EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTGUG00000013016 (Gene tree)
Gene ID
100221106
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Taeniopygia_guttata
Status
putative
Strand
Plus strand
Length
19158 bases
Position
chr3:98786637-98805794
Accession
100221106
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTGUP00000013410CPSF73-100_CPF11718.87.4e-5411
ENSTGUP00000013410Beta-CaspPF10996.83e-3411
ENSTGUP00000013410Lactamase_BPF00753.277e-1911
ENSTGUP00000013410RMMBLPF07521.121e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTGUT00000013563CPSF3-2012384XM_002196219ENSTGUP00000013410684 (aa)XP_002196255H0ZS16
Gene Model
Click here to download ENSTGUG00000013016's gene model file
Pathways
Pathway IDPathway NameSource
tgu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000013016's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTGUG00000013016CPSF37038.076ENSTGUG00000003192-8238.076
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTGUG00000013016CPSF39995.595ENSG00000119203CPSF3100100.000Homo_sapiens
ENSTGUG00000013016CPSF39985.316ENSAPOG00000022087cpsf39985.316Acanthochromis_polyacanthus
ENSTGUG00000013016CPSF37396.982ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSTGUG00000013016CPSF39995.595ENSAMEG00000008493CPSF39995.595Ailuropoda_melanoleuca
ENSTGUG00000013016CPSF39281.905ENSACIG00000009846cpsf39981.905Amphilophus_citrinellus
ENSTGUG00000013016CPSF39286.190ENSACIG00000023663CPSF39986.190Amphilophus_citrinellus
ENSTGUG00000013016CPSF39985.169ENSAOCG00000022056cpsf39985.169Amphiprion_ocellaris
ENSTGUG00000013016CPSF39987.555ENSAOCG00000010077CPSF39987.555Amphiprion_ocellaris
ENSTGUG00000013016CPSF39985.316ENSAPEG00000019526cpsf39985.316Amphiprion_percula
ENSTGUG00000013016CPSF39987.555ENSAPEG00000021167CPSF39987.555Amphiprion_percula
ENSTGUG00000013016CPSF39982.577ENSATEG00000014525CPSF39982.577Anabas_testudineus
ENSTGUG00000013016CPSF39985.567ENSATEG00000003959cpsf39885.567Anabas_testudineus
ENSTGUG00000013016CPSF39897.917ENSAPLG00000006941CPSF39897.917Anas_platyrhynchos
ENSTGUG00000013016CPSF39393.858ENSACAG00000001759CPSF39993.858Anolis_carolinensis
ENSTGUG00000013016CPSF39988.840ENSANAG00000031254CPSF39989.222Aotus_nancymaae
ENSTGUG00000013016CPSF39885.457ENSACLG00000014484cpsf39985.457Astatotilapia_calliptera
ENSTGUG00000013016CPSF39286.190ENSACLG00000018846CPSF39986.190Astatotilapia_calliptera
ENSTGUG00000013016CPSF39988.088ENSAMXG00000004786cpsf39888.088Astyanax_mexicanus
ENSTGUG00000013016CPSF39995.448ENSBTAG00000019735CPSF39995.448Bos_taurus
ENSTGUG00000013016CPSF38661.730WBGene00013460cpsf-38561.730Caenorhabditis_elegans
ENSTGUG00000013016CPSF39995.448ENSCJAG00000006276CPSF39995.448Callithrix_jacchus
ENSTGUG00000013016CPSF39995.595ENSCAFG00000003375CPSF39595.595Canis_familiaris
ENSTGUG00000013016CPSF39097.240ENSCAFG00020026799CPSF39997.240Canis_lupus_dingo
ENSTGUG00000013016CPSF39995.448ENSCHIG00000013973CPSF39995.448Capra_hircus
ENSTGUG00000013016CPSF39995.448ENSTSYG00000002967CPSF39995.448Carlito_syrichta
ENSTGUG00000013016CPSF39894.003ENSCAPG00000013851CPSF310094.003Cavia_aperea
ENSTGUG00000013016CPSF39994.126ENSCPOG00000011299CPSF39994.126Cavia_porcellus
ENSTGUG00000013016CPSF39995.301ENSCCAG00000036730CPSF39995.301Cebus_capucinus
ENSTGUG00000013016CPSF39992.962ENSCATG00000014770CPSF39998.616Cercocebus_atys
ENSTGUG00000013016CPSF39994.126ENSCLAG00000002727CPSF39994.126Chinchilla_lanigera
ENSTGUG00000013016CPSF39987.518ENSCSAG00000007125CPSF39987.518Chlorocebus_sabaeus
ENSTGUG00000013016CPSF386100.000ENSCHOG00000000180CPSF38568.772Choloepus_hoffmanni
ENSTGUG00000013016CPSF39997.365ENSCPBG00000014074CPSF39997.365Chrysemys_picta_bellii
ENSTGUG00000013016CPSF39968.129ENSCING00000007214-9868.129Ciona_intestinalis
ENSTGUG00000013016CPSF39983.700ENSCANG00000034435CPSF39983.700Colobus_angolensis_palliatus
ENSTGUG00000013016CPSF39995.154ENSCGRG00001013134Cpsf39995.154Cricetulus_griseus_chok1gshd
ENSTGUG00000013016CPSF39995.154ENSCGRG00000018319Cpsf39995.154Cricetulus_griseus_crigri
ENSTGUG00000013016CPSF39986.257ENSCSEG00000002021CPSF39986.257Cynoglossus_semilaevis
ENSTGUG00000013016CPSF39987.812ENSCVAG00000015067CPSF39987.812Cyprinodon_variegatus
ENSTGUG00000013016CPSF39988.235ENSDARG00000027649cpsf39888.235Danio_rerio
ENSTGUG00000013016CPSF39993.713ENSDNOG00000008940CPSF39593.713Dasypus_novemcinctus
ENSTGUG00000013016CPSF39596.142ENSDORG00000014263Cpsf39996.142Dipodomys_ordii
ENSTGUG00000013016CPSF39966.422FBgn0261065Cpsf739966.422Drosophila_melanogaster
ENSTGUG00000013016CPSF39583.488ENSETEG00000003893CPSF39983.488Echinops_telfairi
ENSTGUG00000013016CPSF39978.775ENSEBUG00000009018cpsf39978.917Eptatretus_burgeri
ENSTGUG00000013016CPSF39995.595ENSEASG00005003970CPSF39995.595Equus_asinus_asinus
ENSTGUG00000013016CPSF39995.595ENSECAG00000019911CPSF39798.151Equus_caballus
ENSTGUG00000013016CPSF39980.029ENSEEUG00000015422CPSF39980.029Erinaceus_europaeus
ENSTGUG00000013016CPSF39988.218ENSELUG00000013775cpsf39888.218Esox_lucius
ENSTGUG00000013016CPSF39995.448ENSFCAG00000007852CPSF310095.209Felis_catus
ENSTGUG00000013016CPSF39599.691ENSFALG00000006572CPSF310099.691Ficedula_albicollis
ENSTGUG00000013016CPSF39994.109ENSFDAG00000006317CPSF39994.109Fukomys_damarensis
ENSTGUG00000013016CPSF39984.141ENSFHEG00000014774cpsf39984.141Fundulus_heteroclitus
ENSTGUG00000013016CPSF35968.460ENSFHEG00000012186CPSF39968.460Fundulus_heteroclitus
ENSTGUG00000013016CPSF39986.050ENSGMOG00000003157cpsf39986.050Gadus_morhua
ENSTGUG00000013016CPSF310097.368ENSGALG00000016424CPSF39997.368Gallus_gallus
ENSTGUG00000013016CPSF39282.063ENSGAFG00000019449cpsf39982.063Gambusia_affinis
ENSTGUG00000013016CPSF39987.830ENSGAFG00000008016CPSF39987.830Gambusia_affinis
ENSTGUG00000013016CPSF36895.931ENSGAGG00000025583CPSF39395.931Gopherus_agassizii
ENSTGUG00000013016CPSF39993.103ENSGGOG00000001757CPSF310095.118Gorilla_gorilla
ENSTGUG00000013016CPSF35979.753ENSHBUG00000014332CPSF39979.753Haplochromis_burtoni
ENSTGUG00000013016CPSF310085.380ENSHBUG00000001188cpsf39985.380Haplochromis_burtoni
ENSTGUG00000013016CPSF39993.833ENSHGLG00000000666CPSF39993.833Heterocephalus_glaber_female
ENSTGUG00000013016CPSF39993.833ENSHGLG00100007765CPSF39993.833Heterocephalus_glaber_male
ENSTGUG00000013016CPSF39985.652ENSHCOG00000015957CPSF39885.652Hippocampus_comes
ENSTGUG00000013016CPSF39985.066ENSHCOG00000007251cpsf39985.066Hippocampus_comes
ENSTGUG00000013016CPSF39986.471ENSIPUG00000023488cpsf39886.471Ictalurus_punctatus
ENSTGUG00000013016CPSF39995.448ENSSTOG00000004476CPSF39995.448Ictidomys_tridecemlineatus
ENSTGUG00000013016CPSF39994.436ENSJJAG00000023415Cpsf39994.436Jaculus_jaculus
ENSTGUG00000013016CPSF39987.262ENSKMAG00000007317CPSF39987.262Kryptolebias_marmoratus
ENSTGUG00000013016CPSF310084.064ENSKMAG00000002806cpsf39984.064Kryptolebias_marmoratus
ENSTGUG00000013016CPSF39979.676ENSLBEG00000020569cpsf39479.676Labrus_bergylta
ENSTGUG00000013016CPSF39588.479ENSLBEG00000013492CPSF39888.479Labrus_bergylta
ENSTGUG00000013016CPSF35579.088ENSLBEG00000015018-9979.088Labrus_bergylta
ENSTGUG00000013016CPSF39983.431ENSLACG00000008308CPSF39983.431Latimeria_chalumnae
ENSTGUG00000013016CPSF39989.296ENSLOCG00000016823cpsf39889.296Lepisosteus_oculatus
ENSTGUG00000013016CPSF39994.118ENSLAFG00000009467CPSF310094.118Loxodonta_africana
ENSTGUG00000013016CPSF39995.301ENSMFAG00000001339CPSF39995.301Macaca_fascicularis
ENSTGUG00000013016CPSF39595.054ENSMMUG00000018038CPSF310095.054Macaca_mulatta
ENSTGUG00000013016CPSF39984.581ENSMNEG00000039447CPSF39984.581Macaca_nemestrina
ENSTGUG00000013016CPSF39995.448ENSMLEG00000026825CPSF39995.448Mandrillus_leucophaeus
ENSTGUG00000013016CPSF39284.810ENSMAMG00000008835CPSF39984.810Mastacembelus_armatus
ENSTGUG00000013016CPSF39985.756ENSMAMG00000003076cpsf39985.756Mastacembelus_armatus
ENSTGUG00000013016CPSF310085.380ENSMZEG00005014358cpsf39985.380Maylandia_zebra
ENSTGUG00000013016CPSF39987.994ENSMZEG00005006258CPSF39987.994Maylandia_zebra
ENSTGUG00000013016CPSF39897.301ENSMGAG00000013995CPSF310097.301Meleagris_gallopavo
ENSTGUG00000013016CPSF35590.160ENSMAUG00000000166Cpsf310090.160Mesocricetus_auratus
ENSTGUG00000013016CPSF39990.162ENSMICG00000002363CPSF310089.375Microcebus_murinus
ENSTGUG00000013016CPSF39990.896ENSMOCG00000020067Cpsf39990.896Microtus_ochrogaster
ENSTGUG00000013016CPSF39482.016ENSMMOG00000018212CPSF39882.016Mola_mola
ENSTGUG00000013016CPSF38071.254ENSMMOG00000011923CPSF38477.857Mola_mola
ENSTGUG00000013016CPSF39993.895ENSMODG00000014703CPSF39993.895Monodelphis_domestica
ENSTGUG00000013016CPSF39383.125ENSMALG00000011474CPSF39983.125Monopterus_albus
ENSTGUG00000013016CPSF39985.903ENSMALG00000016416cpsf39985.903Monopterus_albus
ENSTGUG00000013016CPSF39994.714MGP_CAROLIEiJ_G0017640Cpsf39994.714Mus_caroli
ENSTGUG00000013016CPSF39994.714ENSMUSG00000054309Cpsf396100.000Mus_musculus
ENSTGUG00000013016CPSF39994.567MGP_PahariEiJ_G0029397Cpsf39994.567Mus_pahari
ENSTGUG00000013016CPSF39994.714MGP_SPRETEiJ_G0018481Cpsf39994.714Mus_spretus
ENSTGUG00000013016CPSF39995.448ENSMPUG00000013213CPSF39995.448Mustela_putorius_furo
ENSTGUG00000013016CPSF39994.721ENSMLUG00000010636CPSF39994.721Myotis_lucifugus
ENSTGUG00000013016CPSF39994.860ENSNGAG00000019836Cpsf39994.860Nannospalax_galili
ENSTGUG00000013016CPSF310085.234ENSNBRG00000004770cpsf39985.234Neolamprologus_brichardi
ENSTGUG00000013016CPSF39286.190ENSNBRG00000010525CPSF39986.190Neolamprologus_brichardi
ENSTGUG00000013016CPSF39995.301ENSNLEG00000013359CPSF310095.054Nomascus_leucogenys
ENSTGUG00000013016CPSF39963.436ENSMEUG00000013117-9963.436Notamacropus_eugenii
ENSTGUG00000013016CPSF39986.344ENSOPRG00000008902CPSF39986.344Ochotona_princeps
ENSTGUG00000013016CPSF39993.833ENSODEG00000003129CPSF39993.833Octodon_degus
ENSTGUG00000013016CPSF310085.673ENSONIG00000018812cpsf39985.673Oreochromis_niloticus
ENSTGUG00000013016CPSF38295.035ENSOANG00000008577CPSF310095.035Ornithorhynchus_anatinus
ENSTGUG00000013016CPSF39995.301ENSOCUG00000003728CPSF39995.301Oryctolagus_cuniculus
ENSTGUG00000013016CPSF310083.333ENSORLG00000018854cpsf39983.333Oryzias_latipes
ENSTGUG00000013016CPSF310083.187ENSORLG00020013331cpsf39983.187Oryzias_latipes_hni
ENSTGUG00000013016CPSF310083.333ENSORLG00015011017cpsf39983.333Oryzias_latipes_hsok
ENSTGUG00000013016CPSF310083.480ENSOMEG00000010647cpsf39583.480Oryzias_melastigma
ENSTGUG00000013016CPSF39985.609ENSOGAG00000001680CPSF39985.609Otolemur_garnettii
ENSTGUG00000013016CPSF39995.448ENSOARG00000015073CPSF39995.448Ovis_aries
ENSTGUG00000013016CPSF39995.448ENSPPAG00000042457CPSF39995.448Pan_paniscus
ENSTGUG00000013016CPSF39995.154ENSPPRG00000016790CPSF310094.900Panthera_pardus
ENSTGUG00000013016CPSF39995.147ENSPTIG00000003920CPSF310094.803Panthera_tigris_altaica
ENSTGUG00000013016CPSF39995.448ENSPTRG00000011638CPSF39995.448Pan_troglodytes
ENSTGUG00000013016CPSF39995.154ENSPANG00000016798CPSF39995.154Papio_anubis
ENSTGUG00000013016CPSF39989.691ENSPKIG00000023646cpsf39989.302Paramormyrops_kingsleyae
ENSTGUG00000013016CPSF39995.894ENSPSIG00000016144CPSF39995.894Pelodiscus_sinensis
ENSTGUG00000013016CPSF35978.272ENSPMGG00000015311CPSF39978.272Periophthalmus_magnuspinnatus
ENSTGUG00000013016CPSF38385.387ENSPMGG00000006141-9885.387Periophthalmus_magnuspinnatus
ENSTGUG00000013016CPSF39995.007ENSPEMG00000017668Cpsf39995.007Peromyscus_maniculatus_bairdii
ENSTGUG00000013016CPSF37890.706ENSPMAG00000004841cpsf39990.706Petromyzon_marinus
ENSTGUG00000013016CPSF39895.052ENSPCIG00000009823CPSF39895.552Phascolarctos_cinereus
ENSTGUG00000013016CPSF39987.537ENSPFOG00000010418-9987.537Poecilia_formosa
ENSTGUG00000013016CPSF310084.357ENSPFOG00000015922cpsf39984.357Poecilia_formosa
ENSTGUG00000013016CPSF310084.357ENSPLAG00000000882cpsf39984.357Poecilia_latipinna
ENSTGUG00000013016CPSF35980.941ENSPLAG00000021300-9980.941Poecilia_latipinna
ENSTGUG00000013016CPSF310084.503ENSPMEG00000018309cpsf39984.503Poecilia_mexicana
ENSTGUG00000013016CPSF39982.551ENSPREG00000004482CPSF39982.551Poecilia_reticulata
ENSTGUG00000013016CPSF39282.222ENSPREG00000014875cpsf39982.222Poecilia_reticulata
ENSTGUG00000013016CPSF39990.896ENSPPYG00000012666CPSF39990.896Pongo_abelii
ENSTGUG00000013016CPSF39562.191ENSPCAG00000015042CPSF39962.191Procavia_capensis
ENSTGUG00000013016CPSF39088.095ENSPCOG00000023016CPSF39988.095Propithecus_coquereli
ENSTGUG00000013016CPSF39995.582ENSPVAG00000005324CPSF39995.582Pteropus_vampyrus
ENSTGUG00000013016CPSF38090.328ENSPNYG00000021047CPSF39190.328Pundamilia_nyererei
ENSTGUG00000013016CPSF310085.380ENSPNYG00000004405cpsf39985.380Pundamilia_nyererei
ENSTGUG00000013016CPSF39987.647ENSPNAG00000023060cpsf39887.647Pygocentrus_nattereri
ENSTGUG00000013016CPSF39994.845ENSRNOG00000052418Cpsf39994.845Rattus_norvegicus
ENSTGUG00000013016CPSF39989.574ENSRBIG00000041615CPSF39990.726Rhinopithecus_bieti
ENSTGUG00000013016CPSF39995.448ENSRROG00000033792CPSF39995.448Rhinopithecus_roxellana
ENSTGUG00000013016CPSF39340.403YLR277CYSH19540.403Saccharomyces_cerevisiae
ENSTGUG00000013016CPSF39891.304ENSSBOG00000027263CPSF39791.304Saimiri_boliviensis_boliviensis
ENSTGUG00000013016CPSF39995.301ENSSHAG00000007024CPSF39995.301Sarcophilus_harrisii
ENSTGUG00000013016CPSF39989.736ENSSFOG00015002108cpsf39989.736Scleropages_formosus
ENSTGUG00000013016CPSF39586.943ENSSMAG00000020534CPSF39686.943Scophthalmus_maximus
ENSTGUG00000013016CPSF310085.234ENSSDUG00000002828cpsf39685.234Seriola_dumerili
ENSTGUG00000013016CPSF39987.555ENSSDUG00000018498CPSF39987.555Seriola_dumerili
ENSTGUG00000013016CPSF39987.555ENSSLDG00000005234CPSF39987.555Seriola_lalandi_dorsalis
ENSTGUG00000013016CPSF310085.234ENSSLDG00000008469cpsf39190.694Seriola_lalandi_dorsalis
ENSTGUG00000013016CPSF39978.267ENSSARG00000005186CPSF39978.267Sorex_araneus
ENSTGUG00000013016CPSF39894.188ENSSPUG00000015525CPSF39794.188Sphenodon_punctatus
ENSTGUG00000013016CPSF39987.116ENSSPAG00000002906CPSF39987.116Stegastes_partitus
ENSTGUG00000013016CPSF310085.234ENSSPAG00000018579cpsf39985.234Stegastes_partitus
ENSTGUG00000013016CPSF39995.735ENSSSCG00000020799CPSF39995.735Sus_scrofa
ENSTGUG00000013016CPSF35972.482ENSTRUG00000013905CPSF39972.482Takifugu_rubripes
ENSTGUG00000013016CPSF39985.191ENSTRUG00000007030cpsf39785.191Takifugu_rubripes
ENSTGUG00000013016CPSF38593.646ENSTBEG00000002707CPSF38493.646Tupaia_belangeri
ENSTGUG00000013016CPSF38784.409ENSTTRG00000000861CPSF38784.409Tursiops_truncatus
ENSTGUG00000013016CPSF39596.172ENSUAMG00000007535CPSF39496.172Ursus_americanus
ENSTGUG00000013016CPSF39595.363ENSUMAG00000003676CPSF310095.363Ursus_maritimus
ENSTGUG00000013016CPSF39393.533ENSVPAG00000008041CPSF310093.533Vicugna_pacos
ENSTGUG00000013016CPSF39995.595ENSVVUG00000002194CPSF39995.595Vulpes_vulpes
ENSTGUG00000013016CPSF39990.176ENSXETG00000008263cpsf39990.176Xenopus_tropicalis
ENSTGUG00000013016CPSF35479.515ENSXCOG00000000957-8779.515Xiphophorus_couchianus
ENSTGUG00000013016CPSF310084.357ENSXCOG00000019695cpsf39984.357Xiphophorus_couchianus
ENSTGUG00000013016CPSF310084.357ENSXMAG00000009784cpsf310083.926Xiphophorus_maculatus
ENSTGUG00000013016CPSF39987.683ENSXMAG00000027291CPSF39987.683Xiphophorus_maculatus

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