EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTGUG00000016823 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm8
Gene Type: protein_coding
Species: Taeniopygia_guttata
Status: putative
Strand: Minus strand
Length: 4238 bases
Position: chrUn:115692801-115697038
Accession: 100230262
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTGUP00000017118	LSM	PF01423.22	3.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTGUT00000017490	-	456	XM_002189756	ENSTGUP00000017118	96 (aa)	XP_002189792	H1A2K6

Gene Model

Click here to download ENSTGUG00000016823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTGUG00000016823's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTGUG00000016823	-	100	98.958	ENSTGUG00000004730	-	100	98.958
ENSTGUG00000016823	-	73	36.842	ENSTGUG00000000067	LSM7	73	36.842
ENSTGUG00000016823	-	92	32.955	ENSTGUG00000004793	LSM1	65	32.955

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTGUG00000016823	-	100	96.875	ENSG00000128534	LSM8	100	97.333	Homo_sapiens
ENSTGUG00000016823	-	100	92.708	ENSAPOG00000008649	lsm8	100	92.708	Acanthochromis_polyacanthus
ENSTGUG00000016823	-	100	96.875	ENSAMEG00000001162	LSM8	100	96.875	Ailuropoda_melanoleuca
ENSTGUG00000016823	-	78	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSTGUG00000016823	-	100	92.708	ENSAOCG00000013926	lsm8	100	92.708	Amphiprion_ocellaris
ENSTGUG00000016823	-	100	92.708	ENSAPEG00000023502	lsm8	100	92.708	Amphiprion_percula
ENSTGUG00000016823	-	78	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSTGUG00000016823	-	95	91.489	ENSAPLG00000005115	LSM8	95	91.489	Anas_platyrhynchos
ENSTGUG00000016823	-	100	96.875	ENSANAG00000027771	LSM8	100	96.875	Aotus_nancymaae
ENSTGUG00000016823	-	100	92.708	ENSACLG00000011253	lsm8	100	92.708	Astatotilapia_calliptera
ENSTGUG00000016823	-	100	94.792	ENSAMXG00000042902	lsm8	100	94.792	Astyanax_mexicanus
ENSTGUG00000016823	-	100	96.875	ENSBTAG00000012649	LSM8	100	96.875	Bos_taurus
ENSTGUG00000016823	-	98	58.511	WBGene00003082	lsm-8	96	58.511	Caenorhabditis_elegans
ENSTGUG00000016823	-	100	96.875	ENSCJAG00000046406	LSM8	100	96.875	Callithrix_jacchus
ENSTGUG00000016823	-	98	97.872	ENSCAFG00000016459	LSM8	95	97.872	Canis_familiaris
ENSTGUG00000016823	-	100	96.875	ENSCAFG00020007643	-	100	96.875	Canis_lupus_dingo
ENSTGUG00000016823	-	89	96.471	ENSCAFG00020012800	-	66	96.471	Canis_lupus_dingo
ENSTGUG00000016823	-	89	97.647	ENSCHIG00000014201	LSM8	90	97.647	Capra_hircus
ENSTGUG00000016823	-	100	96.875	ENSTSYG00000032434	LSM8	100	96.875	Carlito_syrichta
ENSTGUG00000016823	-	77	95.946	ENSCAPG00000008253	LSM8	100	95.946	Cavia_aperea
ENSTGUG00000016823	-	100	96.875	ENSCPOG00000035673	LSM8	100	96.875	Cavia_porcellus
ENSTGUG00000016823	-	100	96.875	ENSCCAG00000021329	LSM8	100	96.875	Cebus_capucinus
ENSTGUG00000016823	-	100	96.875	ENSCATG00000045302	LSM8	100	96.875	Cercocebus_atys
ENSTGUG00000016823	-	100	96.875	ENSCLAG00000003726	LSM8	100	96.875	Chinchilla_lanigera
ENSTGUG00000016823	-	100	92.708	ENSCSAG00000019007	-	100	92.708	Chlorocebus_sabaeus
ENSTGUG00000016823	-	100	96.875	ENSCSAG00000010802	-	100	96.875	Chlorocebus_sabaeus
ENSTGUG00000016823	-	89	97.647	ENSCPBG00000008154	LSM8	87	97.647	Chrysemys_picta_bellii
ENSTGUG00000016823	-	100	75.000	ENSCING00000024877	-	100	75.000	Ciona_intestinalis
ENSTGUG00000016823	-	100	96.875	ENSCANG00000040728	LSM8	100	96.875	Colobus_angolensis_palliatus
ENSTGUG00000016823	-	100	96.875	ENSCGRG00001000450	Lsm8	100	96.875	Cricetulus_griseus_chok1gshd
ENSTGUG00000016823	-	89	97.647	ENSCGRG00000005587	Lsm8	100	97.647	Cricetulus_griseus_crigri
ENSTGUG00000016823	-	100	81.250	ENSCSEG00000004164	lsm8	100	81.250	Cynoglossus_semilaevis
ENSTGUG00000016823	-	100	91.667	ENSCVAG00000020547	lsm8	100	91.667	Cyprinodon_variegatus
ENSTGUG00000016823	-	100	91.667	ENSDARG00000091656	lsm8	100	91.667	Danio_rerio
ENSTGUG00000016823	-	100	96.875	ENSDNOG00000034613	LSM8	100	96.875	Dasypus_novemcinctus
ENSTGUG00000016823	-	100	96.875	ENSDORG00000027868	Lsm8	100	96.875	Dipodomys_ordii
ENSTGUG00000016823	-	98	70.213	FBgn0035271	CG2021	99	70.213	Drosophila_melanogaster
ENSTGUG00000016823	-	100	97.917	ENSETEG00000011594	LSM8	100	97.917	Echinops_telfairi
ENSTGUG00000016823	-	77	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSTGUG00000016823	-	100	96.875	ENSEASG00005008932	LSM8	62	96.875	Equus_asinus_asinus
ENSTGUG00000016823	-	89	97.647	ENSECAG00000024025	LSM8	77	97.647	Equus_caballus
ENSTGUG00000016823	-	100	91.667	ENSELUG00000010138	lsm8	100	91.667	Esox_lucius
ENSTGUG00000016823	-	83	73.750	ENSFCAG00000044794	-	81	73.750	Felis_catus
ENSTGUG00000016823	-	100	96.875	ENSFCAG00000036620	-	100	96.875	Felis_catus
ENSTGUG00000016823	-	100	97.917	ENSFALG00000010023	LSM8	100	97.917	Ficedula_albicollis
ENSTGUG00000016823	-	100	96.875	ENSFDAG00000019530	LSM8	100	96.875	Fukomys_damarensis
ENSTGUG00000016823	-	100	92.708	ENSFHEG00000013729	lsm8	100	92.708	Fundulus_heteroclitus
ENSTGUG00000016823	-	100	97.917	ENSGALG00000009110	LSM8	100	97.917	Gallus_gallus
ENSTGUG00000016823	-	100	91.667	ENSGAFG00000001135	lsm8	100	91.667	Gambusia_affinis
ENSTGUG00000016823	-	100	96.875	ENSGAGG00000017366	LSM8	100	96.875	Gopherus_agassizii
ENSTGUG00000016823	-	100	96.875	ENSGGOG00000041883	LSM8	100	96.875	Gorilla_gorilla
ENSTGUG00000016823	-	100	92.708	ENSHBUG00000003646	lsm8	100	92.708	Haplochromis_burtoni
ENSTGUG00000016823	-	71	97.059	ENSHGLG00000001988	-	99	97.059	Heterocephalus_glaber_female
ENSTGUG00000016823	-	100	90.625	ENSHGLG00000019782	-	100	90.625	Heterocephalus_glaber_female
ENSTGUG00000016823	-	98	95.745	ENSHGLG00100003934	-	94	95.745	Heterocephalus_glaber_male
ENSTGUG00000016823	-	100	92.708	ENSHGLG00100012166	-	100	92.708	Heterocephalus_glaber_male
ENSTGUG00000016823	-	100	91.667	ENSHCOG00000005037	lsm8	100	91.667	Hippocampus_comes
ENSTGUG00000016823	-	100	94.792	ENSIPUG00000019811	NAA38	100	94.792	Ictalurus_punctatus
ENSTGUG00000016823	-	100	96.875	ENSSTOG00000009039	LSM8	100	96.875	Ictidomys_tridecemlineatus
ENSTGUG00000016823	-	92	85.227	ENSSTOG00000034801	-	81	85.227	Ictidomys_tridecemlineatus
ENSTGUG00000016823	-	100	96.875	ENSJJAG00000009031	Lsm8	99	96.875	Jaculus_jaculus
ENSTGUG00000016823	-	100	92.708	ENSKMAG00000018983	lsm8	100	92.708	Kryptolebias_marmoratus
ENSTGUG00000016823	-	100	93.750	ENSLACG00000010231	LSM8	100	93.750	Latimeria_chalumnae
ENSTGUG00000016823	-	100	93.750	ENSLOCG00000015580	lsm8	100	93.750	Lepisosteus_oculatus
ENSTGUG00000016823	-	100	95.876	ENSLAFG00000011242	LSM8	100	95.876	Loxodonta_africana
ENSTGUG00000016823	-	100	92.708	ENSMFAG00000013044	-	100	92.708	Macaca_fascicularis
ENSTGUG00000016823	-	100	96.875	ENSMFAG00000035798	LSM8	100	96.875	Macaca_fascicularis
ENSTGUG00000016823	-	100	96.875	ENSMMUG00000046401	LSM8	100	94.595	Macaca_mulatta
ENSTGUG00000016823	-	100	96.875	ENSMNEG00000036764	-	100	96.875	Macaca_nemestrina
ENSTGUG00000016823	-	78	93.333	ENSMNEG00000011141	-	100	93.333	Macaca_nemestrina
ENSTGUG00000016823	-	100	81.250	ENSMLEG00000039324	-	100	81.250	Mandrillus_leucophaeus
ENSTGUG00000016823	-	100	96.875	ENSMLEG00000035828	-	100	96.875	Mandrillus_leucophaeus
ENSTGUG00000016823	-	78	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSTGUG00000016823	-	100	92.708	ENSMZEG00005019138	lsm8	100	92.708	Maylandia_zebra
ENSTGUG00000016823	-	100	97.917	ENSMGAG00000008808	LSM8	100	97.917	Meleagris_gallopavo
ENSTGUG00000016823	-	75	90.278	ENSMAUG00000020287	-	100	87.838	Mesocricetus_auratus
ENSTGUG00000016823	-	100	77.083	ENSMAUG00000015356	-	100	77.083	Mesocricetus_auratus
ENSTGUG00000016823	-	100	90.625	ENSMAUG00000015721	-	100	90.625	Mesocricetus_auratus
ENSTGUG00000016823	-	100	96.875	ENSMICG00000042730	LSM8	100	96.875	Microcebus_murinus
ENSTGUG00000016823	-	100	96.875	ENSMOCG00000001688	Lsm8	100	96.875	Microtus_ochrogaster
ENSTGUG00000016823	-	78	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSTGUG00000016823	-	76	85.333	ENSMODG00000015729	LSM8	96	85.333	Monodelphis_domestica
ENSTGUG00000016823	-	100	93.750	ENSMALG00000000405	lsm8	100	93.750	Monopterus_albus
ENSTGUG00000016823	-	100	96.875	MGP_CAROLIEiJ_G0028125	-	100	96.875	Mus_caroli
ENSTGUG00000016823	-	100	96.875	ENSMUSG00000044155	Lsm8	100	96.875	Mus_musculus
ENSTGUG00000016823	-	100	96.875	MGP_PahariEiJ_G0021881	Lsm8	100	97.333	Mus_pahari
ENSTGUG00000016823	-	100	96.875	MGP_SPRETEiJ_G0029125	-	100	96.875	Mus_spretus
ENSTGUG00000016823	-	100	96.875	ENSMLUG00000006837	-	100	96.875	Myotis_lucifugus
ENSTGUG00000016823	-	100	95.833	ENSMLUG00000027762	-	100	95.833	Myotis_lucifugus
ENSTGUG00000016823	-	100	96.875	ENSNGAG00000016554	Lsm8	100	96.875	Nannospalax_galili
ENSTGUG00000016823	-	100	92.708	ENSNBRG00000014441	lsm8	100	92.708	Neolamprologus_brichardi
ENSTGUG00000016823	-	100	96.875	ENSNLEG00000011768	LSM8	100	96.875	Nomascus_leucogenys
ENSTGUG00000016823	-	100	85.417	ENSMEUG00000007801	LSM8	100	85.417	Notamacropus_eugenii
ENSTGUG00000016823	-	89	97.647	ENSOPRG00000014809	LSM8	100	97.647	Ochotona_princeps
ENSTGUG00000016823	-	100	96.875	ENSODEG00000000418	-	100	96.875	Octodon_degus
ENSTGUG00000016823	-	90	81.395	ENSODEG00000020290	-	100	81.395	Octodon_degus
ENSTGUG00000016823	-	100	95.833	ENSOANG00000014536	LSM8	100	95.833	Ornithorhynchus_anatinus
ENSTGUG00000016823	-	100	95.876	ENSOCUG00000017359	LSM8	100	95.876	Oryctolagus_cuniculus
ENSTGUG00000016823	-	100	82.292	ENSORLG00000017432	lsm8	100	82.292	Oryzias_latipes
ENSTGUG00000016823	-	100	82.292	ENSORLG00020004376	lsm8	100	82.292	Oryzias_latipes_hni
ENSTGUG00000016823	-	100	92.708	ENSORLG00015003757	lsm8	100	92.708	Oryzias_latipes_hsok
ENSTGUG00000016823	-	100	80.208	ENSOMEG00000022509	lsm8	100	81.250	Oryzias_melastigma
ENSTGUG00000016823	-	100	96.875	ENSOGAG00000013377	LSM8	100	96.875	Otolemur_garnettii
ENSTGUG00000016823	-	100	96.875	ENSOARG00000017974	LSM8	100	96.875	Ovis_aries
ENSTGUG00000016823	-	78	97.333	ENSPPAG00000043228	-	100	97.333	Pan_paniscus
ENSTGUG00000016823	-	100	96.875	ENSPPRG00000006444	LSM8	100	96.875	Panthera_pardus
ENSTGUG00000016823	-	100	96.875	ENSPTIG00000004722	LSM8	100	96.875	Panthera_tigris_altaica
ENSTGUG00000016823	-	78	97.333	ENSPTRG00000046596	-	100	97.333	Pan_troglodytes
ENSTGUG00000016823	-	100	96.875	ENSPANG00000035470	-	100	96.875	Papio_anubis
ENSTGUG00000016823	-	100	90.625	ENSPANG00000019395	-	100	90.625	Papio_anubis
ENSTGUG00000016823	-	89	97.647	ENSPKIG00000006092	lsm8	86	97.647	Paramormyrops_kingsleyae
ENSTGUG00000016823	-	78	97.333	ENSPSIG00000017054	LSM8	100	97.333	Pelodiscus_sinensis
ENSTGUG00000016823	-	78	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSTGUG00000016823	-	77	94.595	ENSPEMG00000009153	Lsm8	100	94.595	Peromyscus_maniculatus_bairdii
ENSTGUG00000016823	-	97	97.849	ENSPCIG00000021467	LSM8	98	97.849	Phascolarctos_cinereus
ENSTGUG00000016823	-	100	91.667	ENSPFOG00000012340	lsm8	100	91.667	Poecilia_formosa
ENSTGUG00000016823	-	100	85.417	ENSPLAG00000000516	lsm8	100	85.417	Poecilia_latipinna
ENSTGUG00000016823	-	100	91.667	ENSPMEG00000022567	lsm8	100	91.667	Poecilia_mexicana
ENSTGUG00000016823	-	76	85.000	ENSPREG00000005527	lsm8	72	85.000	Poecilia_reticulata
ENSTGUG00000016823	-	100	96.875	ENSPPYG00000017942	LSM8	100	96.875	Pongo_abelii
ENSTGUG00000016823	-	100	96.875	ENSPCOG00000003309	-	100	96.875	Propithecus_coquereli
ENSTGUG00000016823	-	97	77.419	ENSPCOG00000017982	-	97	77.419	Propithecus_coquereli
ENSTGUG00000016823	-	89	96.471	ENSPVAG00000000990	LSM8	100	96.471	Pteropus_vampyrus
ENSTGUG00000016823	-	100	92.708	ENSPNYG00000011448	lsm8	100	92.708	Pundamilia_nyererei
ENSTGUG00000016823	-	100	94.792	ENSPNAG00000010252	lsm8	100	94.792	Pygocentrus_nattereri
ENSTGUG00000016823	-	100	96.875	ENSRNOG00000058677	Lsm8	100	96.875	Rattus_norvegicus
ENSTGUG00000016823	-	100	96.875	ENSRBIG00000032851	LSM8	100	96.875	Rhinopithecus_bieti
ENSTGUG00000016823	-	100	96.875	ENSRROG00000039618	LSM8	100	96.875	Rhinopithecus_roxellana
ENSTGUG00000016823	-	100	96.875	ENSSBOG00000023223	LSM8	100	96.875	Saimiri_boliviensis_boliviensis
ENSTGUG00000016823	-	100	96.875	ENSSHAG00000018435	-	100	96.875	Sarcophilus_harrisii
ENSTGUG00000016823	-	100	91.667	ENSSFOG00015004412	lsm8	100	91.667	Scleropages_formosus
ENSTGUG00000016823	-	78	94.667	ENSSMAG00000009458	lsm8	100	94.667	Scophthalmus_maximus
ENSTGUG00000016823	-	100	92.708	ENSSDUG00000014702	lsm8	100	92.708	Seriola_dumerili
ENSTGUG00000016823	-	78	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSTGUG00000016823	-	75	97.222	ENSSARG00000009628	-	100	97.222	Sorex_araneus
ENSTGUG00000016823	-	100	96.875	ENSSPUG00000017419	LSM8	100	96.875	Sphenodon_punctatus
ENSTGUG00000016823	-	100	92.708	ENSSPAG00000021422	lsm8	100	92.708	Stegastes_partitus
ENSTGUG00000016823	-	100	96.875	ENSSSCG00000021652	LSM8	100	96.875	Sus_scrofa
ENSTGUG00000016823	-	100	92.708	ENSTRUG00000025192	lsm8	100	92.708	Takifugu_rubripes
ENSTGUG00000016823	-	100	92.708	ENSTNIG00000002864	lsm8	100	92.708	Tetraodon_nigroviridis
ENSTGUG00000016823	-	100	96.875	ENSTTRG00000001023	LSM8	100	96.875	Tursiops_truncatus
ENSTGUG00000016823	-	92	94.318	ENSUAMG00000006943	-	92	94.318	Ursus_americanus
ENSTGUG00000016823	-	92	94.318	ENSUMAG00000003073	LSM8	94	94.318	Ursus_maritimus
ENSTGUG00000016823	-	100	96.875	ENSVPAG00000001530	LSM8	100	96.875	Vicugna_pacos
ENSTGUG00000016823	-	78	96.000	ENSVVUG00000013248	-	82	96.000	Vulpes_vulpes
ENSTGUG00000016823	-	93	96.629	ENSXETG00000021829	lsm8	92	96.629	Xenopus_tropicalis
ENSTGUG00000016823	-	100	89.583	ENSXCOG00000012938	lsm8	100	89.583	Xiphophorus_couchianus
ENSTGUG00000016823	-	100	91.667	ENSXMAG00000025919	lsm8	100	91.667	Xiphophorus_maculatus