EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTGUG00000013442 (Gene tree)
Gene ID: -
Gene Symbol: URB1
Alias: C21orf108|KIAA0539|NPA1
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 36557 bases
Position: chr1:97555543-97592099
Accession: 17344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000013841	Npa1	PF11707.8	8.4e-86	1	1
ENSTGUP00000013840	Npa1	PF11707.8	1.3e-85	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000013999	URB1-201	5010	-	ENSTGUP00000013840	1670 (aa)	-	H0ZT94
ENSTGUT00000014000	URB1-202	4992	-	ENSTGUP00000013841	1664 (aa)	-	H0ZT95

Gene Model

Click here to download ENSTGUG00000013442's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000013442's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000013442	URB1	100	57.980	ENSG00000142207	URB1	73	58.313	Homo_sapiens
ENSTGUG00000013442	URB1	100	46.655	ENSAPOG00000020308	urb1	73	46.217	Acanthochromis_polyacanthus
ENSTGUG00000013442	URB1	100	57.143	ENSAMEG00000011998	URB1	73	57.203	Ailuropoda_melanoleuca
ENSTGUG00000013442	URB1	100	47.108	ENSACIG00000003248	urb1	74	47.108	Amphilophus_citrinellus
ENSTGUG00000013442	URB1	100	44.970	ENSAOCG00000010364	urb1	72	44.970	Amphiprion_ocellaris
ENSTGUG00000013442	URB1	96	54.026	ENSAPEG00000010758	urb1	73	54.026	Amphiprion_percula
ENSTGUG00000013442	URB1	100	47.919	ENSATEG00000011790	urb1	72	47.919	Anabas_testudineus
ENSTGUG00000013442	URB1	100	79.571	ENSAPLG00000012791	URB1	76	79.631	Anas_platyrhynchos
ENSTGUG00000013442	URB1	100	63.152	ENSACAG00000002817	URB1	73	63.152	Anolis_carolinensis
ENSTGUG00000013442	URB1	100	58.423	ENSANAG00000024617	URB1	73	58.423	Aotus_nancymaae
ENSTGUG00000013442	URB1	100	48.243	ENSACLG00000024865	urb1	74	48.333	Astatotilapia_calliptera
ENSTGUG00000013442	URB1	100	43.854	ENSAMXG00000012306	urb1	74	43.854	Astyanax_mexicanus
ENSTGUG00000013442	URB1	100	56.496	ENSBTAG00000012412	URB1	74	56.615	Bos_taurus
ENSTGUG00000013442	URB1	100	58.124	ENSCJAG00000009118	URB1	73	58.124	Callithrix_jacchus
ENSTGUG00000013442	URB1	100	58.343	ENSCAFG00000008892	URB1	73	58.343	Canis_familiaris
ENSTGUG00000013442	URB1	100	58.194	ENSCAFG00020025987	-	73	58.194	Canis_lupus_dingo
ENSTGUG00000013442	URB1	100	57.775	ENSCAFG00020025994	-	74	57.775	Canis_lupus_dingo
ENSTGUG00000013442	URB1	100	56.615	ENSCHIG00000015645	URB1	75	56.615	Capra_hircus
ENSTGUG00000013442	URB1	100	58.532	ENSTSYG00000013286	URB1	73	58.522	Carlito_syrichta
ENSTGUG00000013442	URB1	100	55.078	ENSCAPG00000015589	URB1	74	55.230	Cavia_aperea
ENSTGUG00000013442	URB1	100	56.478	ENSCPOG00000006748	URB1	73	56.631	Cavia_porcellus
ENSTGUG00000013442	URB1	100	58.039	ENSCCAG00000021299	URB1	73	58.039	Cebus_capucinus
ENSTGUG00000013442	URB1	100	58.577	ENSCATG00000042630	URB1	73	59.031	Cercocebus_atys
ENSTGUG00000013442	URB1	100	57.458	ENSCLAG00000005262	URB1	74	57.458	Chinchilla_lanigera
ENSTGUG00000013442	URB1	99	57.551	ENSCSAG00000009584	URB1	73	57.551	Chlorocebus_sabaeus
ENSTGUG00000013442	URB1	100	73.306	ENSCPBG00000006454	URB1	73	73.393	Chrysemys_picta_bellii
ENSTGUG00000013442	URB1	100	58.065	ENSCANG00000031088	URB1	73	58.518	Colobus_angolensis_palliatus
ENSTGUG00000013442	URB1	100	57.271	ENSCGRG00001010616	Urb1	74	57.330	Cricetulus_griseus_chok1gshd
ENSTGUG00000013442	URB1	100	56.921	ENSCGRG00000015840	Urb1	75	56.981	Cricetulus_griseus_crigri
ENSTGUG00000013442	URB1	100	46.631	ENSCSEG00000012616	urb1	74	46.631	Cynoglossus_semilaevis
ENSTGUG00000013442	URB1	97	53.216	ENSCVAG00000009076	urb1	88	53.216	Cyprinodon_variegatus
ENSTGUG00000013442	URB1	100	47.090	ENSDARG00000060308	urb1	74	47.418	Danio_rerio
ENSTGUG00000013442	URB1	100	58.313	ENSDNOG00000015586	URB1	86	58.313	Dasypus_novemcinctus
ENSTGUG00000013442	URB1	99	57.844	ENSDORG00000006735	Urb1	73	57.844	Dipodomys_ordii
ENSTGUG00000013442	URB1	95	63.029	ENSETEG00000009080	URB1	70	63.029	Echinops_telfairi
ENSTGUG00000013442	URB1	100	56.792	ENSEASG00005007711	URB1	71	64.706	Equus_asinus_asinus
ENSTGUG00000013442	URB1	96	64.994	ENSECAG00000013206	URB1	75	65.251	Equus_caballus
ENSTGUG00000013442	URB1	100	48.005	ENSELUG00000020516	urb1	73	48.100	Esox_lucius
ENSTGUG00000013442	URB1	100	57.570	ENSFCAG00000002177	URB1	73	57.656	Felis_catus
ENSTGUG00000013442	URB1	100	75.426	ENSFALG00000004636	URB1	75	75.426	Ficedula_albicollis
ENSTGUG00000013442	URB1	100	57.857	ENSFDAG00000007288	URB1	70	57.857	Fukomys_damarensis
ENSTGUG00000013442	URB1	100	46.122	ENSFHEG00000000202	urb1	74	46.467	Fundulus_heteroclitus
ENSTGUG00000013442	URB1	92	46.673	ENSGMOG00000001838	urb1	68	46.673	Gadus_morhua
ENSTGUG00000013442	URB1	100	79.929	ENSGALG00000015887	URB1	74	79.929	Gallus_gallus
ENSTGUG00000013442	URB1	96	52.693	ENSGAFG00000020694	urb1	72	52.693	Gambusia_affinis
ENSTGUG00000013442	URB1	100	47.741	ENSGACG00000011703	urb1	74	47.757	Gasterosteus_aculeatus
ENSTGUG00000013442	URB1	100	72.652	ENSGAGG00000022544	URB1	73	72.652	Gopherus_agassizii
ENSTGUG00000013442	URB1	100	58.279	ENSGGOG00000000285	URB1	73	58.279	Gorilla_gorilla
ENSTGUG00000013442	URB1	100	48.243	ENSHBUG00000001904	urb1	74	48.333	Haplochromis_burtoni
ENSTGUG00000013442	URB1	100	56.583	ENSHGLG00000004907	URB1	74	56.583	Heterocephalus_glaber_female
ENSTGUG00000013442	URB1	100	57.475	ENSHGLG00100010749	URB1	74	57.475	Heterocephalus_glaber_male
ENSTGUG00000013442	URB1	86	50.147	ENSHCOG00000018683	urb1	81	54.779	Hippocampus_comes
ENSTGUG00000013442	URB1	100	43.538	ENSIPUG00000014721	urb1	74	43.776	Ictalurus_punctatus
ENSTGUG00000013442	URB1	100	58.617	ENSSTOG00000004539	URB1	74	58.617	Ictidomys_tridecemlineatus
ENSTGUG00000013442	URB1	100	46.473	ENSKMAG00000006001	urb1	83	49.364	Kryptolebias_marmoratus
ENSTGUG00000013442	URB1	100	45.221	ENSLBEG00000027208	urb1	74	45.221	Labrus_bergylta
ENSTGUG00000013442	URB1	100	53.477	ENSLACG00000017059	URB1	73	53.630	Latimeria_chalumnae
ENSTGUG00000013442	URB1	97	50.519	ENSLOCG00000009190	urb1	71	50.519	Lepisosteus_oculatus
ENSTGUG00000013442	URB1	100	58.925	ENSLAFG00000010407	URB1	73	58.925	Loxodonta_africana
ENSTGUG00000013442	URB1	100	57.980	ENSMFAG00000034391	URB1	71	58.433	Macaca_fascicularis
ENSTGUG00000013442	URB1	100	57.800	ENSMMUG00000010295	URB1	73	58.254	Macaca_mulatta
ENSTGUG00000013442	URB1	100	56.938	ENSMNEG00000032981	URB1	73	57.356	Macaca_nemestrina
ENSTGUG00000013442	URB1	100	58.039	ENSMLEG00000041435	URB1	73	58.493	Mandrillus_leucophaeus
ENSTGUG00000013442	URB1	100	47.696	ENSMAMG00000011238	urb1	72	47.761	Mastacembelus_armatus
ENSTGUG00000013442	URB1	100	44.754	ENSMZEG00005011862	urb1	73	44.754	Maylandia_zebra
ENSTGUG00000013442	URB1	100	80.119	ENSMGAG00000014512	URB1	75	80.119	Meleagris_gallopavo
ENSTGUG00000013442	URB1	90	60.708	ENSMAUG00000010516	Urb1	71	60.708	Mesocricetus_auratus
ENSTGUG00000013442	URB1	100	57.322	ENSMICG00000016424	URB1	73	57.322	Microcebus_murinus
ENSTGUG00000013442	URB1	100	56.930	ENSMOCG00000012613	Urb1	74	56.930	Microtus_ochrogaster
ENSTGUG00000013442	URB1	100	59.916	ENSMODG00000021076	URB1	73	59.916	Monodelphis_domestica
ENSTGUG00000013442	URB1	100	46.802	ENSMALG00000017411	urb1	73	46.802	Monopterus_albus
ENSTGUG00000013442	URB1	100	56.947	MGP_CAROLIEiJ_G0020948	Urb1	73	56.947	Mus_caroli
ENSTGUG00000013442	URB1	100	56.768	ENSMUSG00000039929	Urb1	73	56.768	Mus_musculus
ENSTGUG00000013442	URB1	100	56.828	MGP_PahariEiJ_G0016653	Urb1	73	56.887	Mus_pahari
ENSTGUG00000013442	URB1	100	56.828	MGP_SPRETEiJ_G0021854	Urb1	73	56.828	Mus_spretus
ENSTGUG00000013442	URB1	100	57.810	ENSMPUG00000001123	URB1	74	57.810	Mustela_putorius_furo
ENSTGUG00000013442	URB1	100	56.052	ENSNGAG00000001905	Urb1	73	56.052	Nannospalax_galili
ENSTGUG00000013442	URB1	81	45.928	ENSNBRG00000001049	urb1	72	45.928	Neolamprologus_brichardi
ENSTGUG00000013442	URB1	100	56.485	ENSNLEG00000026872	URB1	73	56.818	Nomascus_leucogenys
ENSTGUG00000013442	URB1	89	59.953	ENSMEUG00000010828	URB1	68	58.427	Notamacropus_eugenii
ENSTGUG00000013442	URB1	100	55.364	ENSOPRG00000013482	URB1	75	55.602	Ochotona_princeps
ENSTGUG00000013442	URB1	100	57.245	ENSODEG00000002587	URB1	74	57.245	Octodon_degus
ENSTGUG00000013442	URB1	100	48.393	ENSONIG00000005599	urb1	74	48.543	Oreochromis_niloticus
ENSTGUG00000013442	URB1	100	58.159	ENSOCUG00000009381	URB1	73	58.159	Oryctolagus_cuniculus
ENSTGUG00000013442	URB1	100	46.975	ENSORLG00000003429	urb1	74	47.181	Oryzias_latipes
ENSTGUG00000013442	URB1	100	46.951	ENSORLG00020013785	urb1	77	47.156	Oryzias_latipes_hni
ENSTGUG00000013442	URB1	100	45.594	ENSORLG00015019421	urb1	79	45.182	Oryzias_latipes_hsok
ENSTGUG00000013442	URB1	82	56.410	ENSOMEG00000002094	urb1	79	56.410	Oryzias_melastigma
ENSTGUG00000013442	URB1	100	58.458	ENSOGAG00000017140	URB1	74	58.458	Otolemur_garnettii
ENSTGUG00000013442	URB1	96	56.298	ENSOARG00000013679	URB1	73	56.298	Ovis_aries
ENSTGUG00000013442	URB1	100	58.039	ENSPPAG00000003423	URB1	73	58.373	Pan_paniscus
ENSTGUG00000013442	URB1	100	57.989	ENSPPRG00000023131	URB1	73	57.989	Panthera_pardus
ENSTGUG00000013442	URB1	100	56.246	ENSPTIG00000016125	URB1	79	56.246	Panthera_tigris_altaica
ENSTGUG00000013442	URB1	100	57.920	ENSPTRG00000013852	URB1	73	58.254	Pan_troglodytes
ENSTGUG00000013442	URB1	100	58.039	ENSPANG00000021964	URB1	73	58.493	Papio_anubis
ENSTGUG00000013442	URB1	100	48.866	ENSPKIG00000003683	urb1	73	49.106	Paramormyrops_kingsleyae
ENSTGUG00000013442	URB1	99	57.023	ENSPEMG00000021205	Urb1	73	57.023	Peromyscus_maniculatus_bairdii
ENSTGUG00000013442	URB1	95	34.263	ENSPMAG00000009733	URB1	90	34.445	Petromyzon_marinus
ENSTGUG00000013442	URB1	100	59.618	ENSPCIG00000016350	URB1	75	59.618	Phascolarctos_cinereus
ENSTGUG00000013442	URB1	100	47.212	ENSPLAG00000004371	urb1	76	47.272	Poecilia_latipinna
ENSTGUG00000013442	URB1	100	47.331	ENSPMEG00000006634	urb1	74	47.390	Poecilia_mexicana
ENSTGUG00000013442	URB1	100	47.156	ENSPREG00000013453	urb1	74	47.156	Poecilia_reticulata
ENSTGUG00000013442	URB1	100	57.356	ENSPPYG00000011359	URB1	73	57.690	Pongo_abelii
ENSTGUG00000013442	URB1	99	52.174	ENSPCAG00000007430	URB1	73	52.174	Procavia_capensis
ENSTGUG00000013442	URB1	100	57.860	ENSPCOG00000022695	URB1	73	58.074	Propithecus_coquereli
ENSTGUG00000013442	URB1	100	57.485	ENSPVAG00000000889	URB1	73	57.485	Pteropus_vampyrus
ENSTGUG00000013442	URB1	100	47.605	ENSPNYG00000010589	urb1	74	47.605	Pundamilia_nyererei
ENSTGUG00000013442	URB1	100	43.798	ENSPNAG00000019324	urb1	74	44.095	Pygocentrus_nattereri
ENSTGUG00000013442	URB1	100	56.112	ENSRNOG00000002080	Urb1	73	56.112	Rattus_norvegicus
ENSTGUG00000013442	URB1	100	57.860	ENSRBIG00000033122	URB1	73	58.313	Rhinopithecus_bieti
ENSTGUG00000013442	URB1	100	57.860	ENSRROG00000040237	URB1	73	58.313	Rhinopithecus_roxellana
ENSTGUG00000013442	URB1	100	57.945	ENSSBOG00000027672	URB1	73	57.945	Saimiri_boliviensis_boliviensis
ENSTGUG00000013442	URB1	100	59.750	ENSSHAG00000005140	URB1	73	59.750	Sarcophilus_harrisii
ENSTGUG00000013442	URB1	100	49.256	ENSSFOG00015000339	urb1	79	49.257	Scleropages_formosus
ENSTGUG00000013442	URB1	100	48.349	ENSSMAG00000003782	urb1	74	48.553	Scophthalmus_maximus
ENSTGUG00000013442	URB1	100	49.139	ENSSDUG00000012313	urb1	74	49.139	Seriola_dumerili
ENSTGUG00000013442	URB1	100	48.960	ENSSLDG00000023179	urb1	74	48.960	Seriola_lalandi_dorsalis
ENSTGUG00000013442	URB1	100	66.726	ENSSPUG00000012447	URB1	73	66.726	Sphenodon_punctatus
ENSTGUG00000013442	URB1	100	47.927	ENSSPAG00000006325	urb1	74	47.927	Stegastes_partitus
ENSTGUG00000013442	URB1	100	57.750	ENSSSCG00000032024	URB1	74	57.775	Sus_scrofa
ENSTGUG00000013442	URB1	100	47.628	ENSTRUG00000009372	urb1	74	47.628	Takifugu_rubripes
ENSTGUG00000013442	URB1	100	47.839	ENSTNIG00000016277	urb1	75	47.839	Tetraodon_nigroviridis
ENSTGUG00000013442	URB1	75	67.553	ENSTBEG00000010044	URB1	55	67.553	Tupaia_belangeri
ENSTGUG00000013442	URB1	89	58.096	ENSTTRG00000007712	URB1	67	58.096	Tursiops_truncatus
ENSTGUG00000013442	URB1	100	57.271	ENSUAMG00000012231	URB1	73	57.271	Ursus_americanus
ENSTGUG00000013442	URB1	96	63.544	ENSUMAG00000017419	URB1	78	56.433	Ursus_maritimus
ENSTGUG00000013442	URB1	69	71.528	ENSVPAG00000001164	URB1	51	71.528	Vicugna_pacos
ENSTGUG00000013442	URB1	100	58.693	ENSVVUG00000000551	URB1	74	58.577	Vulpes_vulpes
ENSTGUG00000013442	URB1	100	56.688	ENSXETG00000009895	urb1	73	56.688	Xenopus_tropicalis
ENSTGUG00000013442	URB1	100	46.254	ENSXCOG00000005500	urb1	77	46.254	Xiphophorus_couchianus
ENSTGUG00000013442	URB1	100	46.702	ENSXMAG00000007253	urb1	77	46.702	Xiphophorus_maculatus