EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000002343 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 3293 bases
Position: chrUn_random:56619376-56622668
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000004837	zf-C2H2	PF00096.26	4.6e-49	1	5
ENSTNIP00000004837	zf-C2H2	PF00096.26	4.6e-49	2	5
ENSTNIP00000004837	zf-C2H2	PF00096.26	4.6e-49	3	5
ENSTNIP00000004837	zf-C2H2	PF00096.26	4.6e-49	4	5
ENSTNIP00000004837	zf-C2H2	PF00096.26	4.6e-49	5	5
ENSTNIP00000004837	zf-met	PF12874.7	1.6e-05	1	2
ENSTNIP00000004837	zf-met	PF12874.7	1.6e-05	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000004983	-	2274	-	ENSTNIP00000004837	482 (aa)	-	H3C9B5

Gene Model

Click here to download ENSTNIG00000002343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000002343's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000002343	-	88	39.903	ENSTNIG00000003979	-	99	39.848
ENSTNIG00000002343	-	77	43.011	ENSTNIG00000000934	-	100	43.689
ENSTNIG00000002343	-	83	41.333	ENSTNIG00000008200	-	100	41.333
ENSTNIG00000002343	-	84	39.344	ENSTNIG00000001164	ZNF628	99	39.344
ENSTNIG00000002343	-	87	36.070	ENSTNIG00000019069	-	100	36.070
ENSTNIG00000002343	-	91	35.644	ENSTNIG00000005798	zbtb16a	57	35.644
ENSTNIG00000002343	-	87	37.202	ENSTNIG00000011188	-	98	37.202
ENSTNIG00000002343	-	92	42.250	ENSTNIG00000008242	-	99	42.250
ENSTNIG00000002343	-	80	37.838	ENSTNIG00000012473	scrt2	50	37.838
ENSTNIG00000002343	-	81	32.105	ENSTNIG00000007805	zbtb41	50	32.105
ENSTNIG00000002343	-	85	39.645	ENSTNIG00000001921	-	60	39.645
ENSTNIG00000002343	-	82	38.614	ENSTNIG00000010902	zbtb17	56	38.614
ENSTNIG00000002343	-	85	44.689	ENSTNIG00000000330	-	100	44.689
ENSTNIG00000002343	-	81	30.000	ENSTNIG00000005051	znf341	58	30.000
ENSTNIG00000002343	-	86	46.703	ENSTNIG00000000277	-	93	46.703
ENSTNIG00000002343	-	79	39.130	ENSTNIG00000017000	-	100	39.130
ENSTNIG00000002343	-	86	39.899	ENSTNIG00000005479	-	99	39.899
ENSTNIG00000002343	-	86	32.970	ENSTNIG00000008100	-	100	35.068
ENSTNIG00000002343	-	83	34.628	ENSTNIG00000012449	zbtb48	52	34.628
ENSTNIG00000002343	-	96	35.952	ENSTNIG00000005023	-	100	35.952
ENSTNIG00000002343	-	86	40.625	ENSTNIG00000010722	GZF1	51	40.625
ENSTNIG00000002343	-	88	42.718	ENSTNIG00000005856	-	99	42.718
ENSTNIG00000002343	-	87	35.470	ENSTNIG00000008154	-	99	34.091
ENSTNIG00000002343	-	82	47.170	ENSTNIG00000012460	sall4	56	47.170
ENSTNIG00000002343	-	80	48.101	ENSTNIG00000000320	-	100	42.857
ENSTNIG00000002343	-	91	34.066	ENSTNIG00000005047	si:ch211-216l23.1	86	34.066
ENSTNIG00000002343	-	83	33.898	ENSTNIG00000003880	znf319b	86	33.898
ENSTNIG00000002343	-	85	37.302	ENSTNIG00000009831	-	98	37.302
ENSTNIG00000002343	-	87	32.740	ENSTNIG00000000073	znf646	97	32.740
ENSTNIG00000002343	-	80	48.718	ENSTNIG00000003479	-	100	48.718
ENSTNIG00000002343	-	90	33.974	ENSTNIG00000001159	si:dkey-89b17.4	99	33.974
ENSTNIG00000002343	-	83	36.842	ENSTNIG00000000528	-	96	36.842
ENSTNIG00000002343	-	83	33.028	ENSTNIG00000014443	prdm9	65	33.028
ENSTNIG00000002343	-	80	34.167	ENSTNIG00000003865	-	63	34.167
ENSTNIG00000002343	-	80	34.091	ENSTNIG00000018384	scrt1b	57	34.091
ENSTNIG00000002343	-	83	39.062	ENSTNIG00000002344	-	100	39.062
ENSTNIG00000002343	-	81	34.416	ENSTNIG00000011367	znf710b	52	34.416
ENSTNIG00000002343	-	87	41.370	ENSTNIG00000018984	-	98	41.370
ENSTNIG00000002343	-	84	39.130	ENSTNIG00000003834	gfi1b	66	39.130
ENSTNIG00000002343	-	81	30.857	ENSTNIG00000004148	-	50	30.857
ENSTNIG00000002343	-	81	37.681	ENSTNIG00000008504	snai2	54	37.681
ENSTNIG00000002343	-	83	37.143	ENSTNIG00000008194	prdm14	50	37.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000002343	-	83	44.474	ENSACAG00000026906	-	99	44.474	Anolis_carolinensis
ENSTNIG00000002343	-	85	40.789	ENSACAG00000026916	-	80	40.789	Anolis_carolinensis
ENSTNIG00000002343	-	91	44.765	ENSACAG00000027001	-	99	43.046	Anolis_carolinensis
ENSTNIG00000002343	-	83	49.398	ENSAMXG00000038122	-	95	49.398	Astyanax_mexicanus
ENSTNIG00000002343	-	96	37.452	ENSAMXG00000014745	-	82	41.627	Astyanax_mexicanus
ENSTNIG00000002343	-	81	37.168	ENSDARG00000096614	si:dkey-182i3.10	69	36.782	Danio_rerio
ENSTNIG00000002343	-	87	37.126	ENSELUG00000013806	-	66	38.830	Esox_lucius
ENSTNIG00000002343	-	98	39.362	ENSELUG00000018970	-	92	38.565	Esox_lucius
ENSTNIG00000002343	-	85	35.068	ENSELUG00000011838	-	65	35.068	Esox_lucius
ENSTNIG00000002343	-	84	45.357	ENSELUG00000021525	-	80	45.357	Esox_lucius
ENSTNIG00000002343	-	83	42.078	ENSELUG00000000485	-	90	42.078	Esox_lucius
ENSTNIG00000002343	-	81	71.838	ENSGACG00000001523	-	99	71.838	Gasterosteus_aculeatus
ENSTNIG00000002343	-	79	38.487	ENSHBUG00000016384	-	83	38.487	Haplochromis_burtoni
ENSTNIG00000002343	-	88	41.667	ENSHCOG00000017456	-	90	41.667	Hippocampus_comes
ENSTNIG00000002343	-	85	44.186	ENSHCOG00000001629	-	64	44.061	Hippocampus_comes
ENSTNIG00000002343	-	88	38.007	ENSLBEG00000013235	-	80	38.007	Labrus_bergylta
ENSTNIG00000002343	-	88	43.052	ENSPNAG00000009176	-	91	43.052	Pygocentrus_nattereri
ENSTNIG00000002343	-	90	41.730	ENSPNAG00000009184	-	83	46.445	Pygocentrus_nattereri
ENSTNIG00000002343	-	98	43.299	ENSSFOG00015020993	-	84	44.737	Scleropages_formosus
ENSTNIG00000002343	-	85	40.343	ENSXMAG00000020042	-	68	40.343	Xiphophorus_maculatus