EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000010553 (Gene tree)
Gene ID: 100230975
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Plus strand
Length: 23527 bases
Position: chr7:23337869-23361395
Accession: 100230975
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000010893	SF3b1	PF08920.10	4.3e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000011006	SF3B1-201	4350	XM_002192639	ENSTGUP00000010893	1301 (aa)	XP_002192675	H0ZJX4

Gene Model

Click here to download ENSTGUG00000010553's gene model file

Pathways

Pathway ID	Pathway Name	Source
tgu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000010553's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000010553	SF3B1	100	99.310	ENSG00000115524	SF3B1	100	99.310	Homo_sapiens
ENSTGUG00000010553	SF3B1	100	93.840	ENSAPOG00000011894	sf3b1	100	93.840	Acanthochromis_polyacanthus
ENSTGUG00000010553	SF3B1	99	99.228	ENSAMEG00000013809	SF3B1	99	99.228	Ailuropoda_melanoleuca
ENSTGUG00000010553	SF3B1	100	93.282	ENSACIG00000020910	sf3b1	97	93.282	Amphilophus_citrinellus
ENSTGUG00000010553	SF3B1	100	93.840	ENSAOCG00000004478	sf3b1	100	93.840	Amphiprion_ocellaris
ENSTGUG00000010553	SF3B1	100	93.840	ENSAPEG00000012937	sf3b1	100	93.840	Amphiprion_percula
ENSTGUG00000010553	SF3B1	100	93.988	ENSATEG00000020435	sf3b1	100	93.988	Anabas_testudineus
ENSTGUG00000010553	SF3B1	99	99.923	ENSAPLG00000003993	SF3B1	99	99.923	Anas_platyrhynchos
ENSTGUG00000010553	SF3B1	100	98.925	ENSACAG00000009612	SF3B1	100	98.925	Anolis_carolinensis
ENSTGUG00000010553	SF3B1	100	99.310	ENSANAG00000021577	SF3B1	100	99.655	Aotus_nancymaae
ENSTGUG00000010553	SF3B1	100	92.922	ENSACLG00000023470	sf3b1	100	92.922	Astatotilapia_calliptera
ENSTGUG00000010553	SF3B1	100	94.068	ENSAMXG00000002219	sf3b1	100	94.068	Astyanax_mexicanus
ENSTGUG00000010553	SF3B1	100	99.233	ENSBTAG00000008915	SF3B1	100	99.233	Bos_taurus
ENSTGUG00000010553	SF3B1	98	66.642	WBGene00011605	sftb-1	98	66.717	Caenorhabditis_elegans
ENSTGUG00000010553	SF3B1	100	99.310	ENSCJAG00000003902	SF3B1	100	99.310	Callithrix_jacchus
ENSTGUG00000010553	SF3B1	100	99.310	ENSCAFG00000010826	SF3B1	100	99.310	Canis_familiaris
ENSTGUG00000010553	SF3B1	100	99.310	ENSCAFG00020004750	SF3B1	100	99.310	Canis_lupus_dingo
ENSTGUG00000010553	SF3B1	100	99.233	ENSCHIG00000015226	SF3B1	100	99.233	Capra_hircus
ENSTGUG00000010553	SF3B1	100	99.233	ENSTSYG00000009214	SF3B1	100	99.233	Carlito_syrichta
ENSTGUG00000010553	SF3B1	99	99.154	ENSCAPG00000006547	SF3B1	99	99.154	Cavia_aperea
ENSTGUG00000010553	SF3B1	99	99.304	ENSCPOG00000009353	SF3B1	100	99.304	Cavia_porcellus
ENSTGUG00000010553	SF3B1	100	99.310	ENSCCAG00000020506	SF3B1	100	99.310	Cebus_capucinus
ENSTGUG00000010553	SF3B1	100	99.310	ENSCATG00000035735	SF3B1	100	99.310	Cercocebus_atys
ENSTGUG00000010553	SF3B1	99	99.305	ENSCLAG00000014767	SF3B1	99	99.305	Chinchilla_lanigera
ENSTGUG00000010553	SF3B1	100	99.310	ENSCSAG00000011505	SF3B1	100	99.310	Chlorocebus_sabaeus
ENSTGUG00000010553	SF3B1	76	96.923	ENSCHOG00000009860	SF3B1	76	96.923	Choloepus_hoffmanni
ENSTGUG00000010553	SF3B1	100	99.462	ENSCPBG00000021902	SF3B1	100	99.576	Chrysemys_picta_bellii
ENSTGUG00000010553	SF3B1	68	78.084	ENSCING00000002558	-	100	78.414	Ciona_intestinalis
ENSTGUG00000010553	SF3B1	99	79.757	ENSCSAVG00000002559	-	99	79.606	Ciona_savignyi
ENSTGUG00000010553	SF3B1	100	99.310	ENSCANG00000029415	SF3B1	100	99.310	Colobus_angolensis_palliatus
ENSTGUG00000010553	SF3B1	100	99.310	ENSCGRG00001016990	Sf3b1	100	99.310	Cricetulus_griseus_chok1gshd
ENSTGUG00000010553	SF3B1	100	99.310	ENSCGRG00000005301	Sf3b1	100	99.310	Cricetulus_griseus_crigri
ENSTGUG00000010553	SF3B1	100	90.076	ENSCSEG00000003860	sf3b1	100	90.076	Cynoglossus_semilaevis
ENSTGUG00000010553	SF3B1	96	93.903	ENSCVAG00000003680	sf3b1	99	93.903	Cyprinodon_variegatus
ENSTGUG00000010553	SF3B1	100	93.688	ENSDARG00000056138	sf3b1	100	93.688	Danio_rerio
ENSTGUG00000010553	SF3B1	100	99.234	ENSDNOG00000011754	SF3B1	100	99.234	Dasypus_novemcinctus
ENSTGUG00000010553	SF3B1	99	96.832	ENSDORG00000002399	Sf3b1	100	96.832	Dipodomys_ordii
ENSTGUG00000010553	SF3B1	100	76.583	FBgn0031266	Sf3b1	100	76.583	Drosophila_melanogaster
ENSTGUG00000010553	SF3B1	83	98.609	ENSETEG00000009188	SF3B1	100	98.609	Echinops_telfairi
ENSTGUG00000010553	SF3B1	99	87.692	ENSEBUG00000004325	sf3b1	100	90.174	Eptatretus_burgeri
ENSTGUG00000010553	SF3B1	100	99.310	ENSEASG00005020159	SF3B1	98	99.310	Equus_asinus_asinus
ENSTGUG00000010553	SF3B1	100	99.310	ENSECAG00000021657	SF3B1	98	99.310	Equus_caballus
ENSTGUG00000010553	SF3B1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSTGUG00000010553	SF3B1	100	92.825	ENSELUG00000005977	sf3b1	98	93.051	Esox_lucius
ENSTGUG00000010553	SF3B1	100	99.310	ENSFCAG00000005038	SF3B1	100	99.310	Felis_catus
ENSTGUG00000010553	SF3B1	99	99.845	ENSFALG00000004281	SF3B1	99	99.845	Ficedula_albicollis
ENSTGUG00000010553	SF3B1	100	99.310	ENSFDAG00000017510	SF3B1	100	99.310	Fukomys_damarensis
ENSTGUG00000010553	SF3B1	100	93.004	ENSFHEG00000014333	sf3b1	100	93.004	Fundulus_heteroclitus
ENSTGUG00000010553	SF3B1	100	93.445	ENSGMOG00000006773	sf3b1	100	93.445	Gadus_morhua
ENSTGUG00000010553	SF3B1	100	99.923	ENSGALG00000008038	SF3B1	100	99.923	Gallus_gallus
ENSTGUG00000010553	SF3B1	98	94.315	ENSGAFG00000000704	sf3b1	99	94.315	Gambusia_affinis
ENSTGUG00000010553	SF3B1	100	93.064	ENSGACG00000008839	sf3b1	100	93.521	Gasterosteus_aculeatus
ENSTGUG00000010553	SF3B1	100	98.779	ENSGAGG00000017478	SF3B1	100	98.779	Gopherus_agassizii
ENSTGUG00000010553	SF3B1	99	92.479	ENSGGOG00000009264	SF3B1	99	93.687	Gorilla_gorilla
ENSTGUG00000010553	SF3B1	99	92.988	ENSHBUG00000007705	sf3b1	99	92.988	Haplochromis_burtoni
ENSTGUG00000010553	SF3B1	99	99.305	ENSHGLG00000008285	-	99	99.305	Heterocephalus_glaber_female
ENSTGUG00000010553	SF3B1	99	97.297	ENSHGLG00100005535	-	99	97.297	Heterocephalus_glaber_male
ENSTGUG00000010553	SF3B1	100	92.965	ENSHCOG00000016775	sf3b1	100	93.041	Hippocampus_comes
ENSTGUG00000010553	SF3B1	100	94.064	ENSIPUG00000013171	sf3b1	100	94.064	Ictalurus_punctatus
ENSTGUG00000010553	SF3B1	100	99.310	ENSSTOG00000011034	SF3B1	100	99.310	Ictidomys_tridecemlineatus
ENSTGUG00000010553	SF3B1	99	99.225	ENSJJAG00000010903	Sf3b1	99	99.225	Jaculus_jaculus
ENSTGUG00000010553	SF3B1	100	93.096	ENSKMAG00000004009	sf3b1	100	93.171	Kryptolebias_marmoratus
ENSTGUG00000010553	SF3B1	100	93.578	ENSLBEG00000022208	sf3b1	100	93.578	Labrus_bergylta
ENSTGUG00000010553	SF3B1	99	92.715	ENSLACG00000014832	SF3B1	99	92.715	Latimeria_chalumnae
ENSTGUG00000010553	SF3B1	100	94.913	ENSLOCG00000003899	sf3b1	100	94.913	Lepisosteus_oculatus
ENSTGUG00000010553	SF3B1	100	99.310	ENSLAFG00000001956	SF3B1	100	99.310	Loxodonta_africana
ENSTGUG00000010553	SF3B1	99	99.305	ENSMMUG00000022430	SF3B1	99	99.305	Macaca_mulatta
ENSTGUG00000010553	SF3B1	100	99.310	ENSMNEG00000042333	SF3B1	100	99.655	Macaca_nemestrina
ENSTGUG00000010553	SF3B1	94	93.095	ENSMLEG00000026141	SF3B1	99	93.387	Mandrillus_leucophaeus
ENSTGUG00000010553	SF3B1	100	93.988	ENSMAMG00000010241	sf3b1	100	93.988	Mastacembelus_armatus
ENSTGUG00000010553	SF3B1	100	92.922	ENSMZEG00005021254	sf3b1	100	92.922	Maylandia_zebra
ENSTGUG00000010553	SF3B1	99	99.303	ENSMGAG00000007017	SF3B1	99	99.303	Meleagris_gallopavo
ENSTGUG00000010553	SF3B1	99	94.903	ENSMAUG00000009071	Sf3b1	99	95.058	Mesocricetus_auratus
ENSTGUG00000010553	SF3B1	100	99.233	ENSMICG00000013879	SF3B1	100	99.233	Microcebus_murinus
ENSTGUG00000010553	SF3B1	99	94.830	ENSMOCG00000000455	Sf3b1	99	94.830	Microtus_ochrogaster
ENSTGUG00000010553	SF3B1	83	93.321	ENSMMOG00000000475	sf3b1	100	93.321	Mola_mola
ENSTGUG00000010553	SF3B1	100	98.926	ENSMODG00000012275	SF3B1	100	98.926	Monodelphis_domestica
ENSTGUG00000010553	SF3B1	100	93.836	ENSMALG00000017211	sf3b1	100	93.836	Monopterus_albus
ENSTGUG00000010553	SF3B1	100	99.310	MGP_CAROLIEiJ_G0014141	Sf3b1	100	99.310	Mus_caroli
ENSTGUG00000010553	SF3B1	100	99.310	ENSMUSG00000025982	Sf3b1	100	99.310	Mus_musculus
ENSTGUG00000010553	SF3B1	100	99.310	MGP_SPRETEiJ_G0014947	Sf3b1	100	99.310	Mus_spretus
ENSTGUG00000010553	SF3B1	100	99.310	ENSMPUG00000007799	SF3B1	100	99.310	Mustela_putorius_furo
ENSTGUG00000010553	SF3B1	100	98.083	ENSMLUG00000000840	SF3B1	100	98.083	Myotis_lucifugus
ENSTGUG00000010553	SF3B1	99	99.000	ENSNGAG00000021884	-	100	99.000	Nannospalax_galili
ENSTGUG00000010553	SF3B1	100	89.169	ENSNBRG00000015816	sf3b1	100	89.169	Neolamprologus_brichardi
ENSTGUG00000010553	SF3B1	100	99.310	ENSNLEG00000006861	SF3B1	100	99.310	Nomascus_leucogenys
ENSTGUG00000010553	SF3B1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSTGUG00000010553	SF3B1	100	86.257	ENSOPRG00000008596	SF3B1	100	86.257	Ochotona_princeps
ENSTGUG00000010553	SF3B1	100	99.310	ENSODEG00000011153	-	100	99.310	Octodon_degus
ENSTGUG00000010553	SF3B1	100	92.922	ENSONIG00000013758	sf3b1	100	92.922	Oreochromis_niloticus
ENSTGUG00000010553	SF3B1	83	98.801	ENSOCUG00000012722	-	96	98.801	Oryctolagus_cuniculus
ENSTGUG00000010553	SF3B1	100	93.455	ENSORLG00000020219	sf3b1	100	93.455	Oryzias_latipes
ENSTGUG00000010553	SF3B1	100	93.455	ENSORLG00020001746	sf3b1	100	93.455	Oryzias_latipes_hni
ENSTGUG00000010553	SF3B1	64	91.169	ENSORLG00015001759	sf3b1	98	91.169	Oryzias_latipes_hsok
ENSTGUG00000010553	SF3B1	100	93.612	ENSOMEG00000019231	sf3b1	100	93.612	Oryzias_melastigma
ENSTGUG00000010553	SF3B1	100	99.233	ENSOARG00000015374	SF3B1	100	99.233	Ovis_aries
ENSTGUG00000010553	SF3B1	100	99.310	ENSPPAG00000035007	SF3B1	100	99.310	Pan_paniscus
ENSTGUG00000010553	SF3B1	100	99.310	ENSPPRG00000009090	SF3B1	100	99.310	Panthera_pardus
ENSTGUG00000010553	SF3B1	100	99.310	ENSPTIG00000021557	SF3B1	100	99.310	Panthera_tigris_altaica
ENSTGUG00000010553	SF3B1	99	90.608	ENSPTRG00000012771	SF3B1	99	90.762	Pan_troglodytes
ENSTGUG00000010553	SF3B1	100	99.310	ENSPANG00000013417	SF3B1	100	99.310	Papio_anubis
ENSTGUG00000010553	SF3B1	100	95.050	ENSPKIG00000000784	sf3b1	100	95.050	Paramormyrops_kingsleyae
ENSTGUG00000010553	SF3B1	99	98.218	ENSPSIG00000017222	SF3B1	98	98.218	Pelodiscus_sinensis
ENSTGUG00000010553	SF3B1	90	94.093	ENSPMGG00000004330	sf3b1	99	94.093	Periophthalmus_magnuspinnatus
ENSTGUG00000010553	SF3B1	99	99.305	ENSPEMG00000010699	Sf3b1	100	99.305	Peromyscus_maniculatus_bairdii
ENSTGUG00000010553	SF3B1	100	90.183	ENSPMAG00000001311	sf3b1	100	90.335	Petromyzon_marinus
ENSTGUG00000010553	SF3B1	100	98.849	ENSPCIG00000010642	SF3B1	100	98.849	Phascolarctos_cinereus
ENSTGUG00000010553	SF3B1	100	93.693	ENSPFOG00000000073	sf3b1	100	93.693	Poecilia_formosa
ENSTGUG00000010553	SF3B1	100	93.764	ENSPLAG00000002293	sf3b1	100	93.764	Poecilia_latipinna
ENSTGUG00000010553	SF3B1	100	93.764	ENSPMEG00000000446	sf3b1	98	93.764	Poecilia_mexicana
ENSTGUG00000010553	SF3B1	100	93.840	ENSPREG00000019652	sf3b1	100	93.840	Poecilia_reticulata
ENSTGUG00000010553	SF3B1	100	98.631	ENSPPYG00000013044	SF3B1	96	98.631	Pongo_abelii
ENSTGUG00000010553	SF3B1	100	99.156	ENSPCAG00000009292	SF3B1	100	99.156	Procavia_capensis
ENSTGUG00000010553	SF3B1	100	99.233	ENSPCOG00000024074	SF3B1	100	99.233	Propithecus_coquereli
ENSTGUG00000010553	SF3B1	100	99.310	ENSPVAG00000008302	SF3B1	100	99.310	Pteropus_vampyrus
ENSTGUG00000010553	SF3B1	100	92.846	ENSPNYG00000014939	sf3b1	100	92.846	Pundamilia_nyererei
ENSTGUG00000010553	SF3B1	100	93.992	ENSPNAG00000008288	sf3b1	100	94.068	Pygocentrus_nattereri
ENSTGUG00000010553	SF3B1	100	99.310	ENSRNOG00000013516	Sf3b1	100	99.310	Rattus_norvegicus
ENSTGUG00000010553	SF3B1	99	95.545	ENSRBIG00000026096	SF3B1	100	95.545	Rhinopithecus_bieti
ENSTGUG00000010553	SF3B1	100	99.310	ENSRROG00000031308	SF3B1	100	99.310	Rhinopithecus_roxellana
ENSTGUG00000010553	SF3B1	100	99.310	ENSSBOG00000020080	SF3B1	100	99.310	Saimiri_boliviensis_boliviensis
ENSTGUG00000010553	SF3B1	100	98.926	ENSSHAG00000017564	SF3B1	100	98.926	Sarcophilus_harrisii
ENSTGUG00000010553	SF3B1	100	94.829	ENSSFOG00015021535	sf3b1	100	94.981	Scleropages_formosus
ENSTGUG00000010553	SF3B1	99	92.944	ENSSMAG00000013977	sf3b1	99	93.020	Scophthalmus_maximus
ENSTGUG00000010553	SF3B1	100	93.760	ENSSDUG00000017422	sf3b1	100	93.760	Seriola_dumerili
ENSTGUG00000010553	SF3B1	100	93.683	ENSSLDG00000019495	sf3b1	100	93.683	Seriola_lalandi_dorsalis
ENSTGUG00000010553	SF3B1	76	99.824	ENSSARG00000007016	SF3B1	76	99.824	Sorex_araneus
ENSTGUG00000010553	SF3B1	100	99.308	ENSSPUG00000000410	SF3B1	100	99.308	Sphenodon_punctatus
ENSTGUG00000010553	SF3B1	100	93.912	ENSSPAG00000010451	sf3b1	99	93.912	Stegastes_partitus
ENSTGUG00000010553	SF3B1	91	98.907	ENSSSCG00000016075	SF3B1	100	99.655	Sus_scrofa
ENSTGUG00000010553	SF3B1	100	93.531	ENSTRUG00000015534	sf3b1	100	93.531	Takifugu_rubripes
ENSTGUG00000010553	SF3B1	88	99.690	ENSTBEG00000008714	SF3B1	93	99.690	Tupaia_belangeri
ENSTGUG00000010553	SF3B1	92	94.058	ENSTTRG00000003414	SF3B1	92	94.058	Tursiops_truncatus
ENSTGUG00000010553	SF3B1	94	94.030	ENSUAMG00000018506	SF3B1	99	98.988	Ursus_americanus
ENSTGUG00000010553	SF3B1	100	99.310	ENSUMAG00000020945	SF3B1	100	99.310	Ursus_maritimus
ENSTGUG00000010553	SF3B1	96	96.847	ENSVPAG00000005798	SF3B1	96	96.847	Vicugna_pacos
ENSTGUG00000010553	SF3B1	100	99.310	ENSVVUG00000025948	SF3B1	95	99.310	Vulpes_vulpes
ENSTGUG00000010553	SF3B1	100	96.702	ENSXETG00000013339	sf3b1	100	96.702	Xenopus_tropicalis
ENSTGUG00000010553	SF3B1	100	90.276	ENSXCOG00000018086	sf3b1	100	90.160	Xiphophorus_couchianus
ENSTGUG00000010553	SF3B1	100	93.764	ENSXMAG00000007369	sf3b1	100	93.991	Xiphophorus_maculatus