EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000000450 (Gene tree)
Gene ID: -
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein a
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 2885 bases
Position: chr15:4909000-4911884
Accession: ZDB-GENE-050417-329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000001653	RRM_1	PF00076.22	2.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000003090	-	1368	-	ENSTNIP00000001653	180 (aa)	-	H3C087

Gene Model

Click here to download ENSTNIG00000000450's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000000450's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000000450	cirbpa	81	52.113	ENSTNIG00000015047	hnrnpa1b	60	50.000
ENSTNIG00000000450	cirbpa	81	38.028	ENSTNIG00000010512	hnrnpaba	50	38.028
ENSTNIG00000000450	cirbpa	52	37.931	ENSTNIG00000013499	hnrnpd	60	39.080
ENSTNIG00000000450	cirbpa	53	40.244	ENSTNIG00000007398	-	60	42.105

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000000450	cirbpa	100	74.863	ENSACIG00000016116	cirbpa	100	72.131	Amphilophus_citrinellus
ENSTNIG00000000450	cirbpa	100	64.737	ENSAOCG00000016212	cirbpa	100	66.310	Amphiprion_ocellaris
ENSTNIG00000000450	cirbpa	100	65.445	ENSAPEG00000011989	cirbpa	100	68.617	Amphiprion_percula
ENSTNIG00000000450	cirbpa	100	80.874	ENSATEG00000014985	cirbpa	100	80.874	Anabas_testudineus
ENSTNIG00000000450	cirbpa	100	77.049	ENSACLG00000002094	-	100	74.863	Astatotilapia_calliptera
ENSTNIG00000000450	cirbpa	100	55.288	ENSAMXG00000015612	cirbpb	82	58.470	Astyanax_mexicanus
ENSTNIG00000000450	cirbpa	100	61.538	ENSCSEG00000014344	cirbpa	100	62.564	Cynoglossus_semilaevis
ENSTNIG00000000450	cirbpa	100	71.892	ENSCVAG00000004853	cirbpa	100	71.351	Cyprinodon_variegatus
ENSTNIG00000000450	cirbpa	99	72.678	ENSFHEG00000002580	cirbpa	100	75.410	Fundulus_heteroclitus
ENSTNIG00000000450	cirbpa	99	53.202	ENSGMOG00000007179	cirbpb	98	50.481	Gadus_morhua
ENSTNIG00000000450	cirbpa	100	70.811	ENSGAFG00000008654	cirbpa	100	71.351	Gambusia_affinis
ENSTNIG00000000450	cirbpa	100	64.062	ENSGACG00000015206	cirbpa	100	63.351	Gasterosteus_aculeatus
ENSTNIG00000000450	cirbpa	100	72.826	ENSHBUG00000022060	cirbpa	100	74.457	Haplochromis_burtoni
ENSTNIG00000000450	cirbpa	100	71.351	ENSKMAG00000005905	cirbpa	100	70.879	Kryptolebias_marmoratus
ENSTNIG00000000450	cirbpa	100	62.431	ENSLBEG00000000292	cirbpa	100	61.878	Labrus_bergylta
ENSTNIG00000000450	cirbpa	100	75.410	ENSMAMG00000010168	cirbpa	100	78.689	Mastacembelus_armatus
ENSTNIG00000000450	cirbpa	100	72.826	ENSMZEG00005025577	-	100	74.457	Maylandia_zebra
ENSTNIG00000000450	cirbpa	100	68.852	ENSMALG00000020092	cirbpa	99	73.743	Monopterus_albus
ENSTNIG00000000450	cirbpa	100	72.826	ENSNBRG00000019658	cirbpa	100	74.457	Neolamprologus_brichardi
ENSTNIG00000000450	cirbpa	100	75.956	ENSONIG00000010169	cirbpa	100	73.770	Oreochromis_niloticus
ENSTNIG00000000450	cirbpa	100	75.824	ENSORLG00000015433	cirbpa	100	76.374	Oryzias_latipes
ENSTNIG00000000450	cirbpa	100	75.824	ENSORLG00020016909	cirbpa	100	76.374	Oryzias_latipes_hni
ENSTNIG00000000450	cirbpa	100	75.824	ENSORLG00015016636	cirbpa	100	76.374	Oryzias_latipes_hsok
ENSTNIG00000000450	cirbpa	100	80.110	ENSOMEG00000021469	cirbpa	73	79.558	Oryzias_melastigma
ENSTNIG00000000450	cirbpa	99	66.138	ENSPMGG00000017342	cirbpa	95	66.848	Periophthalmus_magnuspinnatus
ENSTNIG00000000450	cirbpa	100	75.936	ENSPFOG00000015653	cirbpa	100	75.956	Poecilia_formosa
ENSTNIG00000000450	cirbpa	99	76.216	ENSPLAG00000011125	cirbpa	100	76.216	Poecilia_latipinna
ENSTNIG00000000450	cirbpa	100	76.344	ENSPMEG00000013878	cirbpa	100	76.344	Poecilia_mexicana
ENSTNIG00000000450	cirbpa	99	77.049	ENSPREG00000018042	cirbpa	98	75.956	Poecilia_reticulata
ENSTNIG00000000450	cirbpa	100	72.826	ENSPNYG00000007198	-	100	74.457	Pundamilia_nyererei
ENSTNIG00000000450	cirbpa	100	58.537	ENSPNAG00000019997	cirbpb	100	58.706	Pygocentrus_nattereri
ENSTNIG00000000450	cirbpa	100	59.474	ENSSFOG00015005346	cirbpb	100	59.067	Scleropages_formosus
ENSTNIG00000000450	cirbpa	100	65.152	ENSSMAG00000002412	cirbpa	100	57.071	Scophthalmus_maximus
ENSTNIG00000000450	cirbpa	100	67.403	ENSSDUG00000016099	cirbpa	100	58.163	Seriola_dumerili
ENSTNIG00000000450	cirbpa	100	67.222	ENSSPAG00000023037	cirbpa	99	61.111	Stegastes_partitus
ENSTNIG00000000450	cirbpa	100	79.444	ENSTRUG00000010187	cirbpa	100	72.826	Takifugu_rubripes
ENSTNIG00000000450	cirbpa	99	76.503	ENSXCOG00000008262	cirbpa	92	91.781	Xiphophorus_couchianus
ENSTNIG00000000450	cirbpa	100	77.174	ENSXMAG00000019336	cirbpa	100	76.087	Xiphophorus_maculatus