EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000008797 (Gene tree)
Gene ID: 100222776
Gene Symbol: RAB20
Alias: FLJ20429
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 28527 bases
Position: chr1:24564245-24592771
Accession: 100222776
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000009057	MMR_HSR1	PF01926.23	4.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000009154	RAB20-201	693	XM_002189500	ENSTGUP00000009057	230 (aa)	XP_002189536	H0ZEP5

Gene Model

Click here to download ENSTGUG00000008797's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000008797's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000008797	RAB20	81	30.151	ENSTGUG00000007832	RAB7A	77	30.151
ENSTGUG00000008797	RAB20	53	33.333	ENSTGUG00000003675	RAB25	59	33.333
ENSTGUG00000008797	RAB20	57	37.226	ENSTGUG00000009279	RAB11A	63	37.226
ENSTGUG00000008797	RAB20	52	35.433	ENSTGUG00000002436	RAB33B	56	35.433
ENSTGUG00000008797	RAB20	53	30.159	ENSTGUG00000011182	RAB2A	59	30.159
ENSTGUG00000008797	RAB20	56	38.235	ENSTGUG00000003680	-	67	38.235
ENSTGUG00000008797	RAB20	70	33.140	ENSTGUG00000000084	-	78	33.140
ENSTGUG00000008797	RAB20	51	33.600	ENSTGUG00000005228	RAB33A	61	33.600
ENSTGUG00000008797	RAB20	50	36.364	ENSTGUG00000009985	-	51	36.364

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000008797	RAB20	99	61.089	ENSATEG00000011117	rab20	100	61.089	Anabas_testudineus
ENSTGUG00000008797	RAB20	100	95.652	ENSAPLG00000011744	RAB20	100	95.652	Anas_platyrhynchos
ENSTGUG00000008797	RAB20	99	77.922	ENSACAG00000014045	RAB20	99	77.922	Anolis_carolinensis
ENSTGUG00000008797	RAB20	100	60.324	ENSAMXG00000003504	rab20	100	60.163	Astyanax_mexicanus
ENSTGUG00000008797	RAB20	99	83.621	ENSCPBG00000005866	RAB20	99	83.621	Chrysemys_picta_bellii
ENSTGUG00000008797	RAB20	99	66.949	ENSCSEG00000011160	rab20	100	66.949	Cynoglossus_semilaevis
ENSTGUG00000008797	RAB20	99	67.511	ENSDARG00000005049	rab20	97	67.511	Danio_rerio
ENSTGUG00000008797	RAB20	99	61.719	ENSELUG00000004092	rab20	98	61.719	Esox_lucius
ENSTGUG00000008797	RAB20	100	98.261	ENSFALG00000004409	RAB20	100	98.261	Ficedula_albicollis
ENSTGUG00000008797	RAB20	99	66.102	ENSGACG00000003527	rab20	100	66.102	Gasterosteus_aculeatus
ENSTGUG00000008797	RAB20	99	59.289	ENSHCOG00000013468	rab20	98	59.289	Hippocampus_comes
ENSTGUG00000008797	RAB20	100	67.511	ENSIPUG00000000432	RAB20	97	67.511	Ictalurus_punctatus
ENSTGUG00000008797	RAB20	100	67.511	ENSIPUG00000018288	RAB20	97	67.511	Ictalurus_punctatus
ENSTGUG00000008797	RAB20	99	70.690	ENSLACG00000011001	RAB20	99	70.690	Latimeria_chalumnae
ENSTGUG00000008797	RAB20	99	62.109	ENSMAMG00000015214	rab20	98	62.109	Mastacembelus_armatus
ENSTGUG00000008797	RAB20	99	64.286	ENSMMOG00000020022	rab20	100	64.286	Mola_mola
ENSTGUG00000008797	RAB20	99	76.395	ENSMEUG00000009442	RAB20	99	76.395	Notamacropus_eugenii
ENSTGUG00000008797	RAB20	86	50.476	ENSPMAG00000004439	rab20	99	51.163	Petromyzon_marinus
ENSTGUG00000008797	RAB20	99	64.167	ENSPNAG00000008867	rab20	99	64.167	Pygocentrus_nattereri
ENSTGUG00000008797	RAB20	99	61.569	ENSSMAG00000018818	rab20	100	61.569	Scophthalmus_maximus
ENSTGUG00000008797	RAB20	99	63.035	ENSSDUG00000005148	rab20	98	63.035	Seriola_dumerili
ENSTGUG00000008797	RAB20	99	61.089	ENSTRUG00000022951	rab20	98	61.089	Takifugu_rubripes
ENSTGUG00000008797	RAB20	94	64.253	ENSTNIG00000013920	rab20	100	62.979	Tetraodon_nigroviridis