EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000000626 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 2718 bases
Position: chrUn_random:26284148-26286865
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000003852	HVSL	PF09749.9	1.3e-54	1	2
ENSTNIP00000003852	HVSL	PF09749.9	1.3e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000000453	-	1138	-	ENSTNIP00000003852	247 (aa)	-	H3C6I2

Gene Model

Click here to download ENSTNIG00000000626's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000000626's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000000626	usb1	83	48.214	ENSG00000103005	USB1	100	48.598	Homo_sapiens
ENSTNIG00000000626	usb1	98	58.781	ENSAPOG00000011942	usb1	99	58.781	Acanthochromis_polyacanthus
ENSTNIG00000000626	usb1	98	46.970	ENSAMEG00000017205	USB1	98	48.106	Ailuropoda_melanoleuca
ENSTNIG00000000626	usb1	85	66.814	ENSACIG00000012234	usb1	99	61.852	Amphilophus_citrinellus
ENSTNIG00000000626	usb1	98	56.294	ENSAOCG00000014831	usb1	100	58.865	Amphiprion_ocellaris
ENSTNIG00000000626	usb1	98	55.594	ENSAPEG00000000296	usb1	100	58.156	Amphiprion_percula
ENSTNIG00000000626	usb1	84	68.304	ENSATEG00000009348	usb1	100	60.854	Anabas_testudineus
ENSTNIG00000000626	usb1	83	49.115	ENSAPLG00000002756	USB1	100	49.115	Anas_platyrhynchos
ENSTNIG00000000626	usb1	83	46.460	ENSACAG00000015481	USB1	99	46.460	Anolis_carolinensis
ENSTNIG00000000626	usb1	83	48.214	ENSANAG00000035640	USB1	98	45.660	Aotus_nancymaae
ENSTNIG00000000626	usb1	83	66.816	ENSACLG00000020586	usb1	99	58.571	Astatotilapia_calliptera
ENSTNIG00000000626	usb1	91	53.629	ENSAMXG00000040146	usb1	95	50.347	Astyanax_mexicanus
ENSTNIG00000000626	usb1	98	45.385	ENSBTAG00000015758	USB1	98	45.385	Bos_taurus
ENSTNIG00000000626	usb1	83	48.661	ENSCJAG00000011733	USB1	98	46.038	Callithrix_jacchus
ENSTNIG00000000626	usb1	97	43.820	ENSCAFG00000008556	USB1	71	44.569	Canis_familiaris
ENSTNIG00000000626	usb1	97	44.195	ENSCAFG00020009263	USB1	98	44.195	Canis_lupus_dingo
ENSTNIG00000000626	usb1	98	46.008	ENSCHIG00000024290	USB1	98	46.008	Capra_hircus
ENSTNIG00000000626	usb1	86	48.261	ENSTSYG00000006997	USB1	98	46.923	Carlito_syrichta
ENSTNIG00000000626	usb1	83	37.946	ENSCAPG00000009057	USB1	96	37.946	Cavia_aperea
ENSTNIG00000000626	usb1	98	45.247	ENSCPOG00000014325	USB1	98	45.247	Cavia_porcellus
ENSTNIG00000000626	usb1	83	48.214	ENSCCAG00000022132	USB1	98	45.660	Cebus_capucinus
ENSTNIG00000000626	usb1	83	48.661	ENSCATG00000032174	USB1	98	46.154	Cercocebus_atys
ENSTNIG00000000626	usb1	60	55.405	ENSCLAG00000007363	USB1	84	55.405	Chinchilla_lanigera
ENSTNIG00000000626	usb1	83	48.661	ENSCSAG00000004783	USB1	98	46.038	Chlorocebus_sabaeus
ENSTNIG00000000626	usb1	83	48.661	ENSCPBG00000026943	USB1	98	44.689	Chrysemys_picta_bellii
ENSTNIG00000000626	usb1	83	31.739	ENSCING00000011490	-	97	30.712	Ciona_intestinalis
ENSTNIG00000000626	usb1	83	48.661	ENSCANG00000037135	USB1	100	45.353	Colobus_angolensis_palliatus
ENSTNIG00000000626	usb1	98	46.388	ENSCGRG00001011243	USB1	98	46.388	Cricetulus_griseus_chok1gshd
ENSTNIG00000000626	usb1	98	46.388	ENSCGRG00000013252	USB1	98	46.388	Cricetulus_griseus_crigri
ENSTNIG00000000626	usb1	98	57.455	ENSCSEG00000013881	usb1	99	57.455	Cynoglossus_semilaevis
ENSTNIG00000000626	usb1	85	63.203	ENSCVAG00000009252	usb1	99	63.203	Cyprinodon_variegatus
ENSTNIG00000000626	usb1	92	52.033	ENSDARG00000003841	usb1	100	49.638	Danio_rerio
ENSTNIG00000000626	usb1	98	43.846	ENSDORG00000001888	Usb1	98	45.385	Dipodomys_ordii
ENSTNIG00000000626	usb1	90	35.484	FBgn0037713	CG16790	97	35.606	Drosophila_melanogaster
ENSTNIG00000000626	usb1	98	39.326	ENSETEG00000019682	USB1	98	39.326	Echinops_telfairi
ENSTNIG00000000626	usb1	83	45.701	ENSEBUG00000005889	usb1	78	45.701	Eptatretus_burgeri
ENSTNIG00000000626	usb1	98	47.510	ENSEASG00005005484	USB1	98	47.510	Equus_asinus_asinus
ENSTNIG00000000626	usb1	98	46.743	ENSECAG00000019493	USB1	90	46.743	Equus_caballus
ENSTNIG00000000626	usb1	60	50.000	ENSEEUG00000000154	USB1	56	50.000	Erinaceus_europaeus
ENSTNIG00000000626	usb1	83	59.556	ENSELUG00000010974	usb1	100	53.480	Esox_lucius
ENSTNIG00000000626	usb1	98	46.008	ENSFCAG00000002693	USB1	98	46.388	Felis_catus
ENSTNIG00000000626	usb1	99	45.421	ENSFALG00000006876	USB1	99	45.588	Ficedula_albicollis
ENSTNIG00000000626	usb1	98	45.627	ENSFDAG00000010052	USB1	98	45.627	Fukomys_damarensis
ENSTNIG00000000626	usb1	84	52.066	ENSFHEG00000012334	usb1	97	54.132	Fundulus_heteroclitus
ENSTNIG00000000626	usb1	83	61.712	ENSGMOG00000004228	usb1	99	61.712	Gadus_morhua
ENSTNIG00000000626	usb1	89	44.314	ENSGALG00000035604	USB1	100	46.212	Gallus_gallus
ENSTNIG00000000626	usb1	98	58.909	ENSGAFG00000021890	usb1	99	58.909	Gambusia_affinis
ENSTNIG00000000626	usb1	94	59.600	ENSGACG00000003257	usb1	100	58.781	Gasterosteus_aculeatus
ENSTNIG00000000626	usb1	98	45.149	ENSGAGG00000022572	USB1	98	45.149	Gopherus_agassizii
ENSTNIG00000000626	usb1	83	48.214	ENSGGOG00000017147	USB1	98	45.660	Gorilla_gorilla
ENSTNIG00000000626	usb1	83	65.919	ENSHBUG00000009823	usb1	99	57.348	Haplochromis_burtoni
ENSTNIG00000000626	usb1	98	45.802	ENSHGLG00000016078	USB1	96	45.802	Heterocephalus_glaber_female
ENSTNIG00000000626	usb1	98	45.802	ENSHGLG00100005562	USB1	96	45.802	Heterocephalus_glaber_male
ENSTNIG00000000626	usb1	81	61.290	ENSHCOG00000015633	usb1	99	59.302	Hippocampus_comes
ENSTNIG00000000626	usb1	98	49.135	ENSIPUG00000008601	usb1	100	49.135	Ictalurus_punctatus
ENSTNIG00000000626	usb1	84	47.788	ENSSTOG00000007548	USB1	98	47.015	Ictidomys_tridecemlineatus
ENSTNIG00000000626	usb1	98	49.049	ENSJJAG00000021859	Usb1	98	49.049	Jaculus_jaculus
ENSTNIG00000000626	usb1	83	65.919	ENSKMAG00000007200	usb1	99	57.500	Kryptolebias_marmoratus
ENSTNIG00000000626	usb1	90	58.264	ENSLBEG00000008452	usb1	84	56.274	Labrus_bergylta
ENSTNIG00000000626	usb1	71	51.795	ENSLACG00000000105	USB1	87	46.429	Latimeria_chalumnae
ENSTNIG00000000626	usb1	90	48.963	ENSLOCG00000000465	usb1	100	45.486	Lepisosteus_oculatus
ENSTNIG00000000626	usb1	98	41.791	ENSLAFG00000002267	USB1	98	41.791	Loxodonta_africana
ENSTNIG00000000626	usb1	83	48.661	ENSMFAG00000003926	USB1	98	46.154	Macaca_fascicularis
ENSTNIG00000000626	usb1	83	48.661	ENSMMUG00000022669	USB1	98	46.154	Macaca_mulatta
ENSTNIG00000000626	usb1	83	48.214	ENSMNEG00000042487	USB1	98	45.769	Macaca_nemestrina
ENSTNIG00000000626	usb1	83	48.661	ENSMLEG00000028756	USB1	98	46.154	Mandrillus_leucophaeus
ENSTNIG00000000626	usb1	98	57.706	ENSMAMG00000015092	usb1	100	58.065	Mastacembelus_armatus
ENSTNIG00000000626	usb1	83	66.816	ENSMZEG00005010008	usb1	99	58.065	Maylandia_zebra
ENSTNIG00000000626	usb1	98	45.420	ENSMAUG00000007832	Usb1	98	45.420	Mesocricetus_auratus
ENSTNIG00000000626	usb1	84	49.558	ENSMICG00000004900	USB1	98	47.308	Microcebus_murinus
ENSTNIG00000000626	usb1	98	46.947	ENSMOCG00000022647	Usb1	98	46.947	Microtus_ochrogaster
ENSTNIG00000000626	usb1	98	64.231	ENSMMOG00000000490	usb1	100	64.231	Mola_mola
ENSTNIG00000000626	usb1	81	48.848	ENSMODG00000014067	USB1	99	45.865	Monodelphis_domestica
ENSTNIG00000000626	usb1	94	62.000	ENSMALG00000005930	usb1	99	57.651	Monopterus_albus
ENSTNIG00000000626	usb1	99	47.170	MGP_CAROLIEiJ_G0031421	Usb1	99	47.170	Mus_caroli
ENSTNIG00000000626	usb1	99	46.792	ENSMUSG00000031792	Usb1	99	46.792	Mus_musculus
ENSTNIG00000000626	usb1	99	47.170	MGP_PahariEiJ_G0023019	Usb1	99	47.170	Mus_pahari
ENSTNIG00000000626	usb1	99	47.547	MGP_SPRETEiJ_G0032540	Usb1	99	47.547	Mus_spretus
ENSTNIG00000000626	usb1	98	46.212	ENSMPUG00000004684	USB1	94	46.591	Mustela_putorius_furo
ENSTNIG00000000626	usb1	84	49.558	ENSMLUG00000007400	USB1	98	49.558	Myotis_lucifugus
ENSTNIG00000000626	usb1	98	47.348	ENSNGAG00000009703	Usb1	98	47.925	Nannospalax_galili
ENSTNIG00000000626	usb1	98	55.212	ENSNBRG00000008747	usb1	99	61.972	Neolamprologus_brichardi
ENSTNIG00000000626	usb1	77	46.411	ENSNLEG00000003340	USB1	98	44.000	Nomascus_leucogenys
ENSTNIG00000000626	usb1	98	45.420	ENSODEG00000016214	USB1	98	45.420	Octodon_degus
ENSTNIG00000000626	usb1	98	57.914	ENSONIG00000011063	usb1	100	57.914	Oreochromis_niloticus
ENSTNIG00000000626	usb1	83	48.000	ENSOANG00000012118	USB1	94	48.000	Ornithorhynchus_anatinus
ENSTNIG00000000626	usb1	83	65.022	ENSORLG00000012479	usb1	99	59.041	Oryzias_latipes
ENSTNIG00000000626	usb1	83	63.677	ENSORLG00020018671	usb1	99	57.934	Oryzias_latipes_hni
ENSTNIG00000000626	usb1	83	65.022	ENSORLG00015009679	usb1	99	59.779	Oryzias_latipes_hsok
ENSTNIG00000000626	usb1	83	63.229	ENSOMEG00000012930	usb1	99	57.091	Oryzias_melastigma
ENSTNIG00000000626	usb1	84	46.903	ENSOGAG00000003273	USB1	98	44.528	Otolemur_garnettii
ENSTNIG00000000626	usb1	91	45.749	ENSOARG00000001107	USB1	95	45.749	Ovis_aries
ENSTNIG00000000626	usb1	83	47.768	ENSPPAG00000042137	USB1	98	45.283	Pan_paniscus
ENSTNIG00000000626	usb1	98	46.008	ENSPPRG00000024797	USB1	98	46.388	Panthera_pardus
ENSTNIG00000000626	usb1	98	46.388	ENSPTIG00000007506	USB1	98	46.768	Panthera_tigris_altaica
ENSTNIG00000000626	usb1	83	46.429	ENSPTRG00000008172	USB1	100	48.598	Pan_troglodytes
ENSTNIG00000000626	usb1	83	48.661	ENSPANG00000025138	USB1	98	46.154	Papio_anubis
ENSTNIG00000000626	usb1	83	56.502	ENSPKIG00000015109	usb1	99	47.651	Paramormyrops_kingsleyae
ENSTNIG00000000626	usb1	83	39.912	ENSPSIG00000004305	USB1	100	39.912	Pelodiscus_sinensis
ENSTNIG00000000626	usb1	85	59.031	ENSPMGG00000017725	usb1	99	56.154	Periophthalmus_magnuspinnatus
ENSTNIG00000000626	usb1	98	44.195	ENSPEMG00000016183	Usb1	98	45.693	Peromyscus_maniculatus_bairdii
ENSTNIG00000000626	usb1	85	46.725	ENSPMAG00000000462	usb1	97	46.725	Petromyzon_marinus
ENSTNIG00000000626	usb1	98	58.633	ENSPFOG00000011130	usb1	99	58.696	Poecilia_formosa
ENSTNIG00000000626	usb1	98	58.993	ENSPLAG00000009820	usb1	99	59.058	Poecilia_latipinna
ENSTNIG00000000626	usb1	98	58.993	ENSPMEG00000006402	usb1	99	59.058	Poecilia_mexicana
ENSTNIG00000000626	usb1	84	55.372	ENSPREG00000001047	usb1	98	57.025	Poecilia_reticulata
ENSTNIG00000000626	usb1	78	43.602	ENSPPYG00000007401	USB1	98	41.667	Pongo_abelii
ENSTNIG00000000626	usb1	98	46.768	ENSPCOG00000022612	USB1	98	47.148	Propithecus_coquereli
ENSTNIG00000000626	usb1	98	48.077	ENSPVAG00000004613	USB1	98	48.077	Pteropus_vampyrus
ENSTNIG00000000626	usb1	83	66.368	ENSPNYG00000022262	usb1	99	58.065	Pundamilia_nyererei
ENSTNIG00000000626	usb1	83	56.696	ENSPNAG00000011736	usb1	76	56.696	Pygocentrus_nattereri
ENSTNIG00000000626	usb1	98	46.947	ENSRNOG00000013216	Usb1	98	46.947	Rattus_norvegicus
ENSTNIG00000000626	usb1	83	46.429	ENSRBIG00000044466	USB1	100	49.065	Rhinopithecus_bieti
ENSTNIG00000000626	usb1	83	48.661	ENSRROG00000029211	USB1	98	46.038	Rhinopithecus_roxellana
ENSTNIG00000000626	usb1	83	48.661	ENSSBOG00000029362	USB1	98	46.415	Saimiri_boliviensis_boliviensis
ENSTNIG00000000626	usb1	81	46.330	ENSSHAG00000006993	USB1	89	47.321	Sarcophilus_harrisii
ENSTNIG00000000626	usb1	84	58.222	ENSSFOG00015023663	usb1	91	50.694	Scleropages_formosus
ENSTNIG00000000626	usb1	97	56.569	ENSSMAG00000015834	usb1	99	56.463	Scophthalmus_maximus
ENSTNIG00000000626	usb1	91	65.289	ENSSDUG00000002949	usb1	99	63.197	Seriola_dumerili
ENSTNIG00000000626	usb1	97	61.923	ENSSLDG00000014174	usb1	99	60.215	Seriola_lalandi_dorsalis
ENSTNIG00000000626	usb1	79	48.131	ENSSPUG00000006741	USB1	100	48.131	Sphenodon_punctatus
ENSTNIG00000000626	usb1	98	55.401	ENSSPAG00000007484	usb1	100	56.690	Stegastes_partitus
ENSTNIG00000000626	usb1	98	46.212	ENSSSCG00000002807	USB1	98	47.170	Sus_scrofa
ENSTNIG00000000626	usb1	79	49.057	ENSTGUG00000004792	USB1	99	44.487	Taeniopygia_guttata
ENSTNIG00000000626	usb1	98	65.428	ENSTRUG00000021069	usb1	100	65.428	Takifugu_rubripes
ENSTNIG00000000626	usb1	86	36.207	ENSTBEG00000001507	USB1	100	36.207	Tupaia_belangeri
ENSTNIG00000000626	usb1	98	46.970	ENSUAMG00000016823	USB1	98	48.106	Ursus_americanus
ENSTNIG00000000626	usb1	79	49.533	ENSUMAG00000021369	USB1	100	49.533	Ursus_maritimus
ENSTNIG00000000626	usb1	97	46.008	ENSVVUG00000023700	USB1	92	45.570	Vulpes_vulpes
ENSTNIG00000000626	usb1	97	44.788	ENSXETG00000013795	usb1	99	45.560	Xenopus_tropicalis
ENSTNIG00000000626	usb1	96	59.608	ENSXMAG00000024687	usb1	80	58.672	Xiphophorus_maculatus