EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000002589 (Gene tree)
Gene ID: -
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 3589 bases
Position: chrUn_random:53225763-53229351
Accession: ZDB-GENE-040426-818
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000005141	SRP54	PF00448.22	2e-77	1	1
ENSTNIP00000005141	SRP54_N	PF02881.19	3.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000005287	-	1619	-	ENSTNIP00000005141	504 (aa)	-	H3CA69

Gene Model

Click here to download ENSTNIG00000002589's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000002589's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000002589	srp54	100	94.643	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSTNIG00000002589	srp54	100	98.016	ENSAPOG00000011314	srp54	100	98.016	Acanthochromis_polyacanthus
ENSTNIG00000002589	srp54	100	94.643	ENSAMEG00000015544	SRP54	100	94.643	Ailuropoda_melanoleuca
ENSTNIG00000002589	srp54	89	97.550	ENSACIG00000022831	srp54	97	97.550	Amphilophus_citrinellus
ENSTNIG00000002589	srp54	100	98.016	ENSAOCG00000019401	srp54	100	98.016	Amphiprion_ocellaris
ENSTNIG00000002589	srp54	100	98.016	ENSAPEG00000001977	srp54	100	98.016	Amphiprion_percula
ENSTNIG00000002589	srp54	100	98.016	ENSATEG00000013877	srp54	100	98.016	Anabas_testudineus
ENSTNIG00000002589	srp54	94	94.304	ENSAPLG00000010125	SRP54	95	94.304	Anas_platyrhynchos
ENSTNIG00000002589	srp54	100	94.048	ENSACAG00000002103	-	100	94.048	Anolis_carolinensis
ENSTNIG00000002589	srp54	86	91.014	ENSACAG00000010631	-	100	91.014	Anolis_carolinensis
ENSTNIG00000002589	srp54	65	77.946	ENSACAG00000001124	-	100	77.946	Anolis_carolinensis
ENSTNIG00000002589	srp54	100	94.643	ENSANAG00000022133	SRP54	100	94.643	Aotus_nancymaae
ENSTNIG00000002589	srp54	100	98.214	ENSACLG00000015866	srp54	100	98.214	Astatotilapia_calliptera
ENSTNIG00000002589	srp54	100	97.024	ENSAMXG00000032669	SRP54	100	97.024	Astyanax_mexicanus
ENSTNIG00000002589	srp54	100	94.643	ENSBTAG00000019085	SRP54	100	94.643	Bos_taurus
ENSTNIG00000002589	srp54	98	72.490	WBGene00009012	F21D5.7	100	72.490	Caenorhabditis_elegans
ENSTNIG00000002589	srp54	100	94.643	ENSCJAG00000006581	SRP54	100	94.643	Callithrix_jacchus
ENSTNIG00000002589	srp54	100	94.643	ENSCAFG00000013331	SRP54	100	94.643	Canis_familiaris
ENSTNIG00000002589	srp54	100	94.643	ENSCAFG00020023427	SRP54	100	94.643	Canis_lupus_dingo
ENSTNIG00000002589	srp54	100	94.643	ENSCHIG00000026345	SRP54	100	94.643	Capra_hircus
ENSTNIG00000002589	srp54	100	94.444	ENSTSYG00000002680	-	100	94.444	Carlito_syrichta
ENSTNIG00000002589	srp54	94	83.368	ENSTSYG00000035333	-	93	83.368	Carlito_syrichta
ENSTNIG00000002589	srp54	94	61.020	ENSCAPG00000008780	SRP54	100	61.020	Cavia_aperea
ENSTNIG00000002589	srp54	100	94.246	ENSCPOG00000003691	SRP54	100	94.246	Cavia_porcellus
ENSTNIG00000002589	srp54	90	94.048	ENSCCAG00000024179	SRP54	100	94.272	Cebus_capucinus
ENSTNIG00000002589	srp54	100	94.643	ENSCATG00000034083	SRP54	100	94.643	Cercocebus_atys
ENSTNIG00000002589	srp54	100	94.643	ENSCLAG00000015076	SRP54	100	94.643	Chinchilla_lanigera
ENSTNIG00000002589	srp54	100	94.643	ENSCSAG00000015575	SRP54	100	94.643	Chlorocebus_sabaeus
ENSTNIG00000002589	srp54	95	84.200	ENSCHOG00000008986	SRP54	100	84.200	Choloepus_hoffmanni
ENSTNIG00000002589	srp54	100	94.643	ENSCPBG00000026195	SRP54	100	94.643	Chrysemys_picta_bellii
ENSTNIG00000002589	srp54	100	81.746	ENSCING00000007380	-	100	81.746	Ciona_intestinalis
ENSTNIG00000002589	srp54	100	94.643	ENSCANG00000028532	SRP54	100	94.643	Colobus_angolensis_palliatus
ENSTNIG00000002589	srp54	100	95.040	ENSCGRG00001009525	-	100	95.040	Cricetulus_griseus_chok1gshd
ENSTNIG00000002589	srp54	76	95.844	ENSCGRG00000009453	-	89	95.844	Cricetulus_griseus_crigri
ENSTNIG00000002589	srp54	100	97.222	ENSCSEG00000012392	srp54	100	97.222	Cynoglossus_semilaevis
ENSTNIG00000002589	srp54	100	97.619	ENSCVAG00000010395	srp54	100	97.619	Cyprinodon_variegatus
ENSTNIG00000002589	srp54	100	97.222	ENSDARG00000098367	srp54	100	97.222	Danio_rerio
ENSTNIG00000002589	srp54	100	94.643	ENSDNOG00000032525	SRP54	100	94.643	Dasypus_novemcinctus
ENSTNIG00000002589	srp54	89	80.088	ENSDORG00000005159	-	98	80.088	Dipodomys_ordii
ENSTNIG00000002589	srp54	96	78.969	FBgn0010747	Srp54k	99	78.244	Drosophila_melanogaster
ENSTNIG00000002589	srp54	100	93.849	ENSETEG00000016307	-	100	93.849	Echinops_telfairi
ENSTNIG00000002589	srp54	83	55.024	ENSETEG00000012102	-	99	55.024	Echinops_telfairi
ENSTNIG00000002589	srp54	100	87.698	ENSEBUG00000009437	-	100	87.698	Eptatretus_burgeri
ENSTNIG00000002589	srp54	100	94.643	ENSEASG00005002057	SRP54	100	94.643	Equus_asinus_asinus
ENSTNIG00000002589	srp54	99	94.578	ENSECAG00000018042	SRP54	98	94.578	Equus_caballus
ENSTNIG00000002589	srp54	100	78.968	ENSEEUG00000001511	SRP54	100	78.968	Erinaceus_europaeus
ENSTNIG00000002589	srp54	100	96.429	ENSELUG00000003395	srp54	100	96.429	Esox_lucius
ENSTNIG00000002589	srp54	100	94.841	ENSFCAG00000032033	SRP54	100	94.841	Felis_catus
ENSTNIG00000002589	srp54	100	94.246	ENSFALG00000005995	SRP54	100	94.246	Ficedula_albicollis
ENSTNIG00000002589	srp54	100	94.643	ENSFDAG00000016767	SRP54	100	94.643	Fukomys_damarensis
ENSTNIG00000002589	srp54	100	98.016	ENSFHEG00000004263	srp54	100	98.016	Fundulus_heteroclitus
ENSTNIG00000002589	srp54	95	91.004	ENSGMOG00000011391	srp54	100	91.004	Gadus_morhua
ENSTNIG00000002589	srp54	100	94.246	ENSGALG00000023135	SRP54	100	94.246	Gallus_gallus
ENSTNIG00000002589	srp54	100	97.817	ENSGAFG00000011586	srp54	100	97.817	Gambusia_affinis
ENSTNIG00000002589	srp54	100	97.619	ENSGACG00000004181	srp54	100	97.696	Gasterosteus_aculeatus
ENSTNIG00000002589	srp54	100	94.643	ENSGAGG00000014766	SRP54	100	94.643	Gopherus_agassizii
ENSTNIG00000002589	srp54	100	94.643	ENSGGOG00000002926	SRP54	100	94.643	Gorilla_gorilla
ENSTNIG00000002589	srp54	100	98.214	ENSHBUG00000005678	srp54	100	98.214	Haplochromis_burtoni
ENSTNIG00000002589	srp54	100	94.643	ENSHGLG00000002850	SRP54	100	94.643	Heterocephalus_glaber_female
ENSTNIG00000002589	srp54	100	94.643	ENSHGLG00100005263	SRP54	100	94.643	Heterocephalus_glaber_male
ENSTNIG00000002589	srp54	100	65.941	ENSHGLG00100007281	-	100	65.941	Heterocephalus_glaber_male
ENSTNIG00000002589	srp54	100	97.619	ENSHCOG00000021127	srp54	100	97.619	Hippocampus_comes
ENSTNIG00000002589	srp54	100	96.429	ENSIPUG00000001420	srp54	100	96.429	Ictalurus_punctatus
ENSTNIG00000002589	srp54	100	94.643	ENSSTOG00000016023	SRP54	100	94.643	Ictidomys_tridecemlineatus
ENSTNIG00000002589	srp54	100	90.278	ENSJJAG00000013417	-	100	90.278	Jaculus_jaculus
ENSTNIG00000002589	srp54	87	73.864	ENSJJAG00000016404	-	100	73.864	Jaculus_jaculus
ENSTNIG00000002589	srp54	100	97.222	ENSKMAG00000007707	srp54	100	97.222	Kryptolebias_marmoratus
ENSTNIG00000002589	srp54	100	98.214	ENSLBEG00000021122	srp54	100	98.214	Labrus_bergylta
ENSTNIG00000002589	srp54	100	98.214	ENSLBEG00000018690	srp54	100	98.214	Labrus_bergylta
ENSTNIG00000002589	srp54	100	94.643	ENSLACG00000017890	SRP54	100	94.643	Latimeria_chalumnae
ENSTNIG00000002589	srp54	100	96.429	ENSLOCG00000009440	srp54	100	96.429	Lepisosteus_oculatus
ENSTNIG00000002589	srp54	100	94.643	ENSLAFG00000012007	SRP54	100	94.643	Loxodonta_africana
ENSTNIG00000002589	srp54	100	94.643	ENSMFAG00000044371	SRP54	100	94.643	Macaca_fascicularis
ENSTNIG00000002589	srp54	100	94.643	ENSMMUG00000015073	FAM177A1	100	94.643	Macaca_mulatta
ENSTNIG00000002589	srp54	100	94.643	ENSMNEG00000006947	SRP54	100	94.643	Macaca_nemestrina
ENSTNIG00000002589	srp54	100	94.643	ENSMLEG00000042251	SRP54	100	94.643	Mandrillus_leucophaeus
ENSTNIG00000002589	srp54	100	98.214	ENSMAMG00000004803	srp54	100	98.214	Mastacembelus_armatus
ENSTNIG00000002589	srp54	100	98.214	ENSMZEG00005027528	srp54	100	98.214	Maylandia_zebra
ENSTNIG00000002589	srp54	100	89.921	ENSMGAG00000012481	SRP54	100	89.921	Meleagris_gallopavo
ENSTNIG00000002589	srp54	100	94.841	ENSMAUG00000014447	-	100	94.841	Mesocricetus_auratus
ENSTNIG00000002589	srp54	100	94.643	ENSMICG00000010270	SRP54	100	94.643	Microcebus_murinus
ENSTNIG00000002589	srp54	87	94.545	ENSMOCG00000000948	-	100	94.545	Microtus_ochrogaster
ENSTNIG00000002589	srp54	90	95.595	ENSMMOG00000020303	srp54	99	95.595	Mola_mola
ENSTNIG00000002589	srp54	100	94.643	ENSMODG00000012925	-	100	94.643	Monodelphis_domestica
ENSTNIG00000002589	srp54	100	94.643	ENSMODG00000023150	-	100	94.643	Monodelphis_domestica
ENSTNIG00000002589	srp54	89	97.098	ENSMALG00000009163	srp54	99	97.098	Monopterus_albus
ENSTNIG00000002589	srp54	100	94.841	MGP_CAROLIEiJ_G0017754	-	100	94.841	Mus_caroli
ENSTNIG00000002589	srp54	100	94.841	ENSMUSG00000112449	Srp54b	100	94.841	Mus_musculus
ENSTNIG00000002589	srp54	100	94.048	ENSMUSG00000079108	Srp54c	100	94.048	Mus_musculus
ENSTNIG00000002589	srp54	100	94.841	ENSMUSG00000073079	Srp54a	100	96.364	Mus_musculus
ENSTNIG00000002589	srp54	100	94.841	MGP_PahariEiJ_G0029510	-	100	94.841	Mus_pahari
ENSTNIG00000002589	srp54	100	94.643	ENSMPUG00000016302	SRP54	100	94.643	Mustela_putorius_furo
ENSTNIG00000002589	srp54	100	94.048	ENSMLUG00000008958	SRP54	100	94.048	Myotis_lucifugus
ENSTNIG00000002589	srp54	100	85.714	ENSNGAG00000019806	-	100	85.714	Nannospalax_galili
ENSTNIG00000002589	srp54	87	98.182	ENSNBRG00000006000	srp54	100	98.182	Neolamprologus_brichardi
ENSTNIG00000002589	srp54	100	94.643	ENSNLEG00000003496	SRP54	100	94.643	Nomascus_leucogenys
ENSTNIG00000002589	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSTNIG00000002589	srp54	58	93.443	ENSOPRG00000014502	-	60	93.443	Ochotona_princeps
ENSTNIG00000002589	srp54	100	94.643	ENSODEG00000004865	SRP54	100	94.643	Octodon_degus
ENSTNIG00000002589	srp54	100	98.214	ENSONIG00000011768	srp54	100	98.214	Oreochromis_niloticus
ENSTNIG00000002589	srp54	100	94.643	ENSOANG00000014051	SRP54	100	94.643	Ornithorhynchus_anatinus
ENSTNIG00000002589	srp54	100	94.048	ENSOCUG00000007838	SRP54	100	94.048	Oryctolagus_cuniculus
ENSTNIG00000002589	srp54	100	98.413	ENSORLG00000010027	srp54	100	98.413	Oryzias_latipes
ENSTNIG00000002589	srp54	100	98.413	ENSORLG00020001878	srp54	100	98.413	Oryzias_latipes_hni
ENSTNIG00000002589	srp54	100	98.413	ENSORLG00015021866	srp54	100	98.413	Oryzias_latipes_hsok
ENSTNIG00000002589	srp54	100	98.611	ENSOMEG00000020952	srp54	100	98.611	Oryzias_melastigma
ENSTNIG00000002589	srp54	100	94.643	ENSOGAG00000012188	SRP54	100	94.643	Otolemur_garnettii
ENSTNIG00000002589	srp54	100	94.643	ENSOARG00000007160	SRP54	100	94.643	Ovis_aries
ENSTNIG00000002589	srp54	100	94.643	ENSPPAG00000017434	SRP54	100	94.643	Pan_paniscus
ENSTNIG00000002589	srp54	100	94.048	ENSPPRG00000014047	SRP54	100	94.048	Panthera_pardus
ENSTNIG00000002589	srp54	100	94.841	ENSPTIG00000000744	SRP54	96	94.841	Panthera_tigris_altaica
ENSTNIG00000002589	srp54	100	94.643	ENSPTRG00000006259	FAM177A1	100	94.643	Pan_troglodytes
ENSTNIG00000002589	srp54	100	94.643	ENSPANG00000023853	SRP54	100	94.643	Papio_anubis
ENSTNIG00000002589	srp54	100	96.627	ENSPKIG00000001953	srp54	100	96.627	Paramormyrops_kingsleyae
ENSTNIG00000002589	srp54	100	94.444	ENSPSIG00000006476	SRP54	100	94.444	Pelodiscus_sinensis
ENSTNIG00000002589	srp54	91	94.783	ENSPMGG00000004127	srp54	99	94.783	Periophthalmus_magnuspinnatus
ENSTNIG00000002589	srp54	100	82.411	ENSPEMG00000019634	-	100	82.411	Peromyscus_maniculatus_bairdii
ENSTNIG00000002589	srp54	100	89.286	ENSPMAG00000006078	-	100	89.286	Petromyzon_marinus
ENSTNIG00000002589	srp54	100	94.643	ENSPCIG00000016175	SRP54	100	94.643	Phascolarctos_cinereus
ENSTNIG00000002589	srp54	100	97.817	ENSPFOG00000008870	srp54	100	97.817	Poecilia_formosa
ENSTNIG00000002589	srp54	100	97.817	ENSPLAG00000009889	srp54	100	97.817	Poecilia_latipinna
ENSTNIG00000002589	srp54	100	97.817	ENSPMEG00000008601	srp54	100	97.817	Poecilia_mexicana
ENSTNIG00000002589	srp54	100	97.817	ENSPREG00000004505	srp54	100	97.817	Poecilia_reticulata
ENSTNIG00000002589	srp54	100	89.881	ENSPPYG00000005739	SRP54	100	89.881	Pongo_abelii
ENSTNIG00000002589	srp54	100	91.270	ENSPCAG00000006268	SRP54	100	91.270	Procavia_capensis
ENSTNIG00000002589	srp54	100	92.673	ENSPCOG00000022473	SRP54	100	92.673	Propithecus_coquereli
ENSTNIG00000002589	srp54	63	96.809	ENSPVAG00000010056	SRP54	82	96.809	Pteropus_vampyrus
ENSTNIG00000002589	srp54	100	98.214	ENSPNYG00000009717	srp54	100	98.214	Pundamilia_nyererei
ENSTNIG00000002589	srp54	100	96.825	ENSPNAG00000008544	srp54	100	96.825	Pygocentrus_nattereri
ENSTNIG00000002589	srp54	100	94.643	ENSRNOG00000032776	Srp54a	100	94.643	Rattus_norvegicus
ENSTNIG00000002589	srp54	100	94.643	ENSRROG00000041292	SRP54	100	94.643	Rhinopithecus_roxellana
ENSTNIG00000002589	srp54	86	51.247	YPR088C	SRP54	96	46.780	Saccharomyces_cerevisiae
ENSTNIG00000002589	srp54	94	94.304	ENSSBOG00000035145	SRP54	100	94.304	Saimiri_boliviensis_boliviensis
ENSTNIG00000002589	srp54	68	93.294	ENSSHAG00000000671	SRP54	100	93.294	Sarcophilus_harrisii
ENSTNIG00000002589	srp54	100	96.825	ENSSFOG00015013920	srp54	100	96.825	Scleropages_formosus
ENSTNIG00000002589	srp54	100	92.322	ENSSMAG00000002441	srp54	100	92.322	Scophthalmus_maximus
ENSTNIG00000002589	srp54	100	98.016	ENSSDUG00000018586	srp54	100	98.016	Seriola_dumerili
ENSTNIG00000002589	srp54	100	98.016	ENSSLDG00000010476	srp54	100	98.016	Seriola_lalandi_dorsalis
ENSTNIG00000002589	srp54	100	94.643	ENSSARG00000002744	SRP54	100	94.643	Sorex_araneus
ENSTNIG00000002589	srp54	100	94.643	ENSSPUG00000013101	SRP54	100	94.643	Sphenodon_punctatus
ENSTNIG00000002589	srp54	100	98.016	ENSSPAG00000002354	srp54	100	98.016	Stegastes_partitus
ENSTNIG00000002589	srp54	100	94.643	ENSSSCG00000001955	SRP54	100	94.643	Sus_scrofa
ENSTNIG00000002589	srp54	94	94.304	ENSTGUG00000011945	-	95	94.304	Taeniopygia_guttata
ENSTNIG00000002589	srp54	100	99.008	ENSTRUG00000007057	srp54	100	99.008	Takifugu_rubripes
ENSTNIG00000002589	srp54	89	85.682	ENSTBEG00000011409	SRP54	100	85.682	Tupaia_belangeri
ENSTNIG00000002589	srp54	100	85.714	ENSTTRG00000000928	SRP54	100	85.714	Tursiops_truncatus
ENSTNIG00000002589	srp54	52	95.802	ENSUAMG00000012385	SRP54	100	95.802	Ursus_americanus
ENSTNIG00000002589	srp54	100	94.643	ENSUMAG00000011234	SRP54	100	94.643	Ursus_maritimus
ENSTNIG00000002589	srp54	94	94.515	ENSVPAG00000005668	SRP54	100	94.515	Vicugna_pacos
ENSTNIG00000002589	srp54	100	94.643	ENSVVUG00000019962	SRP54	100	94.643	Vulpes_vulpes
ENSTNIG00000002589	srp54	100	80.276	ENSXETG00000012290	srp54	100	80.276	Xenopus_tropicalis
ENSTNIG00000002589	srp54	88	97.968	ENSXCOG00000004658	srp54	96	97.968	Xiphophorus_couchianus
ENSTNIG00000002589	srp54	100	97.817	ENSXMAG00000018315	srp54	100	97.817	Xiphophorus_maculatus