EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000008498 (Gene tree)
Gene ID: 100232132
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 32883 bases
Position: chr9:11806056-11838938
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000008777	XRN_N	PF03159.18	1.6e-96	1	1
ENSTGUP00000008783	XRN_N	PF03159.18	2.4e-96	1	1
ENSTGUP00000008779	XRN_N	PF03159.18	3.3e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000008876	XRN1-203	5202	-	ENSTGUP00000008783	1734 (aa)	-	H0ZDX1
ENSTGUT00000008872	XRN1-202	5133	-	ENSTGUP00000008779	1710 (aa)	-	H0ZDW7
ENSTGUT00000008870	XRN1-201	5157	-	ENSTGUP00000008777	1718 (aa)	-	H0ZDW5

Gene Model

Click here to download ENSTGUG00000008498's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03008	Ribosome biogenesis in eukaryotes	KEGG
tgu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000008498's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000008498	XRN1	100	77.017	ENSG00000114127	XRN1	100	92.727	Homo_sapiens
ENSTGUG00000008498	XRN1	95	72.573	ENSAPOG00000000622	xrn1	99	73.083	Acanthochromis_polyacanthus
ENSTGUG00000008498	XRN1	100	76.048	ENSAMEG00000012538	XRN1	100	76.795	Ailuropoda_melanoleuca
ENSTGUG00000008498	XRN1	95	72.191	ENSACIG00000001057	xrn1	99	72.352	Amphilophus_citrinellus
ENSTGUG00000008498	XRN1	96	71.360	ENSAOCG00000014097	xrn1	100	71.280	Amphiprion_ocellaris
ENSTGUG00000008498	XRN1	100	60.828	ENSAPEG00000006620	xrn1	93	72.764	Amphiprion_percula
ENSTGUG00000008498	XRN1	95	71.691	ENSATEG00000009752	xrn1	100	71.486	Anabas_testudineus
ENSTGUG00000008498	XRN1	99	93.182	ENSAPLG00000004905	XRN1	100	93.182	Anas_platyrhynchos
ENSTGUG00000008498	XRN1	100	77.191	ENSACAG00000004985	XRN1	100	77.079	Anolis_carolinensis
ENSTGUG00000008498	XRN1	100	76.553	ENSANAG00000029013	XRN1	99	85.777	Aotus_nancymaae
ENSTGUG00000008498	XRN1	100	60.835	ENSACLG00000004806	xrn1	99	60.777	Astatotilapia_calliptera
ENSTGUG00000008498	XRN1	100	61.716	ENSAMXG00000019370	xrn1	95	92.233	Astyanax_mexicanus
ENSTGUG00000008498	XRN1	100	76.365	ENSBTAG00000011524	XRN1	100	76.713	Bos_taurus
ENSTGUG00000008498	XRN1	69	38.270	WBGene00012730	xrn-1	82	36.485	Caenorhabditis_elegans
ENSTGUG00000008498	XRN1	100	76.083	ENSCJAG00000001872	XRN1	100	76.785	Callithrix_jacchus
ENSTGUG00000008498	XRN1	100	76.335	ENSCAFG00000007783	XRN1	100	76.910	Canis_familiaris
ENSTGUG00000008498	XRN1	100	76.335	ENSCAFG00020009120	XRN1	99	85.918	Canis_lupus_dingo
ENSTGUG00000008498	XRN1	99	76.301	ENSCHIG00000019192	XRN1	99	76.705	Capra_hircus
ENSTGUG00000008498	XRN1	100	76.972	ENSTSYG00000002705	XRN1	100	77.204	Carlito_syrichta
ENSTGUG00000008498	XRN1	100	76.553	ENSCCAG00000034800	XRN1	99	88.712	Cebus_capucinus
ENSTGUG00000008498	XRN1	100	77.249	ENSCATG00000041794	XRN1	100	77.191	Cercocebus_atys
ENSTGUG00000008498	XRN1	100	75.374	ENSCLAG00000001451	XRN1	99	88.553	Chinchilla_lanigera
ENSTGUG00000008498	XRN1	100	77.249	ENSCSAG00000011265	XRN1	100	77.191	Chlorocebus_sabaeus
ENSTGUG00000008498	XRN1	61	96.104	ENSCHOG00000013961	-	62	96.104	Choloepus_hoffmanni
ENSTGUG00000008498	XRN1	70	45.419	ENSCSAVG00000008584	-	98	45.184	Ciona_savignyi
ENSTGUG00000008498	XRN1	100	77.307	ENSCANG00000037495	XRN1	99	88.712	Colobus_angolensis_palliatus
ENSTGUG00000008498	XRN1	100	75.245	ENSCGRG00001019411	Xrn1	99	88.076	Cricetulus_griseus_chok1gshd
ENSTGUG00000008498	XRN1	100	75.245	ENSCGRG00000012464	Xrn1	99	88.076	Cricetulus_griseus_crigri
ENSTGUG00000008498	XRN1	100	57.224	ENSCSEG00000021285	xrn1	94	93.269	Cynoglossus_semilaevis
ENSTGUG00000008498	XRN1	66	72.727	ENSCVAG00000013089	xrn1	99	72.551	Cyprinodon_variegatus
ENSTGUG00000008498	XRN1	100	63.352	ENSDARG00000091652	xrn1	98	80.761	Danio_rerio
ENSTGUG00000008498	XRN1	100	73.928	ENSDORG00000013833	Xrn1	100	74.786	Dipodomys_ordii
ENSTGUG00000008498	XRN1	72	39.762	FBgn0020261	pcm	74	39.520	Drosophila_melanogaster
ENSTGUG00000008498	XRN1	86	89.189	ENSETEG00000003978	XRN1	88	89.516	Echinops_telfairi
ENSTGUG00000008498	XRN1	93	84.959	ENSEASG00005002687	XRN1	99	88.235	Equus_asinus_asinus
ENSTGUG00000008498	XRN1	100	77.307	ENSECAG00000008301	XRN1	100	77.539	Equus_caballus
ENSTGUG00000008498	XRN1	92	75.122	ENSEEUG00000011323	XRN1	92	75.122	Erinaceus_europaeus
ENSTGUG00000008498	XRN1	100	61.768	ENSELUG00000000169	xrn1	100	61.993	Esox_lucius
ENSTGUG00000008498	XRN1	100	72.390	ENSFCAG00000027589	XRN1	99	89.011	Felis_catus
ENSTGUG00000008498	XRN1	100	95.871	ENSFALG00000007021	XRN1	100	95.871	Ficedula_albicollis
ENSTGUG00000008498	XRN1	100	75.243	ENSFDAG00000020494	XRN1	99	87.917	Fukomys_damarensis
ENSTGUG00000008498	XRN1	84	67.993	ENSGMOG00000006396	xrn1	84	67.910	Gadus_morhua
ENSTGUG00000008498	XRN1	100	90.361	ENSGALG00000002706	XRN1	100	90.361	Gallus_gallus
ENSTGUG00000008498	XRN1	100	60.716	ENSGACG00000014328	xrn1	100	60.692	Gasterosteus_aculeatus
ENSTGUG00000008498	XRN1	95	86.468	ENSGAGG00000017535	XRN1	99	86.468	Gopherus_agassizii
ENSTGUG00000008498	XRN1	100	77.249	ENSGGOG00000008047	XRN1	100	77.191	Gorilla_gorilla
ENSTGUG00000008498	XRN1	95	70.929	ENSHBUG00000005908	xrn1	98	73.402	Haplochromis_burtoni
ENSTGUG00000008498	XRN1	100	76.329	ENSHGLG00000014476	XRN1	99	88.553	Heterocephalus_glaber_female
ENSTGUG00000008498	XRN1	100	76.387	ENSHGLG00100015130	XRN1	99	88.553	Heterocephalus_glaber_male
ENSTGUG00000008498	XRN1	96	70.833	ENSHCOG00000014062	xrn1	99	70.991	Hippocampus_comes
ENSTGUG00000008498	XRN1	100	62.182	ENSIPUG00000015229	xrn1	100	62.272	Ictalurus_punctatus
ENSTGUG00000008498	XRN1	100	76.444	ENSSTOG00000013552	XRN1	99	88.235	Ictidomys_tridecemlineatus
ENSTGUG00000008498	XRN1	99	74.767	ENSJJAG00000010863	Xrn1	99	85.484	Jaculus_jaculus
ENSTGUG00000008498	XRN1	100	58.992	ENSKMAG00000021356	xrn1	94	73.251	Kryptolebias_marmoratus
ENSTGUG00000008498	XRN1	100	60.362	ENSLBEG00000018656	xrn1	97	94.175	Labrus_bergylta
ENSTGUG00000008498	XRN1	100	72.000	ENSLACG00000009020	XRN1	100	72.057	Latimeria_chalumnae
ENSTGUG00000008498	XRN1	100	65.921	ENSLOCG00000007944	xrn1	100	65.921	Lepisosteus_oculatus
ENSTGUG00000008498	XRN1	62	85.300	ENSLAFG00000015426	XRN1	100	85.300	Loxodonta_africana
ENSTGUG00000008498	XRN1	100	77.249	ENSMFAG00000032599	XRN1	100	77.191	Macaca_fascicularis
ENSTGUG00000008498	XRN1	100	77.249	ENSMMUG00000014038	XRN1	100	77.191	Macaca_mulatta
ENSTGUG00000008498	XRN1	100	77.075	ENSMNEG00000034217	XRN1	100	77.017	Macaca_nemestrina
ENSTGUG00000008498	XRN1	93	71.417	ENSMAMG00000013219	xrn1	98	72.266	Mastacembelus_armatus
ENSTGUG00000008498	XRN1	100	60.779	ENSMZEG00005015099	xrn1	99	60.482	Maylandia_zebra
ENSTGUG00000008498	XRN1	99	90.215	ENSMGAG00000006333	XRN1	100	90.215	Meleagris_gallopavo
ENSTGUG00000008498	XRN1	100	76.852	ENSMICG00000048948	XRN1	96	94.175	Microcebus_murinus
ENSTGUG00000008498	XRN1	57	88.076	ENSMOCG00000008665	Xrn1	99	87.758	Microtus_ochrogaster
ENSTGUG00000008498	XRN1	100	77.726	ENSMODG00000021236	XRN1	100	78.074	Monodelphis_domestica
ENSTGUG00000008498	XRN1	94	67.213	ENSMALG00000004098	xrn1	98	67.291	Monopterus_albus
ENSTGUG00000008498	XRN1	100	68.685	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSTGUG00000008498	XRN1	100	74.264	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSTGUG00000008498	XRN1	100	74.812	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSTGUG00000008498	XRN1	100	74.207	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSTGUG00000008498	XRN1	100	76.655	ENSMPUG00000012040	XRN1	100	77.294	Mustela_putorius_furo
ENSTGUG00000008498	XRN1	100	76.007	ENSMLUG00000016885	XRN1	100	75.949	Myotis_lucifugus
ENSTGUG00000008498	XRN1	57	82.166	ENSNGAG00000023964	Xrn1	99	83.121	Nannospalax_galili
ENSTGUG00000008498	XRN1	100	76.843	ENSNLEG00000004726	XRN1	100	76.959	Nomascus_leucogenys
ENSTGUG00000008498	XRN1	72	94.845	ENSMEUG00000014473	-	72	95.146	Notamacropus_eugenii
ENSTGUG00000008498	XRN1	79	75.641	ENSOPRG00000007337	-	78	76.763	Ochotona_princeps
ENSTGUG00000008498	XRN1	100	61.355	ENSONIG00000016673	xrn1	99	64.437	Oreochromis_niloticus
ENSTGUG00000008498	XRN1	92	74.953	ENSOANG00000006735	XRN1	100	75.393	Ornithorhynchus_anatinus
ENSTGUG00000008498	XRN1	100	75.696	ENSOCUG00000001861	XRN1	100	75.725	Oryctolagus_cuniculus
ENSTGUG00000008498	XRN1	94	72.125	ENSORLG00000013005	xrn1	100	60.476	Oryzias_latipes
ENSTGUG00000008498	XRN1	94	73.027	ENSORLG00020005559	xrn1	97	72.625	Oryzias_latipes_hni
ENSTGUG00000008498	XRN1	100	61.263	ENSORLG00015022523	xrn1	97	72.383	Oryzias_latipes_hsok
ENSTGUG00000008498	XRN1	93	72.830	ENSOMEG00000015397	xrn1	99	73.426	Oryzias_melastigma
ENSTGUG00000008498	XRN1	100	74.594	ENSOGAG00000000170	XRN1	100	74.927	Otolemur_garnettii
ENSTGUG00000008498	XRN1	99	76.672	ENSOARG00000006343	XRN1	99	76.963	Ovis_aries
ENSTGUG00000008498	XRN1	100	76.767	ENSPPAG00000010180	XRN1	100	77.307	Pan_paniscus
ENSTGUG00000008498	XRN1	100	76.682	ENSPPRG00000007125	XRN1	100	77.204	Panthera_pardus
ENSTGUG00000008498	XRN1	100	76.682	ENSPTIG00000021081	XRN1	100	77.204	Panthera_tigris_altaica
ENSTGUG00000008498	XRN1	100	76.825	ENSPTRG00000015482	XRN1	100	77.365	Pan_troglodytes
ENSTGUG00000008498	XRN1	100	77.191	ENSPANG00000010638	XRN1	100	77.133	Papio_anubis
ENSTGUG00000008498	XRN1	100	84.563	ENSPSIG00000018050	XRN1	100	84.334	Pelodiscus_sinensis
ENSTGUG00000008498	XRN1	56	76.025	ENSPMGG00000002648	xrn1	98	78.025	Periophthalmus_magnuspinnatus
ENSTGUG00000008498	XRN1	57	88.076	ENSPEMG00000020610	Xrn1	99	87.758	Peromyscus_maniculatus_bairdii
ENSTGUG00000008498	XRN1	65	50.717	ENSPMAG00000002975	xrn1	92	77.011	Petromyzon_marinus
ENSTGUG00000008498	XRN1	100	78.596	ENSPCIG00000028735	XRN1	99	89.172	Phascolarctos_cinereus
ENSTGUG00000008498	XRN1	91	65.010	ENSPFOG00000013932	xrn1	99	65.038	Poecilia_formosa
ENSTGUG00000008498	XRN1	91	64.345	ENSPLAG00000021653	xrn1	99	64.569	Poecilia_latipinna
ENSTGUG00000008498	XRN1	89	63.735	ENSPMEG00000003076	xrn1	95	64.929	Poecilia_mexicana
ENSTGUG00000008498	XRN1	100	61.252	ENSPREG00000021147	xrn1	100	61.383	Poecilia_reticulata
ENSTGUG00000008498	XRN1	100	76.959	ENSPPYG00000014172	XRN1	100	76.901	Pongo_abelii
ENSTGUG00000008498	XRN1	83	78.092	ENSPCAG00000005638	XRN1	93	77.832	Procavia_capensis
ENSTGUG00000008498	XRN1	100	76.959	ENSPCOG00000013089	XRN1	99	88.871	Propithecus_coquereli
ENSTGUG00000008498	XRN1	96	82.654	ENSPVAG00000016265	XRN1	96	82.654	Pteropus_vampyrus
ENSTGUG00000008498	XRN1	94	71.508	ENSPNYG00000010570	xrn1	99	71.611	Pundamilia_nyererei
ENSTGUG00000008498	XRN1	100	61.092	ENSPNAG00000023531	xrn1	100	61.287	Pygocentrus_nattereri
ENSTGUG00000008498	XRN1	100	74.986	ENSRNOG00000042951	Xrn1	100	75.100	Rattus_norvegicus
ENSTGUG00000008498	XRN1	100	77.151	ENSRBIG00000041227	XRN1	100	77.093	Rhinopithecus_bieti
ENSTGUG00000008498	XRN1	66	54.768	YGL173C	XRN1	73	54.768	Saccharomyces_cerevisiae
ENSTGUG00000008498	XRN1	100	76.262	ENSSBOG00000029561	XRN1	100	76.494	Saimiri_boliviensis_boliviensis
ENSTGUG00000008498	XRN1	99	78.143	ENSSHAG00000016207	XRN1	100	78.496	Sarcophilus_harrisii
ENSTGUG00000008498	XRN1	100	62.179	ENSSFOG00015024211	xrn1	100	61.811	Scleropages_formosus
ENSTGUG00000008498	XRN1	94	70.830	ENSSMAG00000016534	xrn1	97	72.146	Scophthalmus_maximus
ENSTGUG00000008498	XRN1	90	71.671	ENSSDUG00000010306	xrn1	97	72.074	Seriola_dumerili
ENSTGUG00000008498	XRN1	97	68.370	ENSSLDG00000021543	xrn1	100	69.266	Seriola_lalandi_dorsalis
ENSTGUG00000008498	XRN1	68	77.536	ENSSARG00000007741	-	83	77.536	Sorex_araneus
ENSTGUG00000008498	XRN1	94	69.810	ENSTRUG00000004895	xrn1	99	75.934	Takifugu_rubripes
ENSTGUG00000008498	XRN1	96	68.878	ENSTNIG00000017615	xrn1	94	69.031	Tetraodon_nigroviridis
ENSTGUG00000008498	XRN1	85	91.375	ENSTBEG00000003256	XRN1	84	91.375	Tupaia_belangeri
ENSTGUG00000008498	XRN1	100	72.896	ENSTTRG00000012914	XRN1	100	73.186	Tursiops_truncatus
ENSTGUG00000008498	XRN1	100	75.174	ENSUAMG00000001608	XRN1	99	84.420	Ursus_americanus
ENSTGUG00000008498	XRN1	100	76.856	ENSUMAG00000013625	XRN1	100	77.436	Ursus_maritimus
ENSTGUG00000008498	XRN1	100	73.504	ENSVPAG00000004690	XRN1	100	74.027	Vicugna_pacos
ENSTGUG00000008498	XRN1	100	76.611	ENSVVUG00000024461	XRN1	99	88.871	Vulpes_vulpes
ENSTGUG00000008498	XRN1	100	69.878	ENSXETG00000000619	xrn1	97	87.903	Xenopus_tropicalis
ENSTGUG00000008498	XRN1	93	72.565	ENSXCOG00000007917	xrn1	100	67.273	Xiphophorus_couchianus
ENSTGUG00000008498	XRN1	92	71.916	ENSXMAG00000018320	xrn1	98	72.913	Xiphophorus_maculatus