EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000010971 (Gene tree)
Gene ID: 100229212
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Plus strand
Length: 27419 bases
Position: chr6:28140669-28168087
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000011314	TruB_N	PF01509.18	8.7e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000011437	TRUB1-201	837	-	ENSTGUP00000011314	279 (aa)	-	H0ZL41

Gene Model

Click here to download ENSTGUG00000010971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000010971's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000010971	TRUB1	72	31.373	ENSTGUG00000003704	TRUB2	77	31.373

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000010971	TRUB1	97	75.735	ENSG00000165832	TRUB1	77	75.926	Homo_sapiens
ENSTGUG00000010971	TRUB1	87	69.388	ENSAPOG00000020565	trub1	91	68.651	Acanthochromis_polyacanthus
ENSTGUG00000010971	TRUB1	97	75.182	ENSAMEG00000014931	TRUB1	77	75.368	Ailuropoda_melanoleuca
ENSTGUG00000010971	TRUB1	96	59.341	ENSACIG00000003060	trub1	88	60.674	Amphilophus_citrinellus
ENSTGUG00000010971	TRUB1	87	69.388	ENSAOCG00000017188	trub1	89	69.388	Amphiprion_ocellaris
ENSTGUG00000010971	TRUB1	90	67.194	ENSAPEG00000015209	trub1	89	68.980	Amphiprion_percula
ENSTGUG00000010971	TRUB1	88	68.952	ENSATEG00000023291	trub1	88	68.952	Anabas_testudineus
ENSTGUG00000010971	TRUB1	99	88.129	ENSAPLG00000006808	TRUB1	97	89.259	Anas_platyrhynchos
ENSTGUG00000010971	TRUB1	99	74.007	ENSACAG00000009282	TRUB1	96	75.188	Anolis_carolinensis
ENSTGUG00000010971	TRUB1	97	75.735	ENSANAG00000022870	TRUB1	77	75.926	Aotus_nancymaae
ENSTGUG00000010971	TRUB1	98	64.000	ENSACLG00000000823	trub1	94	65.299	Astatotilapia_calliptera
ENSTGUG00000010971	TRUB1	87	69.262	ENSAMXG00000015845	trub1	82	69.262	Astyanax_mexicanus
ENSTGUG00000010971	TRUB1	97	75.368	ENSBTAG00000012955	TRUB1	77	75.556	Bos_taurus
ENSTGUG00000010971	TRUB1	97	75.735	ENSCJAG00000047815	TRUB1	77	75.926	Callithrix_jacchus
ENSTGUG00000010971	TRUB1	97	76.471	ENSCAFG00000011688	TRUB1	77	76.667	Canis_familiaris
ENSTGUG00000010971	TRUB1	97	76.471	ENSCAFG00020013237	TRUB1	77	76.667	Canis_lupus_dingo
ENSTGUG00000010971	TRUB1	97	75.368	ENSCHIG00000020884	TRUB1	81	75.556	Capra_hircus
ENSTGUG00000010971	TRUB1	97	74.818	ENSTSYG00000000446	TRUB1	77	75.000	Carlito_syrichta
ENSTGUG00000010971	TRUB1	81	68.722	ENSCAPG00000017088	TRUB1	89	68.722	Cavia_aperea
ENSTGUG00000010971	TRUB1	68	73.333	ENSCPOG00000030129	-	72	75.135	Cavia_porcellus
ENSTGUG00000010971	TRUB1	65	74.457	ENSCPOG00000040236	-	75	74.725	Cavia_porcellus
ENSTGUG00000010971	TRUB1	97	75.735	ENSCCAG00000028842	TRUB1	77	75.926	Cebus_capucinus
ENSTGUG00000010971	TRUB1	97	75.368	ENSCATG00000033431	TRUB1	77	75.556	Cercocebus_atys
ENSTGUG00000010971	TRUB1	65	73.370	ENSCLAG00000008664	TRUB1	75	73.626	Chinchilla_lanigera
ENSTGUG00000010971	TRUB1	97	75.735	ENSCSAG00000004891	TRUB1	77	75.926	Chlorocebus_sabaeus
ENSTGUG00000010971	TRUB1	97	66.912	ENSCHOG00000011931	TRUB1	77	67.037	Choloepus_hoffmanni
ENSTGUG00000010971	TRUB1	99	80.935	ENSCPBG00000003051	TRUB1	93	82.900	Chrysemys_picta_bellii
ENSTGUG00000010971	TRUB1	97	75.735	ENSCANG00000029445	TRUB1	77	75.926	Colobus_angolensis_palliatus
ENSTGUG00000010971	TRUB1	81	77.093	ENSCGRG00001016772	-	80	74.583	Cricetulus_griseus_chok1gshd
ENSTGUG00000010971	TRUB1	94	67.045	ENSCGRG00001010322	-	73	67.037	Cricetulus_griseus_chok1gshd
ENSTGUG00000010971	TRUB1	94	75.758	ENSCGRG00000010806	Trub1	83	75.185	Cricetulus_griseus_crigri
ENSTGUG00000010971	TRUB1	90	64.032	ENSCSEG00000011261	trub1	79	65.984	Cynoglossus_semilaevis
ENSTGUG00000010971	TRUB1	90	66.798	ENSCVAG00000008791	trub1	75	68.163	Cyprinodon_variegatus
ENSTGUG00000010971	TRUB1	95	67.925	ENSDARG00000053805	trub1	91	67.925	Danio_rerio
ENSTGUG00000010971	TRUB1	97	74.265	ENSDNOG00000001069	TRUB1	77	74.444	Dasypus_novemcinctus
ENSTGUG00000010971	TRUB1	94	75.758	ENSDORG00000010431	Trub1	78	75.926	Dipodomys_ordii
ENSTGUG00000010971	TRUB1	73	71.014	ENSETEG00000009183	TRUB1	57	71.324	Echinops_telfairi
ENSTGUG00000010971	TRUB1	97	75.735	ENSEASG00005014739	TRUB1	77	75.926	Equus_asinus_asinus
ENSTGUG00000010971	TRUB1	97	75.735	ENSECAG00000007177	TRUB1	77	75.926	Equus_caballus
ENSTGUG00000010971	TRUB1	97	66.544	ENSEEUG00000013993	TRUB1	75	66.667	Erinaceus_europaeus
ENSTGUG00000010971	TRUB1	87	70.492	ENSELUG00000000502	trub1	85	70.492	Esox_lucius
ENSTGUG00000010971	TRUB1	100	75.801	ENSFCAG00000031927	TRUB1	77	77.037	Felis_catus
ENSTGUG00000010971	TRUB1	85	95.798	ENSFALG00000002232	TRUB1	92	95.798	Ficedula_albicollis
ENSTGUG00000010971	TRUB1	65	75.000	ENSFDAG00000008140	TRUB1	75	75.275	Fukomys_damarensis
ENSTGUG00000010971	TRUB1	90	66.142	ENSFHEG00000004016	trub1	84	68.163	Fundulus_heteroclitus
ENSTGUG00000010971	TRUB1	100	86.429	ENSGALG00000009091	TRUB1	95	87.778	Gallus_gallus
ENSTGUG00000010971	TRUB1	88	64.257	ENSGAFG00000009193	trub1	85	65.432	Gambusia_affinis
ENSTGUG00000010971	TRUB1	70	69.231	ENSGACG00000015387	trub1	96	69.231	Gasterosteus_aculeatus
ENSTGUG00000010971	TRUB1	97	82.721	ENSGAGG00000009758	TRUB1	77	82.900	Gopherus_agassizii
ENSTGUG00000010971	TRUB1	97	76.103	ENSGGOG00000004583	TRUB1	77	76.296	Gorilla_gorilla
ENSTGUG00000010971	TRUB1	98	64.000	ENSHBUG00000016787	trub1	94	65.299	Haplochromis_burtoni
ENSTGUG00000010971	TRUB1	97	72.059	ENSHGLG00000015314	TRUB1	77	72.222	Heterocephalus_glaber_female
ENSTGUG00000010971	TRUB1	65	73.913	ENSHGLG00100009183	TRUB1	77	74.176	Heterocephalus_glaber_male
ENSTGUG00000010971	TRUB1	90	67.194	ENSHCOG00000017877	trub1	88	69.262	Hippocampus_comes
ENSTGUG00000010971	TRUB1	87	68.980	ENSIPUG00000017559	trub1	86	68.980	Ictalurus_punctatus
ENSTGUG00000010971	TRUB1	97	74.632	ENSSTOG00000003641	TRUB1	81	74.815	Ictidomys_tridecemlineatus
ENSTGUG00000010971	TRUB1	96	74.539	ENSJJAG00000011800	Trub1	79	74.721	Jaculus_jaculus
ENSTGUG00000010971	TRUB1	90	66.142	ENSKMAG00000006232	trub1	88	68.163	Kryptolebias_marmoratus
ENSTGUG00000010971	TRUB1	97	62.319	ENSLBEG00000026722	trub1	91	64.751	Labrus_bergylta
ENSTGUG00000010971	TRUB1	96	75.373	ENSLACG00000014885	TRUB1	87	77.220	Latimeria_chalumnae
ENSTGUG00000010971	TRUB1	96	70.632	ENSLOCG00000012979	trub1	88	72.587	Lepisosteus_oculatus
ENSTGUG00000010971	TRUB1	89	77.600	ENSLAFG00000015452	TRUB1	75	75.758	Loxodonta_africana
ENSTGUG00000010971	TRUB1	97	75.735	ENSMFAG00000031767	TRUB1	77	75.926	Macaca_fascicularis
ENSTGUG00000010971	TRUB1	97	75.735	ENSMMUG00000001902	TRUB1	77	75.926	Macaca_mulatta
ENSTGUG00000010971	TRUB1	97	70.956	ENSMNEG00000044646	TRUB1	76	71.111	Macaca_nemestrina
ENSTGUG00000010971	TRUB1	97	75.735	ENSMLEG00000042655	TRUB1	77	75.926	Mandrillus_leucophaeus
ENSTGUG00000010971	TRUB1	98	64.000	ENSMZEG00005024095	trub1	94	65.299	Maylandia_zebra
ENSTGUG00000010971	TRUB1	98	87.591	ENSMGAG00000011135	TRUB1	93	87.778	Meleagris_gallopavo
ENSTGUG00000010971	TRUB1	94	73.485	ENSMAUG00000011101	Trub1	80	73.704	Mesocricetus_auratus
ENSTGUG00000010971	TRUB1	97	76.103	ENSMICG00000016324	TRUB1	77	76.296	Microcebus_murinus
ENSTGUG00000010971	TRUB1	94	73.864	ENSMOCG00000017759	Trub1	82	74.074	Microtus_ochrogaster
ENSTGUG00000010971	TRUB1	96	79.259	ENSMODG00000009676	TRUB1	75	79.259	Monodelphis_domestica
ENSTGUG00000010971	TRUB1	95	72.285	MGP_CAROLIEiJ_G0023100	Trub1	80	72.491	Mus_caroli
ENSTGUG00000010971	TRUB1	95	71.536	ENSMUSG00000025086	Trub1	80	71.747	Mus_musculus
ENSTGUG00000010971	TRUB1	96	71.956	MGP_PahariEiJ_G0014588	Trub1	80	72.862	Mus_pahari
ENSTGUG00000010971	TRUB1	95	71.536	MGP_SPRETEiJ_G0024021	Trub1	80	71.747	Mus_spretus
ENSTGUG00000010971	TRUB1	97	76.471	ENSMPUG00000003556	TRUB1	77	76.667	Mustela_putorius_furo
ENSTGUG00000010971	TRUB1	99	74.733	ENSMLUG00000017686	TRUB1	79	76.296	Myotis_lucifugus
ENSTGUG00000010971	TRUB1	97	76.471	ENSNGAG00000018682	Trub1	78	76.667	Nannospalax_galili
ENSTGUG00000010971	TRUB1	87	69.388	ENSNBRG00000023393	trub1	88	69.388	Neolamprologus_brichardi
ENSTGUG00000010971	TRUB1	97	76.103	ENSNLEG00000016345	TRUB1	77	76.296	Nomascus_leucogenys
ENSTGUG00000010971	TRUB1	71	80.597	ENSMEUG00000006603	TRUB1	74	80.597	Notamacropus_eugenii
ENSTGUG00000010971	TRUB1	99	71.429	ENSOPRG00000009371	TRUB1	78	72.963	Ochotona_princeps
ENSTGUG00000010971	TRUB1	97	71.691	ENSODEG00000010854	TRUB1	77	71.852	Octodon_degus
ENSTGUG00000010971	TRUB1	90	67.460	ENSONIG00000007249	trub1	89	68.980	Oreochromis_niloticus
ENSTGUG00000010971	TRUB1	97	77.656	ENSOANG00000001556	TRUB1	89	77.778	Ornithorhynchus_anatinus
ENSTGUG00000010971	TRUB1	100	73.665	ENSOCUG00000009456	TRUB1	78	74.815	Oryctolagus_cuniculus
ENSTGUG00000010971	TRUB1	86	68.880	ENSORLG00000029719	trub1	86	68.880	Oryzias_latipes
ENSTGUG00000010971	TRUB1	86	68.465	ENSORLG00020016767	trub1	85	68.465	Oryzias_latipes_hni
ENSTGUG00000010971	TRUB1	86	68.465	ENSORLG00015014728	trub1	86	68.465	Oryzias_latipes_hsok
ENSTGUG00000010971	TRUB1	86	69.008	ENSOMEG00000014556	trub1	85	69.008	Oryzias_melastigma
ENSTGUG00000010971	TRUB1	97	76.471	ENSOGAG00000015895	TRUB1	77	76.667	Otolemur_garnettii
ENSTGUG00000010971	TRUB1	97	72.401	ENSOARG00000015591	TRUB1	79	73.285	Ovis_aries
ENSTGUG00000010971	TRUB1	97	76.103	ENSPPAG00000043645	TRUB1	77	76.296	Pan_paniscus
ENSTGUG00000010971	TRUB1	100	75.089	ENSPPRG00000007096	TRUB1	77	76.296	Panthera_pardus
ENSTGUG00000010971	TRUB1	100	75.445	ENSPTIG00000006378	TRUB1	77	76.667	Panthera_tigris_altaica
ENSTGUG00000010971	TRUB1	97	76.103	ENSPTRG00000002964	TRUB1	77	76.296	Pan_troglodytes
ENSTGUG00000010971	TRUB1	97	75.735	ENSPANG00000020712	TRUB1	77	75.926	Papio_anubis
ENSTGUG00000010971	TRUB1	60	71.257	ENSPKIG00000003852	trub1	74	69.364	Paramormyrops_kingsleyae
ENSTGUG00000010971	TRUB1	97	81.618	ENSPSIG00000012877	TRUB1	93	81.784	Pelodiscus_sinensis
ENSTGUG00000010971	TRUB1	87	66.803	ENSPMGG00000000075	trub1	88	66.803	Periophthalmus_magnuspinnatus
ENSTGUG00000010971	TRUB1	97	74.632	ENSPEMG00000011156	Trub1	79	74.815	Peromyscus_maniculatus_bairdii
ENSTGUG00000010971	TRUB1	92	80.000	ENSPCIG00000009729	TRUB1	71	80.000	Phascolarctos_cinereus
ENSTGUG00000010971	TRUB1	91	65.098	ENSPFOG00000009950	trub1	89	67.213	Poecilia_formosa
ENSTGUG00000010971	TRUB1	91	65.098	ENSPLAG00000013855	trub1	86	67.213	Poecilia_latipinna
ENSTGUG00000010971	TRUB1	91	65.098	ENSPMEG00000009064	trub1	88	67.213	Poecilia_mexicana
ENSTGUG00000010971	TRUB1	91	66.667	ENSPREG00000003343	trub1	88	68.443	Poecilia_reticulata
ENSTGUG00000010971	TRUB1	97	75.735	ENSPPYG00000002676	TRUB1	77	75.926	Pongo_abelii
ENSTGUG00000010971	TRUB1	97	67.647	ENSPCAG00000008427	TRUB1	76	67.778	Procavia_capensis
ENSTGUG00000010971	TRUB1	97	70.956	ENSPCOG00000024360	TRUB1	76	71.111	Propithecus_coquereli
ENSTGUG00000010971	TRUB1	72	77.833	ENSPVAG00000007575	TRUB1	76	78.109	Pteropus_vampyrus
ENSTGUG00000010971	TRUB1	98	64.000	ENSPNYG00000018614	trub1	94	65.299	Pundamilia_nyererei
ENSTGUG00000010971	TRUB1	87	63.223	ENSPNAG00000006881	trub1	78	63.223	Pygocentrus_nattereri
ENSTGUG00000010971	TRUB1	96	71.956	ENSRNOG00000017321	Trub1	79	72.119	Rattus_norvegicus
ENSTGUG00000010971	TRUB1	97	67.279	ENSRBIG00000033423	TRUB1	75	67.407	Rhinopithecus_bieti
ENSTGUG00000010971	TRUB1	97	75.735	ENSRROG00000033902	TRUB1	77	75.926	Rhinopithecus_roxellana
ENSTGUG00000010971	TRUB1	97	75.735	ENSSBOG00000024237	TRUB1	77	75.926	Saimiri_boliviensis_boliviensis
ENSTGUG00000010971	TRUB1	90	74.902	ENSSHAG00000009346	TRUB1	84	74.902	Sarcophilus_harrisii
ENSTGUG00000010971	TRUB1	86	71.901	ENSSFOG00015022124	trub1	83	71.901	Scleropages_formosus
ENSTGUG00000010971	TRUB1	90	66.929	ENSSMAG00000001020	trub1	87	68.571	Scophthalmus_maximus
ENSTGUG00000010971	TRUB1	85	69.167	ENSSDUG00000016414	trub1	88	69.388	Seriola_dumerili
ENSTGUG00000010971	TRUB1	85	69.583	ENSSLDG00000015486	trub1	88	69.796	Seriola_lalandi_dorsalis
ENSTGUG00000010971	TRUB1	99	81.227	ENSSPUG00000001642	TRUB1	93	81.784	Sphenodon_punctatus
ENSTGUG00000010971	TRUB1	92	67.308	ENSSPAG00000001217	trub1	94	67.308	Stegastes_partitus
ENSTGUG00000010971	TRUB1	97	74.632	ENSSSCG00000010653	TRUB1	77	75.758	Sus_scrofa
ENSTGUG00000010971	TRUB1	81	65.198	ENSTBEG00000002880	TRUB1	89	65.198	Tupaia_belangeri
ENSTGUG00000010971	TRUB1	72	76.847	ENSTTRG00000005767	TRUB1	77	77.114	Tursiops_truncatus
ENSTGUG00000010971	TRUB1	97	76.471	ENSUAMG00000024876	TRUB1	77	76.667	Ursus_americanus
ENSTGUG00000010971	TRUB1	97	76.103	ENSUMAG00000002411	TRUB1	80	76.296	Ursus_maritimus
ENSTGUG00000010971	TRUB1	97	77.574	ENSVPAG00000005507	TRUB1	77	77.778	Vicugna_pacos
ENSTGUG00000010971	TRUB1	97	76.471	ENSVVUG00000010085	TRUB1	65	76.667	Vulpes_vulpes
ENSTGUG00000010971	TRUB1	96	69.030	ENSXETG00000023828	trub1	96	69.582	Xenopus_tropicalis
ENSTGUG00000010971	TRUB1	88	65.182	ENSXCOG00000017847	trub1	86	66.116	Xiphophorus_couchianus
ENSTGUG00000010971	TRUB1	91	64.314	ENSXMAG00000014701	trub1	88	66.393	Xiphophorus_maculatus