EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000011295 (Gene tree)
Gene ID: 100221455
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 34863 bases
Position: chr1:45959037-45993899
Accession: 100221455
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000011650	RRM_1	PF00076.22	6.3e-33	1	2
ENSTGUP00000011650	RRM_1	PF00076.22	6.3e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000011777	PSPC1-201	1944	XM_002190786	ENSTGUP00000011650	467 (aa)	XP_002190822	H0ZM27

Gene Model

Click here to download ENSTGUG00000011295's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000011295's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000011295	PSPC1	99	60.254	ENSTGUG00000007048	NONO	92	61.670
ENSTGUG00000011295	PSPC1	99	59.871	ENSTGUG00000001722	SFPQ	93	63.723

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000011295	PSPC1	100	94.647	ENSG00000121390	PSPC1	89	94.647	Homo_sapiens
ENSTGUG00000011295	PSPC1	99	69.647	ENSAPOG00000015946	pspc1	88	69.118	Acanthochromis_polyacanthus
ENSTGUG00000011295	PSPC1	100	94.647	ENSAMEG00000017420	PSPC1	89	94.647	Ailuropoda_melanoleuca
ENSTGUG00000011295	PSPC1	99	61.017	ENSACIG00000018695	pspc1	87	58.898	Amphilophus_citrinellus
ENSTGUG00000011295	PSPC1	99	68.750	ENSAOCG00000005279	pspc1	88	68.134	Amphiprion_ocellaris
ENSTGUG00000011295	PSPC1	99	69.427	ENSAPEG00000015927	pspc1	88	68.842	Amphiprion_percula
ENSTGUG00000011295	PSPC1	99	56.992	ENSATEG00000004878	pspc1	87	57.415	Anabas_testudineus
ENSTGUG00000011295	PSPC1	87	99.010	ENSAPLG00000006246	PSPC1	100	99.010	Anas_platyrhynchos
ENSTGUG00000011295	PSPC1	99	60.515	ENSAPLG00000003643	SFPQ	83	59.657	Anas_platyrhynchos
ENSTGUG00000011295	PSPC1	99	94.850	ENSACAG00000002093	PSPC1	88	95.064	Anolis_carolinensis
ENSTGUG00000011295	PSPC1	99	55.579	ENSACAG00000013307	-	67	56.438	Anolis_carolinensis
ENSTGUG00000011295	PSPC1	100	94.433	ENSANAG00000000059	PSPC1	89	94.433	Aotus_nancymaae
ENSTGUG00000011295	PSPC1	99	59.698	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSTGUG00000011295	PSPC1	99	72.765	ENSAMXG00000036881	pspc1	88	71.310	Astyanax_mexicanus
ENSTGUG00000011295	PSPC1	99	94.624	ENSBTAG00000003934	PSPC1	89	94.624	Bos_taurus
ENSTGUG00000011295	PSPC1	100	94.647	ENSCJAG00000004554	PSPC1	89	94.647	Callithrix_jacchus
ENSTGUG00000011295	PSPC1	100	94.647	ENSCAFG00020002009	PSPC1	89	94.647	Canis_lupus_dingo
ENSTGUG00000011295	PSPC1	99	94.624	ENSCHIG00000016708	PSPC1	89	94.624	Capra_hircus
ENSTGUG00000011295	PSPC1	86	87.345	ENSTSYG00000032882	PSPC1	93	81.991	Carlito_syrichta
ENSTGUG00000011295	PSPC1	100	94.004	ENSCPOG00000000395	PSPC1	90	94.004	Cavia_porcellus
ENSTGUG00000011295	PSPC1	100	94.433	ENSCCAG00000033498	PSPC1	89	94.433	Cebus_capucinus
ENSTGUG00000011295	PSPC1	100	94.647	ENSCATG00000036434	PSPC1	91	96.364	Cercocebus_atys
ENSTGUG00000011295	PSPC1	99	84.267	ENSCLAG00000005241	PSPC1	99	84.267	Chinchilla_lanigera
ENSTGUG00000011295	PSPC1	100	88.223	ENSCHOG00000008913	PSPC1	89	89.507	Choloepus_hoffmanni
ENSTGUG00000011295	PSPC1	100	99.143	ENSCPBG00000020859	PSPC1	89	99.143	Chrysemys_picta_bellii
ENSTGUG00000011295	PSPC1	66	60.129	ENSCSAVG00000003533	-	59	58.599	Ciona_savignyi
ENSTGUG00000011295	PSPC1	87	80.788	ENSCANG00000018948	PSPC1	87	96.958	Colobus_angolensis_palliatus
ENSTGUG00000011295	PSPC1	100	94.004	ENSCGRG00001018368	Pspc1	89	94.004	Cricetulus_griseus_chok1gshd
ENSTGUG00000011295	PSPC1	100	94.004	ENSCGRG00000011724	Pspc1	89	94.004	Cricetulus_griseus_crigri
ENSTGUG00000011295	PSPC1	98	65.577	ENSCVAG00000007679	-	86	64.440	Cyprinodon_variegatus
ENSTGUG00000011295	PSPC1	99	71.247	ENSDARG00000006621	pspc1	100	69.398	Danio_rerio
ENSTGUG00000011295	PSPC1	100	94.433	ENSDNOG00000011078	PSPC1	89	94.433	Dasypus_novemcinctus
ENSTGUG00000011295	PSPC1	100	91.649	ENSDORG00000016050	Pspc1	89	91.649	Dipodomys_ordii
ENSTGUG00000011295	PSPC1	61	98.020	ENSETEG00000000502	-	72	98.020	Echinops_telfairi
ENSTGUG00000011295	PSPC1	60	48.366	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSTGUG00000011295	PSPC1	99	57.645	ENSEBUG00000003964	-	62	70.809	Eptatretus_burgeri
ENSTGUG00000011295	PSPC1	100	94.861	ENSEASG00005000119	PSPC1	90	94.861	Equus_asinus_asinus
ENSTGUG00000011295	PSPC1	100	94.861	ENSECAG00000017286	PSPC1	90	94.861	Equus_caballus
ENSTGUG00000011295	PSPC1	69	86.260	ENSEEUG00000011288	-	63	86.312	Erinaceus_europaeus
ENSTGUG00000011295	PSPC1	99	72.574	ENSELUG00000003746	pspc1	87	72.117	Esox_lucius
ENSTGUG00000011295	PSPC1	100	94.861	ENSFCAG00000027841	PSPC1	89	94.861	Felis_catus
ENSTGUG00000011295	PSPC1	100	100.000	ENSFALG00000008750	PSPC1	88	100.000	Ficedula_albicollis
ENSTGUG00000011295	PSPC1	100	94.004	ENSFDAG00000002617	PSPC1	91	94.004	Fukomys_damarensis
ENSTGUG00000011295	PSPC1	99	66.452	ENSGMOG00000015074	pspc1	86	65.517	Gadus_morhua
ENSTGUG00000011295	PSPC1	100	99.572	ENSGALG00000017142	PSPC1	89	99.572	Gallus_gallus
ENSTGUG00000011295	PSPC1	69	77.231	ENSGAFG00000006327	pspc1	67	77.231	Gambusia_affinis
ENSTGUG00000011295	PSPC1	99	64.946	ENSGACG00000014901	pspc1	92	72.561	Gasterosteus_aculeatus
ENSTGUG00000011295	PSPC1	99	59.442	ENSGAGG00000017325	-	67	58.422	Gopherus_agassizii
ENSTGUG00000011295	PSPC1	100	99.143	ENSGAGG00000019164	PSPC1	89	99.143	Gopherus_agassizii
ENSTGUG00000011295	PSPC1	100	94.433	ENSGGOG00000003414	PSPC1	89	94.433	Gorilla_gorilla
ENSTGUG00000011295	PSPC1	99	68.951	ENSHBUG00000001139	pspc1	87	68.522	Haplochromis_burtoni
ENSTGUG00000011295	PSPC1	100	94.004	ENSHGLG00000018811	PSPC1	90	94.004	Heterocephalus_glaber_female
ENSTGUG00000011295	PSPC1	63	97.952	ENSHGLG00100007962	PSPC1	90	97.952	Heterocephalus_glaber_male
ENSTGUG00000011295	PSPC1	81	70.466	ENSHCOG00000013251	pspc1	85	68.653	Hippocampus_comes
ENSTGUG00000011295	PSPC1	99	72.881	ENSIPUG00000013192	pspc1	88	72.176	Ictalurus_punctatus
ENSTGUG00000011295	PSPC1	100	94.861	ENSSTOG00000026833	PSPC1	89	94.861	Ictidomys_tridecemlineatus
ENSTGUG00000011295	PSPC1	100	94.218	ENSJJAG00000018334	Pspc1	89	94.218	Jaculus_jaculus
ENSTGUG00000011295	PSPC1	99	53.319	ENSKMAG00000013525	-	84	54.936	Kryptolebias_marmoratus
ENSTGUG00000011295	PSPC1	99	65.631	ENSLBEG00000004474	pspc1	75	71.154	Labrus_bergylta
ENSTGUG00000011295	PSPC1	98	87.336	ENSLACG00000010762	PSPC1	88	86.853	Latimeria_chalumnae
ENSTGUG00000011295	PSPC1	99	84.416	ENSLOCG00000010832	pspc1	91	84.416	Lepisosteus_oculatus
ENSTGUG00000011295	PSPC1	100	94.861	ENSLAFG00000010968	PSPC1	89	94.861	Loxodonta_africana
ENSTGUG00000011295	PSPC1	100	94.647	ENSMFAG00000032728	PSPC1	92	96.375	Macaca_fascicularis
ENSTGUG00000011295	PSPC1	100	94.647	ENSMMUG00000020262	PSPC1	89	96.364	Macaca_mulatta
ENSTGUG00000011295	PSPC1	100	94.647	ENSMNEG00000027401	PSPC1	89	94.647	Macaca_nemestrina
ENSTGUG00000011295	PSPC1	86	94.750	ENSMLEG00000039043	PSPC1	94	94.750	Mandrillus_leucophaeus
ENSTGUG00000011295	PSPC1	100	66.395	ENSMAMG00000004333	pspc1	80	70.091	Mastacembelus_armatus
ENSTGUG00000011295	PSPC1	99	59.698	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSTGUG00000011295	PSPC1	87	98.522	ENSMGAG00000015134	PSPC1	100	98.522	Meleagris_gallopavo
ENSTGUG00000011295	PSPC1	87	89.163	ENSMAUG00000021067	Pspc1	87	89.163	Mesocricetus_auratus
ENSTGUG00000011295	PSPC1	100	94.433	ENSMICG00000013970	PSPC1	89	94.433	Microcebus_murinus
ENSTGUG00000011295	PSPC1	100	94.433	ENSMOCG00000006060	Pspc1	89	94.433	Microtus_ochrogaster
ENSTGUG00000011295	PSPC1	99	45.214	ENSMMOG00000004352	pspc1	58	54.294	Mola_mola
ENSTGUG00000011295	PSPC1	92	93.939	ENSMODG00000008029	PSPC1	69	93.939	Monodelphis_domestica
ENSTGUG00000011295	PSPC1	99	68.085	ENSMALG00000008914	pspc1	88	66.878	Monopterus_albus
ENSTGUG00000011295	PSPC1	100	94.218	MGP_CAROLIEiJ_G0019341	Pspc1	89	94.218	Mus_caroli
ENSTGUG00000011295	PSPC1	100	94.433	ENSMUSG00000021938	Pspc1	89	94.433	Mus_musculus
ENSTGUG00000011295	PSPC1	100	94.218	MGP_PahariEiJ_G0030359	Pspc1	89	94.218	Mus_pahari
ENSTGUG00000011295	PSPC1	100	94.433	MGP_SPRETEiJ_G0020232	Pspc1	89	94.433	Mus_spretus
ENSTGUG00000011295	PSPC1	100	94.647	ENSMPUG00000013347	PSPC1	89	94.647	Mustela_putorius_furo
ENSTGUG00000011295	PSPC1	100	94.043	ENSMLUG00000017663	PSPC1	90	94.043	Myotis_lucifugus
ENSTGUG00000011295	PSPC1	100	94.218	ENSNGAG00000011271	Pspc1	89	94.218	Nannospalax_galili
ENSTGUG00000011295	PSPC1	69	69.136	ENSNBRG00000014059	pspc1	76	70.062	Neolamprologus_brichardi
ENSTGUG00000011295	PSPC1	100	94.647	ENSNLEG00000001294	PSPC1	89	94.647	Nomascus_leucogenys
ENSTGUG00000011295	PSPC1	100	71.306	ENSMEUG00000000476	PSPC1	89	71.306	Notamacropus_eugenii
ENSTGUG00000011295	PSPC1	100	82.013	ENSODEG00000007817	-	89	82.013	Octodon_degus
ENSTGUG00000011295	PSPC1	100	82.809	ENSODEG00000019012	-	89	84.277	Octodon_degus
ENSTGUG00000011295	PSPC1	99	69.658	ENSONIG00000012010	pspc1	87	67.437	Oreochromis_niloticus
ENSTGUG00000011295	PSPC1	99	68.240	ENSOANG00000011381	-	92	67.167	Ornithorhynchus_anatinus
ENSTGUG00000011295	PSPC1	86	94.000	ENSOANG00000009017	-	100	94.000	Ornithorhynchus_anatinus
ENSTGUG00000011295	PSPC1	100	94.647	ENSOCUG00000006153	PSPC1	89	94.647	Oryctolagus_cuniculus
ENSTGUG00000011295	PSPC1	99	69.379	ENSORLG00000004232	-	87	65.966	Oryzias_latipes
ENSTGUG00000011295	PSPC1	99	69.593	ENSORLG00020000578	PSPC1	87	66.176	Oryzias_latipes_hni
ENSTGUG00000011295	PSPC1	99	69.593	ENSORLG00015017480	pspc1	87	65.966	Oryzias_latipes_hsok
ENSTGUG00000011295	PSPC1	100	94.861	ENSOGAG00000012643	PSPC1	89	94.861	Otolemur_garnettii
ENSTGUG00000011295	PSPC1	98	94.348	ENSOARG00000014163	PSPC1	95	91.957	Ovis_aries
ENSTGUG00000011295	PSPC1	100	88.009	ENSPPAG00000009836	PSPC1	93	96.960	Pan_paniscus
ENSTGUG00000011295	PSPC1	100	94.861	ENSPPRG00000008833	PSPC1	89	94.861	Panthera_pardus
ENSTGUG00000011295	PSPC1	86	94.750	ENSPTIG00000016917	PSPC1	84	94.750	Panthera_tigris_altaica
ENSTGUG00000011295	PSPC1	92	95.116	ENSPTRG00000005677	PSPC1	87	95.116	Pan_troglodytes
ENSTGUG00000011295	PSPC1	100	94.647	ENSPANG00000001992	PSPC1	91	96.375	Papio_anubis
ENSTGUG00000011295	PSPC1	91	77.934	ENSPKIG00000003578	pspc1	89	74.105	Paramormyrops_kingsleyae
ENSTGUG00000011295	PSPC1	100	98.073	ENSPSIG00000005168	PSPC1	89	98.073	Pelodiscus_sinensis
ENSTGUG00000011295	PSPC1	62	73.356	ENSPMGG00000015135	pspc1	79	73.519	Periophthalmus_magnuspinnatus
ENSTGUG00000011295	PSPC1	100	94.218	ENSPEMG00000015214	Pspc1	89	94.218	Peromyscus_maniculatus_bairdii
ENSTGUG00000011295	PSPC1	54	48.077	ENSPMAG00000004618	pspc1	79	48.077	Petromyzon_marinus
ENSTGUG00000011295	PSPC1	100	93.790	ENSPCIG00000017680	PSPC1	89	93.790	Phascolarctos_cinereus
ENSTGUG00000011295	PSPC1	99	67.941	ENSPFOG00000003362	pspc1	88	67.021	Poecilia_formosa
ENSTGUG00000011295	PSPC1	99	67.941	ENSPLAG00000011540	pspc1	87	67.021	Poecilia_latipinna
ENSTGUG00000011295	PSPC1	75	68.091	ENSPLAG00000004407	-	50	68.091	Poecilia_latipinna
ENSTGUG00000011295	PSPC1	75	68.091	ENSPMEG00000001025	-	50	68.091	Poecilia_mexicana
ENSTGUG00000011295	PSPC1	99	67.516	ENSPMEG00000008322	pspc1	87	66.596	Poecilia_mexicana
ENSTGUG00000011295	PSPC1	99	67.516	ENSPREG00000007786	pspc1	87	66.596	Poecilia_reticulata
ENSTGUG00000011295	PSPC1	99	94.421	ENSPPYG00000005186	PSPC1	89	94.218	Pongo_abelii
ENSTGUG00000011295	PSPC1	63	96.341	ENSPCAG00000008314	-	56	96.341	Procavia_capensis
ENSTGUG00000011295	PSPC1	100	89.722	ENSPCOG00000014364	PSPC1	89	89.722	Propithecus_coquereli
ENSTGUG00000011295	PSPC1	100	92.719	ENSPVAG00000005036	PSPC1	90	92.719	Pteropus_vampyrus
ENSTGUG00000011295	PSPC1	99	59.698	ENSPNYG00000008893	pspc1	87	58.887	Pundamilia_nyererei
ENSTGUG00000011295	PSPC1	99	72.458	ENSPNAG00000016511	pspc1	89	72.881	Pygocentrus_nattereri
ENSTGUG00000011295	PSPC1	100	94.004	ENSRNOG00000020782	Pspc1	89	94.004	Rattus_norvegicus
ENSTGUG00000011295	PSPC1	100	94.647	ENSRBIG00000036057	PSPC1	96	94.647	Rhinopithecus_bieti
ENSTGUG00000011295	PSPC1	100	94.647	ENSRROG00000036334	PSPC1	89	94.647	Rhinopithecus_roxellana
ENSTGUG00000011295	PSPC1	89	84.058	ENSSBOG00000028172	PSPC1	90	92.419	Saimiri_boliviensis_boliviensis
ENSTGUG00000011295	PSPC1	100	88.060	ENSSHAG00000004696	PSPC1	89	88.060	Sarcophilus_harrisii
ENSTGUG00000011295	PSPC1	91	77.934	ENSSFOG00015001395	pspc1	99	73.795	Scleropages_formosus
ENSTGUG00000011295	PSPC1	99	66.385	ENSSMAG00000001761	pspc1	82	75.758	Scophthalmus_maximus
ENSTGUG00000011295	PSPC1	99	67.814	ENSSDUG00000010651	pspc1	75	74.408	Seriola_dumerili
ENSTGUG00000011295	PSPC1	99	63.283	ENSSLDG00000004284	pspc1	86	60.341	Seriola_lalandi_dorsalis
ENSTGUG00000011295	PSPC1	100	87.580	ENSSARG00000000888	PSPC1	90	87.580	Sorex_araneus
ENSTGUG00000011295	PSPC1	100	83.761	ENSSPUG00000008550	PSPC1	89	84.188	Sphenodon_punctatus
ENSTGUG00000011295	PSPC1	99	54.352	ENSSPUG00000001136	-	53	61.798	Sphenodon_punctatus
ENSTGUG00000011295	PSPC1	99	67.689	ENSSPAG00000001921	pspc1	75	73.608	Stegastes_partitus
ENSTGUG00000011295	PSPC1	99	94.635	ENSSSCG00000009569	PSPC1	89	94.635	Sus_scrofa
ENSTGUG00000011295	PSPC1	99	63.291	ENSTRUG00000011335	pspc1	88	62.900	Takifugu_rubripes
ENSTGUG00000011295	PSPC1	99	64.882	ENSTNIG00000010358	pspc1	88	62.661	Tetraodon_nigroviridis
ENSTGUG00000011295	PSPC1	100	74.304	ENSTBEG00000002361	PSPC1	89	72.304	Tupaia_belangeri
ENSTGUG00000011295	PSPC1	99	94.635	ENSTTRG00000003343	PSPC1	90	94.635	Tursiops_truncatus
ENSTGUG00000011295	PSPC1	63	97.619	ENSUAMG00000012309	PSPC1	84	97.619	Ursus_americanus
ENSTGUG00000011295	PSPC1	100	94.433	ENSUMAG00000013993	PSPC1	96	94.433	Ursus_maritimus
ENSTGUG00000011295	PSPC1	86	94.750	ENSVPAG00000010029	PSPC1	100	94.750	Vicugna_pacos
ENSTGUG00000011295	PSPC1	100	94.647	ENSVVUG00000006414	PSPC1	89	94.647	Vulpes_vulpes
ENSTGUG00000011295	PSPC1	70	76.074	ENSXCOG00000017438	pspc1	77	76.074	Xiphophorus_couchianus
ENSTGUG00000011295	PSPC1	70	76.380	ENSXMAG00000007929	pspc1	77	76.380	Xiphophorus_maculatus