EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000002880 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 1951 bases
Position: chr2:10784129-10786079
Accession: ZDB-GENE-041010-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000005446	CMS1	PF14617.6	1.8e-27	1	1
ENSTNIP00000005446	DEAD	PF00270.29	5.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000005592	-	1016	-	ENSTNIP00000005446	276 (aa)	-	H3CB24

Gene Model

Click here to download ENSTNIG00000002880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000002880's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000002880	cmss1	88	50.617	ENSG00000184220	CMSS1	98	65.000	Homo_sapiens
ENSTNIG00000002880	cmss1	74	76.355	ENSAPOG00000010604	cmss1	82	76.355	Acanthochromis_polyacanthus
ENSTNIG00000002880	cmss1	95	47.909	ENSAMEG00000004092	CMSS1	78	55.172	Ailuropoda_melanoleuca
ENSTNIG00000002880	cmss1	74	63.547	ENSACIG00000021854	cmss1	75	63.547	Amphilophus_citrinellus
ENSTNIG00000002880	cmss1	74	75.369	ENSAOCG00000013361	cmss1	93	67.164	Amphiprion_ocellaris
ENSTNIG00000002880	cmss1	74	75.369	ENSAPEG00000005829	cmss1	70	75.369	Amphiprion_percula
ENSTNIG00000002880	cmss1	83	69.298	ENSATEG00000008209	cmss1	94	64.576	Anabas_testudineus
ENSTNIG00000002880	cmss1	73	57.426	ENSAPLG00000010542	CMSS1	88	57.426	Anas_platyrhynchos
ENSTNIG00000002880	cmss1	99	50.179	ENSACAG00000011065	CMSS1	74	56.931	Anolis_carolinensis
ENSTNIG00000002880	cmss1	87	49.372	ENSANAG00000023565	CMSS1	77	54.455	Aotus_nancymaae
ENSTNIG00000002880	cmss1	89	63.258	ENSACLG00000027294	cmss1	70	72.906	Astatotilapia_calliptera
ENSTNIG00000002880	cmss1	72	63.000	ENSAMXG00000002046	cmss1	69	63.547	Astyanax_mexicanus
ENSTNIG00000002880	cmss1	73	53.960	ENSBTAG00000013663	CMSS1	73	53.960	Bos_taurus
ENSTNIG00000002880	cmss1	86	50.840	ENSCJAG00000000610	CMSS1	77	55.941	Callithrix_jacchus
ENSTNIG00000002880	cmss1	73	55.446	ENSCAFG00000009230	CMSS1	73	55.446	Canis_familiaris
ENSTNIG00000002880	cmss1	73	54.455	ENSCAFG00020024156	-	63	54.455	Canis_lupus_dingo
ENSTNIG00000002880	cmss1	73	55.446	ENSCAFG00020009464	-	74	55.446	Canis_lupus_dingo
ENSTNIG00000002880	cmss1	73	53.960	ENSCHIG00000013003	CMSS1	73	53.960	Capra_hircus
ENSTNIG00000002880	cmss1	86	52.321	ENSTSYG00000009266	CMSS1	78	56.436	Carlito_syrichta
ENSTNIG00000002880	cmss1	76	46.411	ENSCAPG00000013584	CMSS1	88	49.735	Cavia_aperea
ENSTNIG00000002880	cmss1	72	56.500	ENSCPOG00000014680	CMSS1	72	56.931	Cavia_porcellus
ENSTNIG00000002880	cmss1	86	51.681	ENSCCAG00000034685	CMSS1	77	56.436	Cebus_capucinus
ENSTNIG00000002880	cmss1	73	56.436	ENSCATG00000031980	CMSS1	77	56.436	Cercocebus_atys
ENSTNIG00000002880	cmss1	72	55.000	ENSCLAG00000011241	CMSS1	87	55.446	Chinchilla_lanigera
ENSTNIG00000002880	cmss1	73	56.436	ENSCSAG00000006024	CMSS1	82	56.436	Chlorocebus_sabaeus
ENSTNIG00000002880	cmss1	72	39.500	ENSCHOG00000012098	CMSS1	73	40.099	Choloepus_hoffmanni
ENSTNIG00000002880	cmss1	72	35.644	ENSCING00000014848	-	99	35.829	Ciona_intestinalis
ENSTNIG00000002880	cmss1	73	56.436	ENSCANG00000031337	CMSS1	77	56.436	Colobus_angolensis_palliatus
ENSTNIG00000002880	cmss1	73	54.455	ENSCGRG00001014305	Cmss1	73	54.455	Cricetulus_griseus_chok1gshd
ENSTNIG00000002880	cmss1	73	54.455	ENSCGRG00000006722	Cmss1	79	54.455	Cricetulus_griseus_crigri
ENSTNIG00000002880	cmss1	74	67.488	ENSCSEG00000004958	cmss1	69	67.488	Cynoglossus_semilaevis
ENSTNIG00000002880	cmss1	82	71.930	ENSCVAG00000005039	cmss1	70	74.877	Cyprinodon_variegatus
ENSTNIG00000002880	cmss1	94	58.779	ENSDARG00000112579	cmss1	96	57.092	Danio_rerio
ENSTNIG00000002880	cmss1	87	50.417	ENSDNOG00000040418	CMSS1	73	54.950	Dasypus_novemcinctus
ENSTNIG00000002880	cmss1	72	55.500	ENSDORG00000010461	Cmss1	72	55.941	Dipodomys_ordii
ENSTNIG00000002880	cmss1	72	54.500	ENSEASG00005010966	CMSS1	92	54.950	Equus_asinus_asinus
ENSTNIG00000002880	cmss1	72	54.000	ENSECAG00000015662	CMSS1	89	54.455	Equus_caballus
ENSTNIG00000002880	cmss1	72	37.000	ENSEEUG00000007624	-	73	37.624	Erinaceus_europaeus
ENSTNIG00000002880	cmss1	92	58.103	ENSELUG00000019459	cmss1	68	63.054	Esox_lucius
ENSTNIG00000002880	cmss1	72	56.000	ENSFCAG00000044577	CMSS1	72	56.436	Felis_catus
ENSTNIG00000002880	cmss1	73	57.426	ENSFALG00000005816	CMSS1	85	57.426	Ficedula_albicollis
ENSTNIG00000002880	cmss1	73	55.446	ENSFDAG00000012577	CMSS1	89	55.446	Fukomys_damarensis
ENSTNIG00000002880	cmss1	83	67.965	ENSFHEG00000012008	cmss1	84	70.936	Fundulus_heteroclitus
ENSTNIG00000002880	cmss1	74	68.473	ENSGMOG00000016729	cmss1	73	68.473	Gadus_morhua
ENSTNIG00000002880	cmss1	97	51.282	ENSGALG00000015267	CMSS1	77	58.416	Gallus_gallus
ENSTNIG00000002880	cmss1	75	71.498	ENSGAFG00000021217	cmss1	77	71.429	Gambusia_affinis
ENSTNIG00000002880	cmss1	74	66.995	ENSGACG00000002798	cmss1	73	66.995	Gasterosteus_aculeatus
ENSTNIG00000002880	cmss1	100	51.601	ENSGAGG00000019861	CMSS1	100	51.246	Gopherus_agassizii
ENSTNIG00000002880	cmss1	88	51.029	ENSGGOG00000014125	CMSS1	77	55.941	Gorilla_gorilla
ENSTNIG00000002880	cmss1	89	63.498	ENSHBUG00000008431	cmss1	72	72.414	Haplochromis_burtoni
ENSTNIG00000002880	cmss1	72	56.000	ENSHGLG00000019481	CMSS1	82	56.436	Heterocephalus_glaber_female
ENSTNIG00000002880	cmss1	72	56.000	ENSHGLG00100010314	CMSS1	81	56.436	Heterocephalus_glaber_male
ENSTNIG00000002880	cmss1	92	61.089	ENSHCOG00000003222	cmss1	69	68.966	Hippocampus_comes
ENSTNIG00000002880	cmss1	99	55.714	ENSIPUG00000011591	cmss1	70	66.010	Ictalurus_punctatus
ENSTNIG00000002880	cmss1	73	54.455	ENSSTOG00000019366	CMSS1	73	54.455	Ictidomys_tridecemlineatus
ENSTNIG00000002880	cmss1	95	47.426	ENSJJAG00000014894	Cmss1	90	55.446	Jaculus_jaculus
ENSTNIG00000002880	cmss1	74	63.547	ENSKMAG00000002390	cmss1	82	63.547	Kryptolebias_marmoratus
ENSTNIG00000002880	cmss1	74	69.118	ENSLBEG00000006298	cmss1	83	69.118	Labrus_bergylta
ENSTNIG00000002880	cmss1	73	59.901	ENSLACG00000009293	CMSS1	88	59.901	Latimeria_chalumnae
ENSTNIG00000002880	cmss1	73	51.485	ENSLOCG00000009391	cmss1	71	51.485	Lepisosteus_oculatus
ENSTNIG00000002880	cmss1	72	56.500	ENSLAFG00000017509	CMSS1	89	56.931	Loxodonta_africana
ENSTNIG00000002880	cmss1	73	55.941	ENSMFAG00000045006	CMSS1	77	55.941	Macaca_fascicularis
ENSTNIG00000002880	cmss1	73	55.446	ENSMMUG00000002939	CMSS1	85	56.250	Macaca_mulatta
ENSTNIG00000002880	cmss1	73	55.941	ENSMNEG00000031315	CMSS1	77	55.941	Macaca_nemestrina
ENSTNIG00000002880	cmss1	73	55.941	ENSMLEG00000033660	CMSS1	77	55.941	Mandrillus_leucophaeus
ENSTNIG00000002880	cmss1	97	65.056	ENSMAMG00000017176	cmss1	70	73.892	Mastacembelus_armatus
ENSTNIG00000002880	cmss1	89	63.258	ENSMZEG00005021886	cmss1	70	72.906	Maylandia_zebra
ENSTNIG00000002880	cmss1	73	58.416	ENSMGAG00000014360	CMSS1	89	58.416	Meleagris_gallopavo
ENSTNIG00000002880	cmss1	72	55.500	ENSMICG00000048977	CMSS1	78	55.941	Microcebus_murinus
ENSTNIG00000002880	cmss1	73	55.446	ENSMOCG00000021937	Cmss1	73	55.446	Microtus_ochrogaster
ENSTNIG00000002880	cmss1	74	72.414	ENSMMOG00000019794	cmss1	84	72.414	Mola_mola
ENSTNIG00000002880	cmss1	73	57.921	ENSMODG00000002275	CMSS1	76	57.921	Monodelphis_domestica
ENSTNIG00000002880	cmss1	99	65.505	ENSMALG00000004250	cmss1	95	68.478	Monopterus_albus
ENSTNIG00000002880	cmss1	73	56.436	MGP_CAROLIEiJ_G0020824	Cmss1	73	56.436	Mus_caroli
ENSTNIG00000002880	cmss1	73	56.436	ENSMUSG00000022748	Cmss1	73	56.436	Mus_musculus
ENSTNIG00000002880	cmss1	73	56.931	MGP_PahariEiJ_G0016524	Cmss1	73	56.931	Mus_pahari
ENSTNIG00000002880	cmss1	73	56.436	MGP_SPRETEiJ_G0021724	Cmss1	73	56.436	Mus_spretus
ENSTNIG00000002880	cmss1	72	55.779	ENSMPUG00000011324	CMSS1	78	56.219	Mustela_putorius_furo
ENSTNIG00000002880	cmss1	72	55.446	ENSMLUG00000001131	CMSS1	78	55.882	Myotis_lucifugus
ENSTNIG00000002880	cmss1	73	55.446	ENSNGAG00000020316	Cmss1	72	55.446	Nannospalax_galili
ENSTNIG00000002880	cmss1	89	63.258	ENSNBRG00000003095	cmss1	70	72.906	Neolamprologus_brichardi
ENSTNIG00000002880	cmss1	88	51.440	ENSNLEG00000034172	CMSS1	77	56.436	Nomascus_leucogenys
ENSTNIG00000002880	cmss1	83	50.000	ENSMEUG00000014505	CMSS1	89	52.970	Notamacropus_eugenii
ENSTNIG00000002880	cmss1	73	55.446	ENSOPRG00000002986	CMSS1	73	55.446	Ochotona_princeps
ENSTNIG00000002880	cmss1	86	51.261	ENSODEG00000005226	-	72	55.941	Octodon_degus
ENSTNIG00000002880	cmss1	73	52.475	ENSODEG00000003558	-	75	52.475	Octodon_degus
ENSTNIG00000002880	cmss1	99	40.146	ENSODEG00000001853	-	71	47.030	Octodon_degus
ENSTNIG00000002880	cmss1	95	41.603	ENSODEG00000009446	-	78	47.030	Octodon_degus
ENSTNIG00000002880	cmss1	74	71.921	ENSONIG00000006678	cmss1	78	71.921	Oreochromis_niloticus
ENSTNIG00000002880	cmss1	86	53.782	ENSOANG00000007529	CMSS1	87	57.921	Ornithorhynchus_anatinus
ENSTNIG00000002880	cmss1	73	54.950	ENSOCUG00000025366	CMSS1	73	54.950	Oryctolagus_cuniculus
ENSTNIG00000002880	cmss1	94	63.462	ENSORLG00000020340	cmss1	95	62.182	Oryzias_latipes
ENSTNIG00000002880	cmss1	76	62.085	ENSORLG00020012235	cmss1	86	62.562	Oryzias_latipes_hni
ENSTNIG00000002880	cmss1	95	54.647	ENSORLG00015015551	cmss1	76	63.547	Oryzias_latipes_hsok
ENSTNIG00000002880	cmss1	74	72.414	ENSOMEG00000012555	cmss1	95	63.043	Oryzias_melastigma
ENSTNIG00000002880	cmss1	73	55.941	ENSOGAG00000002045	CMSS1	89	55.941	Otolemur_garnettii
ENSTNIG00000002880	cmss1	73	53.695	ENSOARG00000017899	CMSS1	70	53.695	Ovis_aries
ENSTNIG00000002880	cmss1	88	51.029	ENSPPAG00000038515	CMSS1	74	55.941	Pan_paniscus
ENSTNIG00000002880	cmss1	86	51.477	ENSPPRG00000016767	CMSS1	72	56.436	Panthera_pardus
ENSTNIG00000002880	cmss1	86	51.899	ENSPTIG00000018274	CMSS1	72	56.436	Panthera_tigris_altaica
ENSTNIG00000002880	cmss1	88	51.029	ENSPTRG00000015157	CMSS1	82	55.941	Pan_troglodytes
ENSTNIG00000002880	cmss1	73	56.436	ENSPANG00000019980	CMSS1	80	56.436	Papio_anubis
ENSTNIG00000002880	cmss1	97	54.982	ENSPKIG00000012609	cmss1	75	63.547	Paramormyrops_kingsleyae
ENSTNIG00000002880	cmss1	83	57.018	ENSPSIG00000003849	CMSS1	88	59.406	Pelodiscus_sinensis
ENSTNIG00000002880	cmss1	81	66.667	ENSPMGG00000010286	cmss1	88	71.078	Periophthalmus_magnuspinnatus
ENSTNIG00000002880	cmss1	99	49.097	ENSPEMG00000016384	Cmss1	72	56.436	Peromyscus_maniculatus_bairdii
ENSTNIG00000002880	cmss1	74	44.608	ENSPMAG00000001146	cmss1	99	44.828	Petromyzon_marinus
ENSTNIG00000002880	cmss1	96	50.373	ENSPCIG00000015656	CMSS1	77	58.416	Phascolarctos_cinereus
ENSTNIG00000002880	cmss1	83	67.686	ENSPFOG00000016849	cmss1	71	70.936	Poecilia_formosa
ENSTNIG00000002880	cmss1	83	67.249	ENSPLAG00000008323	cmss1	71	70.443	Poecilia_latipinna
ENSTNIG00000002880	cmss1	83	68.122	ENSPMEG00000021020	cmss1	70	71.429	Poecilia_mexicana
ENSTNIG00000002880	cmss1	94	63.636	ENSPREG00000007618	cmss1	69	69.951	Poecilia_reticulata
ENSTNIG00000002880	cmss1	88	51.440	ENSPPYG00000013606	CMSS1	74	56.436	Pongo_abelii
ENSTNIG00000002880	cmss1	95	46.494	ENSPCOG00000020035	CMSS1	78	55.446	Propithecus_coquereli
ENSTNIG00000002880	cmss1	72	50.000	ENSPVAG00000017031	CMSS1	72	50.495	Pteropus_vampyrus
ENSTNIG00000002880	cmss1	80	63.866	ENSPNYG00000013428	cmss1	65	75.141	Pundamilia_nyererei
ENSTNIG00000002880	cmss1	95	57.736	ENSPNAG00000007912	cmss1	69	62.562	Pygocentrus_nattereri
ENSTNIG00000002880	cmss1	85	52.340	ENSRNOG00000027888	Cmss1	79	56.436	Rattus_norvegicus
ENSTNIG00000002880	cmss1	73	55.941	ENSRBIG00000037931	CMSS1	77	55.941	Rhinopithecus_bieti
ENSTNIG00000002880	cmss1	73	55.941	ENSRROG00000042910	CMSS1	77	55.941	Rhinopithecus_roxellana
ENSTNIG00000002880	cmss1	87	50.628	ENSSBOG00000030980	CMSS1	77	55.446	Saimiri_boliviensis_boliviensis
ENSTNIG00000002880	cmss1	73	59.406	ENSSHAG00000009321	CMSS1	80	59.406	Sarcophilus_harrisii
ENSTNIG00000002880	cmss1	89	61.134	ENSSFOG00015001509	cmss1	95	57.762	Scleropages_formosus
ENSTNIG00000002880	cmss1	92	65.504	ENSSMAG00000001653	cmss1	93	61.255	Scophthalmus_maximus
ENSTNIG00000002880	cmss1	94	70.229	ENSSDUG00000007719	cmss1	94	69.259	Seriola_dumerili
ENSTNIG00000002880	cmss1	94	64.444	ENSSLDG00000012300	cmss1	92	71.493	Seriola_lalandi_dorsalis
ENSTNIG00000002880	cmss1	73	49.010	ENSSARG00000003584	CMSS1	72	49.010	Sorex_araneus
ENSTNIG00000002880	cmss1	83	52.632	ENSSPUG00000003865	CMSS1	89	54.950	Sphenodon_punctatus
ENSTNIG00000002880	cmss1	75	76.214	ENSSPAG00000019182	cmss1	63	75.862	Stegastes_partitus
ENSTNIG00000002880	cmss1	72	55.000	ENSSSCG00000011970	CMSS1	72	55.446	Sus_scrofa
ENSTNIG00000002880	cmss1	73	55.446	ENSTGUG00000013635	CMSS1	88	55.446	Taeniopygia_guttata
ENSTNIG00000002880	cmss1	99	77.455	ENSTRUG00000015265	cmss1	94	78.229	Takifugu_rubripes
ENSTNIG00000002880	cmss1	73	36.634	ENSTBEG00000016722	CMSS1	72	36.634	Tupaia_belangeri
ENSTNIG00000002880	cmss1	97	44.643	ENSTTRG00000001562	CMSS1	72	53.960	Tursiops_truncatus
ENSTNIG00000002880	cmss1	86	51.271	ENSUAMG00000024209	CMSS1	91	55.941	Ursus_americanus
ENSTNIG00000002880	cmss1	86	51.271	ENSUMAG00000001983	CMSS1	78	55.446	Ursus_maritimus
ENSTNIG00000002880	cmss1	58	53.750	ENSVPAG00000000263	CMSS1	57	53.750	Vicugna_pacos
ENSTNIG00000002880	cmss1	72	55.000	ENSVVUG00000021647	-	82	55.446	Vulpes_vulpes
ENSTNIG00000002880	cmss1	73	54.455	ENSVVUG00000007776	-	80	54.455	Vulpes_vulpes
ENSTNIG00000002880	cmss1	99	50.725	ENSXETG00000011858	cmss1	97	50.725	Xenopus_tropicalis
ENSTNIG00000002880	cmss1	76	71.429	ENSXCOG00000018724	cmss1	70	71.921	Xiphophorus_couchianus
ENSTNIG00000002880	cmss1	76	71.429	ENSXMAG00000011243	cmss1	76	71.921	Xiphophorus_maculatus