055	cpsf4	100	78.277	Cynoglossus_semilaevis
ENSTGUG00000007552	CPSF4	100	79.026	ENSCVAG00000016528	cpsf4	100	79.026	Cyprinodon_variegatus
ENSTGUG00000007552	CPSF4	100	76.190	ENSDARG00000020217	cpsf4	100	78.388	Danio_rerio
ENSTGUG00000007552	CPSF4	100	83.764	ENSDNOG00000006344	CPSF4	100	85.240	Dasypus_novemcinctus
ENSTGUG00000007552	CPSF4	78	81.944	ENSDORG00000000742	Cpsf4	99	83.796	Dipodomys_ordii
ENSTGUG00000007552	CPSF4	100	52.159	FBgn0015621	Clp	99	53.156	Drosophila_melanogaster
ENSTGUG00000007552	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSTGUG00000007552	CPSF4	99	71.545	ENSEBUG00000012552	cpsf4	98	71.545	Eptatretus_burgeri
ENSTGUG00000007552	CPSF4	100	93.496	ENSEASG00005002487	CPSF4	100	93.496	Equus_asinus_asinus
ENSTGUG00000007552	CPSF4	100	83.395	ENSECAG00000007525	CPSF4	100	84.871	Equus_caballus
ENSTGUG00000007552	CPSF4	60	95.652	ENSEEUG00000002158	CPSF4	73	95.652	Erinaceus_europaeus
ENSTGUG00000007552	CPSF4	100	77.737	ENSELUG00000011481	cpsf4	100	77.737	Esox_lucius
ENSTGUG00000007552	CPSF4	100	83.395	ENSFCAG00000015070	CPSF4	100	84.871	Felis_catus
ENSTGUG00000007552	CPSF4	68	56.897	ENSFALG00000012906	-	100	56.897	Ficedula_albicollis
ENSTGUG00000007552	CPSF4	100	98.776	ENSFALG00000013799	CPSF4	100	98.776	Ficedula_albicollis
ENSTGUG00000007552	CPSF4	89	82.041	ENSFDAG00000014092	CPSF4	100	83.673	Fukomys_damarensis
ENSTGUG00000007552	CPSF4	100	78.277	ENSFHEG00000010880	cpsf4	100	78.277	Fundulus_heteroclitus
ENSTGUG00000007552	CPSF4	100	81.008	ENSGMOG00000002330	cpsf4	100	81.008	Gadus_morhua
ENSTGUG00000007552	CPSF4	100	97.143	ENSGALG00000004714	CPSF4	100	97.143	Gallus_gallus
ENSTGUG00000007552	CPSF4	64	39.326	ENSGALG00000004441	-	92	39.326	Gallus_gallus
ENSTGUG00000007552	CPSF4	100	79.323	ENSGAFG00000010580	cpsf4	100	79.323	Gambusia_affinis
ENSTGUG00000007552	CPSF4	100	80.709	ENSGACG00000007792	cpsf4	100	80.709	Gasterosteus_aculeatus
ENSTGUG00000007552	CPSF4	75	76.630	ENSGAGG00000020579	-	100	76.630	Gopherus_agassizii
ENSTGUG00000007552	CPSF4	100	84.502	ENSGAGG00000021835	CPSF4	100	87.085	Gopherus_agassizii
ENSTGUG00000007552	CPSF4	100	83.764	ENSGGOG00000015131	CPSF4	100	85.240	Gorilla_gorilla
ENSTGUG00000007552	CPSF4	100	78.277	ENSHBUG00000013699	cpsf4	100	78.277	Haplochromis_burtoni
ENSTGUG00000007552	CPSF4	100	82.418	ENSHGLG00000017150	CPSF4	100	83.883	Heterocephalus_glaber_female
ENSTGUG00000007552	CPSF4	86	79.832	ENSHGLG00100009215	-	100	81.513	Heterocephalus_glaber_male
ENSTGUG00000007552	CPSF4	100	58.776	ENSHGLG00100017302	-	100	58.776	Heterocephalus_glaber_male
ENSTGUG00000007552	CPSF4	100	78.277	ENSHCOG00000004397	cpsf4	100	78.277	Hippocampus_comes
ENSTGUG00000007552	CPSF4	100	76.190	ENSIPUG00000017147	cpsf4	100	78.022	Ictalurus_punctatus
ENSTGUG00000007552	CPSF4	100	93.878	ENSSTOG00000001688	CPSF4	100	93.878	Ictidomys_tridecemlineatus
ENSTGUG00000007552	CPSF4	100	83.395	ENSJJAG00000019426	Cpsf4	100	84.871	Jaculus_jaculus
ENSTGUG00000007552	CPSF4	100	77.154	ENSKMAG00000015642	cpsf4	100	77.154	Kryptolebias_marmoratus
ENSTGUG00000007552	CPSF4	100	64.777	ENSLACG00000018470	-	100	64.777	Latimeria_chalumnae
ENSTGUG00000007552	CPSF4	100	81.985	ENSLACG00000010938	CPSF4	100	81.985	Latimeria_chalumnae
ENSTGUG00000007552	CPSF4	100	80.812	ENSLOCG00000004814	cpsf4	100	83.395	Lepisosteus_oculatus
ENSTGUG00000007552	CPSF4	100	83.026	ENSLAFG00000000159	CPSF4	100	84.502	Loxodonta_africana
ENSTGUG00000007552	CPSF4	100	86.531	ENSMFAG00000001462	CPSF4	100	95.288	Macaca_fascicularis
ENSTGUG00000007552	CPSF4	100	83.764	ENSMMUG00000019191	CPSF4	100	85.240	Macaca_mulatta
ENSTGUG00000007552	CPSF4	100	86.531	ENSMNEG00000032306	CPSF4	100	86.531	Macaca_nemestrina
ENSTGUG00000007552	CPSF4	100	88.211	ENSMLEG00000034721	CPSF4	100	88.211	Mandrillus_leucophaeus
ENSTGUG00000007552	CPSF4	100	79.554	ENSMAMG00000006244	cpsf4	100	79.554	Mastacembelus_armatus
ENSTGUG00000007552	CPSF4	100	78.277	ENSMZEG00005007515	cpsf4	100	78.277	Maylandia_zebra
ENSTGUG00000007552	CPSF4	86	96.682	ENSMGAG00000004235	CPSF4	100	96.682	Meleagris_gallopavo
ENSTGUG00000007552	CPSF4	100	83.395	ENSMAUG00000021253	Cpsf4	100	84.871	Mesocricetus_auratus
ENSTGUG00000007552	CPSF4	100	83.395	ENSMICG00000017429	CPSF4	100	84.871	Microcebus_murinus
ENSTGUG00000007552	CPSF4	100	83.395	ENSMOCG00000014901	Cpsf4	100	84.871	Microtus_ochrogaster
ENSTGUG00000007552	CPSF4	100	78.358	ENSMMOG00000001813	cpsf4	95	83.832	Mola_mola
ENSTGUG00000007552	CPSF4	100	84.871	ENSMODG00000001367	CPSF4	100	86.716	Monodelphis_domestica
ENSTGUG00000007552	CPSF4	100	79.182	ENSMALG00000012611	cpsf4	100	79.182	Monopterus_albus
ENSTGUG00000007552	CPSF4	100	93.878	MGP_CAROLIEiJ_G0028012	Cpsf4	100	93.878	Mus_caroli
ENSTGUG00000007552	CPSF4	100	93.878	ENSMUSG00000029625	Cpsf4	100	93.878	Mus_musculus
ENSTGUG00000007552	CPSF4	100	93.878	MGP_PahariEiJ_G0024581	Cpsf4	100	93.878	Mus_pahari
ENSTGUG00000007552	CPSF4	100	93.878	MGP_SPRETEiJ_G0029013	Cpsf4	100	93.878	Mus_spretus
ENSTGUG00000007552	CPSF4	100	83.395	ENSMPUG00000016508	CPSF4	100	84.871	Mustela_putorius_furo
ENSTGUG00000007552	CPSF4	86	93.839	ENSMLUG00000010980	CPSF4	100	93.839	Myotis_lucifugus
ENSTGUG00000007552	CPSF4	100	83.395	ENSNGAG00000001567	Cpsf4	100	84.871	Nannospalax_galili
ENSTGUG00000007552	CPSF4	90	77.778	ENSNBRG00000003943	cpsf4	98	77.778	Neolamprologus_brichardi
ENSTGUG00000007552	CPSF4	100	93.902	ENSNLEG00000011074	CPSF4	100	93.902	Nomascus_leucogenys
ENSTGUG00000007552	CPSF4	100	84.871	ENSMEUG00000006955	CPSF4	100	86.716	Notamacropus_eugenii
ENSTGUG00000007552	CPSF4	100	83.026	ENSOPRG00000013663	CPSF4	100	84.502	Ochotona_princeps
ENSTGUG00000007552	CPSF4	100	83.395	ENSODEG00000011181	-	100	84.871	Octodon_degus
ENSTGUG00000007552	CPSF4	100	67.681	ENSODEG00000009779	-	100	67.681	Octodon_degus
ENSTGUG00000007552	CPSF4	98	78.926	ENSODEG00000018283	-	91	78.926	Octodon_degus
ENSTGUG00000007552	CPSF4	100	78.277	ENSONIG00000008495	cpsf4	100	78.277	Oreochromis_niloticus
ENSTGUG00000007552	CPSF4	86	83.898	ENSOANG00000007729	CPSF4	100	83.898	Ornithorhynchus_anatinus
ENSTGUG00000007552	CPSF4	100	51.228	ENSOANG00000009568	-	100	51.228	Ornithorhynchus_anatinus
ENSTGUG00000007552	CPSF4	100	83.026	ENSOCUG00000002437	CPSF4	70	84.502	Oryctolagus_cuniculus
ENSTGUG00000007552	CPSF4	100	78.652	ENSORLG00000022798	cpsf4	100	78.652	Oryzias_latipes
ENSTGUG00000007552	CPSF4	100	78.652	ENSORLG00020008548	cpsf4	100	78.652	Oryzias_latipes_hni
ENSTGUG00000007552	CPSF4	100	78.277	ENSORLG00015019575	cpsf4	100	78.277	Oryzias_latipes_hsok
ENSTGUG00000007552	CPSF4	100	77.528	ENSOMEG00000005176	cpsf4	100	77.528	Oryzias_melastigma
ENSTGUG00000007552	CPSF4	100	83.395	ENSOGAG00000010884	CPSF4	100	84.871	Otolemur_garnettii
ENSTGUG00000007552	CPSF4	100	75.273	ENSOARG00000018668	CPSF4	100	75.273	Ovis_aries
ENSTGUG00000007552	CPSF4	100	83.764	ENSPPAG00000043355	CPSF4	100	85.240	Pan_paniscus
ENSTGUG00000007552	CPSF4	100	83.395	ENSPPRG00000003134	CPSF4	100	84.871	Panthera_pardus
ENSTGUG00000007552	CPSF4	89	82.787	ENSPTIG00000005604	CPSF4	90	84.426	Panthera_tigris_altaica
ENSTGUG00000007552	CPSF4	100	83.764	ENSPTRG00000019453	CPSF4	100	85.240	Pan_troglodytes
ENSTGUG00000007552	CPSF4	100	86.531	ENSPANG00000023123	CPSF4	100	86.531	Papio_anubis
ENSTGUG00000007552	CPSF4	100	80.072	ENSPKIG00000014278	cpsf4	100	80.072	Paramormyrops_kingsleyae
ENSTGUG00000007552	CPSF4	78	65.445	ENSPSIG00000018198	-	99	65.445	Pelodiscus_sinensis
ENSTGUG00000007552	CPSF4	78	86.111	ENSPSIG00000011229	CPSF4	100	86.111	Pelodiscus_sinensis
ENSTGUG00000007552	CPSF4	100	77.959	ENSPMGG00000017735	cpsf4	100	77.959	Periophthalmus_magnuspinnatus
ENSTGUG00000007552	CPSF4	100	83.395	ENSPEMG00000004508	Cpsf4	100	84.871	Peromyscus_maniculatus_bairdii
ENSTGUG00000007552	CPSF4	100	84.871	ENSPCIG00000024776	CPSF4	100	86.716	Phascolarctos_cinereus
ENSTGUG00000007552	CPSF4	100	79.323	ENSPFOG00000014912	cpsf4	100	79.323	Poecilia_formosa
ENSTGUG00000007552	CPSF4	100	79.839	ENSPLAG00000009599	cpsf4	100	79.839	Poecilia_latipinna
ENSTGUG00000007552	CPSF4	100	79.323	ENSPMEG00000009790	cpsf4	100	79.323	Poecilia_mexicana
ENSTGUG00000007552	CPSF4	100	78.571	ENSPREG00000018166	cpsf4	100	78.571	Poecilia_reticulata
ENSTGUG00000007552	CPSF4	86	82.203	ENSPPYG00000017378	CPSF4	100	83.898	Pongo_abelii
ENSTGUG00000007552	CPSF4	100	82.288	ENSPCAG00000001892	CPSF4	100	83.764	Procavia_capensis
ENSTGUG00000007552	CPSF4	100	83.395	ENSPCOG00000012771	CPSF4	100	84.871	Propithecus_coquereli
ENSTGUG00000007552	CPSF4	100	76.753	ENSPVAG00000007531	CPSF4	100	78.229	Pteropus_vampyrus
ENSTGUG00000007552	CPSF4	100	78.277	ENSPNYG00000018559	cpsf4	100	78.277	Pundamilia_nyererei
ENSTGUG00000007552	CPSF4	100	78.676	ENSPNAG00000003736	cpsf4	100	80.882	Pygocentrus_nattereri
ENSTGUG00000007552	CPSF4	100	93.878	ENSRNOG00000000985	Cpsf4	100	93.878	Rattus_norvegicus
ENSTGUG00000007552	CPSF4	86	82.627	ENSRBIG00000033886	CPSF4	100	84.322	Rhinopithecus_bieti
ENSTGUG00000007552	CPSF4	100	93.902	ENSRROG00000040431	CPSF4	100	93.902	Rhinopithecus_roxellana
ENSTGUG00000007552	CPSF4	100	83.764	ENSSBOG00000020493	CPSF4	100	95.288	Saimiri_boliviensis_boliviensis
ENSTGUG00000007552	CPSF4	100	84.871	ENSSHAG00000011533	CPSF4	100	86.716	Sarcophilus_harrisii
ENSTGUG00000007552	CPSF4	100	81.655	ENSSFOG00015007883	cpsf4	100	81.655	Scleropages_formosus
ENSTGUG00000007552	CPSF4	100	84.739	ENSSMAG00000006374	cpsf4	100	84.739	Scophthalmus_maximus
ENSTGUG00000007552	CPSF4	100	79.104	ENSSDUG00000018887	cpsf4	100	79.104	Seriola_dumerili
ENSTGUG00000007552	CPSF4	100	79.104	ENSSLDG00000019078	cpsf4	100	79.104	Seriola_lalandi_dorsalis
ENSTGUG00000007552	CPSF4	86	82.203	ENSSARG00000012416	CPSF4	100	83.898	Sorex_araneus
ENSTGUG00000007552	CPSF4	100	85.609	ENSSPUG00000003549	CPSF4	100	85.609	Sphenodon_punctatus
ENSTGUG00000007552	CPSF4	96	64.286	ENSSPUG00000014803	-	97	64.286	Sphenodon_punctatus
ENSTGUG00000007552	CPSF4	100	85.714	ENSSPAG00000006174	cpsf4	100	85.714	Stegastes_partitus
ENSTGUG00000007552	CPSF4	100	93.496	ENSSSCG00000026896	CPSF4	100	93.496	Sus_scrofa
ENSTGUG00000007552	CPSF4	100	76.981	ENSTRUG00000024220	cpsf4	100	76.981	Takifugu_rubripes
ENSTGUG00000007552	CPSF4	100	77.358	ENSTNIG00000006265	cpsf4	100	77.358	Tetraodon_nigroviridis
ENSTGUG00000007552	CPSF4	86	73.729	ENSTBEG00000011406	CPSF4	100	74.576	Tupaia_belangeri
ENSTGUG00000007552	CPSF4	82	100.000	ENSTTRG00000003007	CPSF4	100	74.908	Tursiops_truncatus
ENSTGUG00000007552	CPSF4	91	93.274	ENSUAMG00000008051	CPSF4	85	93.274	Ursus_americanus
ENSTGUG00000007552	CPSF4	100	93.878	ENSUMAG00000009474	CPSF4	100	93.878	Ursus_maritimus
ENSTGUG00000007552	CPSF4	100	93.496	ENSVVUG00000008824	CPSF4	100	93.089	Vulpes_vulpes
ENSTGUG00000007552	CPSF4	100	79.359	ENSXETG00000009892	cpsf4	100	81.851	Xenopus_tropicalis
ENSTGUG00000007552	CPSF4	99	61.111	ENSXETG00000004641	cpsf4l	99	61.111	Xenopus_tropicalis
ENSTGUG00000007552	CPSF4	100	78.947	ENSXCOG00000016040	cpsf4	100	78.947	Xiphophorus_couchianus
ENSTGUG00000007552	CPSF4	100	79.323	ENSXMAG00000024670	cpsf4	100	79.323	Xiphophorus_maculatus