EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000000856 (Gene tree)
Gene ID: -
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 3230 bases
Position: chr1:12991843-12995072
Accession: 29158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000000232	ResIII	PF04851.15	1.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000003466	-	1569	-	ENSTNIP00000000232	523 (aa)	-	H3BW70

Gene Model

Click here to download ENSTNIG00000000856's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000000856's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000000856	si:ch73-63e15.2	82	62.585	ENSTNIG00000013506	sbno1	55	62.585

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000000856	si:ch73-63e15.2	99	94.220	ENSAOCG00000016581	si:ch73-63e15.2	51	93.217	Amphiprion_ocellaris
ENSTNIG00000000856	si:ch73-63e15.2	99	93.436	ENSATEG00000023838	si:ch73-63e15.2	52	93.910	Anabas_testudineus
ENSTNIG00000000856	si:ch73-63e15.2	81	80.698	ENSACAG00000006370	-	96	80.698	Anolis_carolinensis
ENSTNIG00000000856	si:ch73-63e15.2	93	85.656	ENSAMXG00000018868	sbno2a	51	85.294	Astyanax_mexicanus
ENSTNIG00000000856	si:ch73-63e15.2	97	87.327	ENSIPUG00000019672	sbno2	50	87.475	Ictalurus_punctatus
ENSTNIG00000000856	si:ch73-63e15.2	93	87.824	ENSLBEG00000005937	-	81	86.441	Labrus_bergylta
ENSTNIG00000000856	si:ch73-63e15.2	93	95.287	ENSLBEG00000025016	si:ch73-63e15.2	53	93.969	Labrus_bergylta
ENSTNIG00000000856	si:ch73-63e15.2	98	77.519	ENSLACG00000012598	SBNO2	85	76.550	Latimeria_chalumnae
ENSTNIG00000000856	si:ch73-63e15.2	98	80.235	ENSMALG00000021831	si:ch73-63e15.2	51	80.235	Monopterus_albus
ENSTNIG00000000856	si:ch73-63e15.2	92	76.763	ENSMUSG00000035673	Sbno2	65	75.523	Mus_musculus
ENSTNIG00000000856	si:ch73-63e15.2	93	91.803	ENSNBRG00000022968	si:ch73-63e15.2	58	90.234	Neolamprologus_brichardi
ENSTNIG00000000856	si:ch73-63e15.2	99	77.842	ENSPSIG00000002852	SBNO2	53	76.879	Pelodiscus_sinensis
ENSTNIG00000000856	si:ch73-63e15.2	93	93.661	ENSPMEG00000002129	si:ch73-63e15.2	50	92.816	Poecilia_mexicana
ENSTNIG00000000856	si:ch73-63e15.2	97	85.771	ENSPNAG00000026609	sbno2a	52	85.941	Pygocentrus_nattereri
ENSTNIG00000000856	si:ch73-63e15.2	99	74.566	ENSUAMG00000006568	SBNO2	67	69.565	Ursus_americanus
ENSTNIG00000000856	si:ch73-63e15.2	99	91.923	ENSXCOG00000009209	si:ch73-63e15.2	53	91.923	Xiphophorus_couchianus