EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000003580 (Gene tree)
Gene ID: -
Gene Symbol: a1cf
Alias: acf
Full Name: apobec1 complementation factor
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 4335 bases
Position: chr2:2627553-2631887
Accession: ZDB-GENE-060824-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000006170	DND1_DSRM	PF14709.7	4.1e-27	1	1
ENSTNIP00000006170	RRM_1	PF00076.22	5.3e-40	1	3
ENSTNIP00000006170	RRM_1	PF00076.22	5.3e-40	2	3
ENSTNIP00000006170	RRM_1	PF00076.22	5.3e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000006318	-	1848	-	ENSTNIP00000006170	615 (aa)	-	H3CD47

Gene Model

Click here to download ENSTNIG00000003580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000003580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000003580	a1cf	90	58.730	ENSTNIG00000008714	rbm46	86	60.738
ENSTNIG00000003580	a1cf	94	50.515	ENSTNIG00000006127	rbm47	76	51.306

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000003580	a1cf	100	75.285	ENSG00000148584	A1CF	100	85.644	Homo_sapiens
ENSTNIG00000003580	a1cf	100	80.732	ENSAPOG00000008259	a1cf	100	81.905	Acanthochromis_polyacanthus
ENSTNIG00000003580	a1cf	100	73.821	ENSAMEG00000000523	A1CF	100	74.634	Ailuropoda_melanoleuca
ENSTNIG00000003580	a1cf	100	84.441	ENSACIG00000008632	a1cf	100	86.224	Amphilophus_citrinellus
ENSTNIG00000003580	a1cf	100	82.468	ENSAOCG00000023744	a1cf	100	84.091	Amphiprion_ocellaris
ENSTNIG00000003580	a1cf	100	83.604	ENSAPEG00000009537	a1cf	100	85.227	Amphiprion_percula
ENSTNIG00000003580	a1cf	100	86.201	ENSATEG00000013720	a1cf	100	86.201	Anabas_testudineus
ENSTNIG00000003580	a1cf	100	75.935	ENSAPLG00000002964	A1CF	100	75.610	Anas_platyrhynchos
ENSTNIG00000003580	a1cf	100	73.008	ENSACAG00000015269	A1CF	100	72.846	Anolis_carolinensis
ENSTNIG00000003580	a1cf	100	74.472	ENSANAG00000019974	A1CF	100	74.472	Aotus_nancymaae
ENSTNIG00000003580	a1cf	100	81.361	ENSACLG00000017428	a1cf	100	82.820	Astatotilapia_calliptera
ENSTNIG00000003580	a1cf	100	73.065	ENSAMXG00000018180	a1cf	100	73.065	Astyanax_mexicanus
ENSTNIG00000003580	a1cf	100	74.146	ENSBTAG00000021195	A1CF	100	75.752	Bos_taurus
ENSTNIG00000003580	a1cf	100	75.447	ENSCJAG00000005045	A1CF	100	75.447	Callithrix_jacchus
ENSTNIG00000003580	a1cf	100	74.309	ENSCAFG00000015581	A1CF	100	74.472	Canis_familiaris
ENSTNIG00000003580	a1cf	100	74.309	ENSCAFG00020026421	A1CF	98	81.000	Canis_lupus_dingo
ENSTNIG00000003580	a1cf	100	75.447	ENSCHIG00000020411	A1CF	100	75.772	Capra_hircus
ENSTNIG00000003580	a1cf	94	74.699	ENSTSYG00000001755	A1CF	100	73.838	Carlito_syrichta
ENSTNIG00000003580	a1cf	100	73.700	ENSCAPG00000017386	A1CF	100	73.651	Cavia_aperea
ENSTNIG00000003580	a1cf	100	74.472	ENSCPOG00000009807	A1CF	100	74.472	Cavia_porcellus
ENSTNIG00000003580	a1cf	100	75.610	ENSCCAG00000018168	A1CF	100	75.285	Cebus_capucinus
ENSTNIG00000003580	a1cf	100	73.496	ENSCATG00000043715	A1CF	100	73.821	Cercocebus_atys
ENSTNIG00000003580	a1cf	100	74.472	ENSCLAG00000010424	A1CF	100	74.472	Chinchilla_lanigera
ENSTNIG00000003580	a1cf	100	74.959	ENSCSAG00000007032	A1CF	100	75.285	Chlorocebus_sabaeus
ENSTNIG00000003580	a1cf	95	73.675	ENSCHOG00000009089	A1CF	94	73.675	Choloepus_hoffmanni
ENSTNIG00000003580	a1cf	100	76.585	ENSCPBG00000026464	A1CF	100	75.935	Chrysemys_picta_bellii
ENSTNIG00000003580	a1cf	100	74.797	ENSCANG00000038032	A1CF	100	75.122	Colobus_angolensis_palliatus
ENSTNIG00000003580	a1cf	100	73.984	ENSCGRG00001017413	A1cf	100	74.146	Cricetulus_griseus_chok1gshd
ENSTNIG00000003580	a1cf	100	73.496	ENSCGRG00000017332	A1cf	100	73.821	Cricetulus_griseus_crigri
ENSTNIG00000003580	a1cf	100	84.441	ENSCSEG00000002361	a1cf	100	84.863	Cynoglossus_semilaevis
ENSTNIG00000003580	a1cf	100	86.039	ENSCVAG00000010520	a1cf	100	86.039	Cyprinodon_variegatus
ENSTNIG00000003580	a1cf	100	77.922	ENSDARG00000002968	a1cf	100	77.922	Danio_rerio
ENSTNIG00000003580	a1cf	100	73.984	ENSDNOG00000002829	A1CF	100	74.309	Dasypus_novemcinctus
ENSTNIG00000003580	a1cf	82	78.966	ENSETEG00000012527	A1CF	83	79.239	Echinops_telfairi
ENSTNIG00000003580	a1cf	100	74.513	ENSEASG00005012924	A1CF	100	74.675	Equus_asinus_asinus
ENSTNIG00000003580	a1cf	100	74.188	ENSECAG00000010424	A1CF	100	74.351	Equus_caballus
ENSTNIG00000003580	a1cf	79	64.948	ENSEEUG00000000013	A1CF	97	65.812	Erinaceus_europaeus
ENSTNIG00000003580	a1cf	100	78.862	ENSELUG00000003159	a1cf	100	78.862	Esox_lucius
ENSTNIG00000003580	a1cf	100	72.520	ENSFCAG00000011179	A1CF	100	73.171	Felis_catus
ENSTNIG00000003580	a1cf	100	75.285	ENSFALG00000013183	A1CF	100	74.959	Ficedula_albicollis
ENSTNIG00000003580	a1cf	99	74.135	ENSFDAG00000019371	A1CF	99	74.135	Fukomys_damarensis
ENSTNIG00000003580	a1cf	100	79.221	ENSFHEG00000019652	a1cf	96	89.062	Fundulus_heteroclitus
ENSTNIG00000003580	a1cf	100	75.447	ENSGMOG00000018943	a1cf	100	75.285	Gadus_morhua
ENSTNIG00000003580	a1cf	95	76.117	ENSGALG00000003765	A1CF	96	75.773	Gallus_gallus
ENSTNIG00000003580	a1cf	100	78.247	ENSGAFG00000014868	a1cf	100	78.247	Gambusia_affinis
ENSTNIG00000003580	a1cf	100	84.091	ENSGACG00000010241	a1cf	100	84.253	Gasterosteus_aculeatus
ENSTNIG00000003580	a1cf	96	75.424	ENSGAGG00000016508	A1CF	98	74.746	Gopherus_agassizii
ENSTNIG00000003580	a1cf	100	75.285	ENSGGOG00000009670	A1CF	100	75.285	Gorilla_gorilla
ENSTNIG00000003580	a1cf	100	84.603	ENSHBUG00000021959	a1cf	100	86.062	Haplochromis_burtoni
ENSTNIG00000003580	a1cf	100	74.309	ENSHGLG00000008955	A1CF	100	74.634	Heterocephalus_glaber_female
ENSTNIG00000003580	a1cf	100	73.659	ENSHGLG00100000518	A1CF	100	73.984	Heterocephalus_glaber_male
ENSTNIG00000003580	a1cf	100	72.596	ENSHCOG00000017669	a1cf	100	74.359	Hippocampus_comes
ENSTNIG00000003580	a1cf	89	82.234	ENSIPUG00000010367	a1cf	99	80.560	Ictalurus_punctatus
ENSTNIG00000003580	a1cf	100	85.784	ENSKMAG00000006568	a1cf	100	85.784	Kryptolebias_marmoratus
ENSTNIG00000003580	a1cf	99	87.805	ENSLBEG00000020994	a1cf	99	87.967	Labrus_bergylta
ENSTNIG00000003580	a1cf	100	76.748	ENSLACG00000008061	A1CF	100	76.748	Latimeria_chalumnae
ENSTNIG00000003580	a1cf	100	78.537	ENSLOCG00000006302	a1cf	100	78.537	Lepisosteus_oculatus
ENSTNIG00000003580	a1cf	100	75.772	ENSLAFG00000015462	A1CF	100	75.935	Loxodonta_africana
ENSTNIG00000003580	a1cf	100	73.659	ENSMFAG00000035948	A1CF	100	73.984	Macaca_fascicularis
ENSTNIG00000003580	a1cf	100	73.659	ENSMMUG00000007077	A1CF	100	73.984	Macaca_mulatta
ENSTNIG00000003580	a1cf	100	73.659	ENSMNEG00000031454	A1CF	100	73.984	Macaca_nemestrina
ENSTNIG00000003580	a1cf	100	74.634	ENSMLEG00000037223	A1CF	100	74.959	Mandrillus_leucophaeus
ENSTNIG00000003580	a1cf	100	85.089	ENSMAMG00000010402	a1cf	100	85.900	Mastacembelus_armatus
ENSTNIG00000003580	a1cf	100	84.279	ENSMZEG00005013245	a1cf	100	84.279	Maylandia_zebra
ENSTNIG00000003580	a1cf	100	75.487	ENSMGAG00000001507	A1CF	100	75.162	Meleagris_gallopavo
ENSTNIG00000003580	a1cf	100	73.659	ENSMAUG00000007422	A1cf	100	73.984	Mesocricetus_auratus
ENSTNIG00000003580	a1cf	100	73.744	ENSMICG00000003377	A1CF	100	73.906	Microcebus_murinus
ENSTNIG00000003580	a1cf	100	74.472	ENSMOCG00000021536	A1cf	100	74.472	Microtus_ochrogaster
ENSTNIG00000003580	a1cf	100	74.351	ENSMMOG00000009422	a1cf	100	74.838	Mola_mola
ENSTNIG00000003580	a1cf	89	76.557	ENSMODG00000016478	A1CF	97	76.557	Monodelphis_domestica
ENSTNIG00000003580	a1cf	100	76.948	ENSMALG00000012992	a1cf	100	76.948	Monopterus_albus
ENSTNIG00000003580	a1cf	100	74.472	MGP_CAROLIEiJ_G0022873	A1cf	100	74.472	Mus_caroli
ENSTNIG00000003580	a1cf	100	74.472	ENSMUSG00000052595	A1cf	99	81.333	Mus_musculus
ENSTNIG00000003580	a1cf	100	73.659	MGP_PahariEiJ_G0014366	A1cf	100	73.659	Mus_pahari
ENSTNIG00000003580	a1cf	100	74.309	MGP_SPRETEiJ_G0023792	A1cf	100	74.309	Mus_spretus
ENSTNIG00000003580	a1cf	100	69.268	ENSMPUG00000016971	A1CF	100	69.756	Mustela_putorius_furo
ENSTNIG00000003580	a1cf	100	75.285	ENSMLUG00000016071	A1CF	100	75.447	Myotis_lucifugus
ENSTNIG00000003580	a1cf	100	74.959	ENSNGAG00000015136	A1cf	100	74.959	Nannospalax_galili
ENSTNIG00000003580	a1cf	100	84.603	ENSNBRG00000001712	a1cf	100	86.062	Neolamprologus_brichardi
ENSTNIG00000003580	a1cf	100	75.285	ENSNLEG00000012028	A1CF	100	75.285	Nomascus_leucogenys
ENSTNIG00000003580	a1cf	94	74.182	ENSMEUG00000015909	A1CF	100	74.182	Notamacropus_eugenii
ENSTNIG00000003580	a1cf	79	82.673	ENSOPRG00000010667	A1CF	87	82.673	Ochotona_princeps
ENSTNIG00000003580	a1cf	100	85.251	ENSONIG00000019105	a1cf	100	86.062	Oreochromis_niloticus
ENSTNIG00000003580	a1cf	78	74.587	ENSOANG00000007360	A1CF	99	74.587	Ornithorhynchus_anatinus
ENSTNIG00000003580	a1cf	100	73.171	ENSOCUG00000011587	A1CF	100	73.701	Oryctolagus_cuniculus
ENSTNIG00000003580	a1cf	100	81.686	ENSORLG00000013342	a1cf	100	81.686	Oryzias_latipes
ENSTNIG00000003580	a1cf	100	83.144	ENSORLG00020000586	a1cf	100	84.117	Oryzias_latipes_hni
ENSTNIG00000003580	a1cf	100	83.144	ENSORLG00015018569	a1cf	100	84.117	Oryzias_latipes_hsok
ENSTNIG00000003580	a1cf	100	82.630	ENSOMEG00000013531	a1cf	100	82.630	Oryzias_melastigma
ENSTNIG00000003580	a1cf	100	74.634	ENSOGAG00000012884	A1CF	100	75.122	Otolemur_garnettii
ENSTNIG00000003580	a1cf	100	75.285	ENSOARG00000013695	A1CF	100	75.610	Ovis_aries
ENSTNIG00000003580	a1cf	95	75.171	ENSPPAG00000028115	A1CF	99	79.061	Pan_paniscus
ENSTNIG00000003580	a1cf	100	73.659	ENSPPRG00000012180	A1CF	100	74.309	Panthera_pardus
ENSTNIG00000003580	a1cf	100	73.659	ENSPTIG00000021223	A1CF	100	74.309	Panthera_tigris_altaica
ENSTNIG00000003580	a1cf	100	75.285	ENSPTRG00000002508	A1CF	100	75.285	Pan_troglodytes
ENSTNIG00000003580	a1cf	100	73.659	ENSPANG00000021988	A1CF	100	73.984	Papio_anubis
ENSTNIG00000003580	a1cf	100	77.724	ENSPKIG00000025176	a1cf	100	78.374	Paramormyrops_kingsleyae
ENSTNIG00000003580	a1cf	100	74.797	ENSPSIG00000010318	A1CF	100	74.146	Pelodiscus_sinensis
ENSTNIG00000003580	a1cf	98	70.083	ENSPMGG00000013359	a1cf	99	71.122	Periophthalmus_magnuspinnatus
ENSTNIG00000003580	a1cf	100	74.472	ENSPEMG00000015021	A1cf	100	74.472	Peromyscus_maniculatus_bairdii
ENSTNIG00000003580	a1cf	100	74.309	ENSPCIG00000002175	A1CF	100	74.309	Phascolarctos_cinereus
ENSTNIG00000003580	a1cf	100	86.851	ENSPFOG00000006683	a1cf	100	86.851	Poecilia_formosa
ENSTNIG00000003580	a1cf	100	86.688	ENSPFOG00000007437	-	100	86.688	Poecilia_formosa
ENSTNIG00000003580	a1cf	100	85.227	ENSPLAG00000000026	a1cf	100	85.227	Poecilia_latipinna
ENSTNIG00000003580	a1cf	100	85.227	ENSPLAG00000001210	-	100	85.227	Poecilia_latipinna
ENSTNIG00000003580	a1cf	100	79.221	ENSPMEG00000015529	-	100	78.896	Poecilia_mexicana
ENSTNIG00000003580	a1cf	100	77.922	ENSPMEG00000000921	a1cf	100	77.597	Poecilia_mexicana
ENSTNIG00000003580	a1cf	100	86.526	ENSPREG00000016298	a1cf	100	86.526	Poecilia_reticulata
ENSTNIG00000003580	a1cf	100	74.146	ENSPPYG00000002819	A1CF	100	74.146	Pongo_abelii
ENSTNIG00000003580	a1cf	80	58.130	ENSPCAG00000006463	A1CF	79	58.130	Procavia_capensis
ENSTNIG00000003580	a1cf	100	74.472	ENSPCOG00000024172	A1CF	100	75.000	Propithecus_coquereli
ENSTNIG00000003580	a1cf	100	86.224	ENSPNYG00000017944	a1cf	100	87.682	Pundamilia_nyererei
ENSTNIG00000003580	a1cf	100	78.964	ENSPNAG00000007704	a1cf	100	79.126	Pygocentrus_nattereri
ENSTNIG00000003580	a1cf	100	73.333	ENSRNOG00000033195	A1cf	100	73.333	Rattus_norvegicus
ENSTNIG00000003580	a1cf	100	69.692	ENSRBIG00000042892	A1CF	100	72.264	Rhinopithecus_bieti
ENSTNIG00000003580	a1cf	100	74.797	ENSRROG00000041398	A1CF	100	75.122	Rhinopithecus_roxellana
ENSTNIG00000003580	a1cf	100	75.447	ENSSBOG00000021930	A1CF	100	75.447	Saimiri_boliviensis_boliviensis
ENSTNIG00000003580	a1cf	100	74.472	ENSSHAG00000005096	A1CF	100	74.472	Sarcophilus_harrisii
ENSTNIG00000003580	a1cf	100	79.126	ENSSFOG00015011774	a1cf	100	79.288	Scleropages_formosus
ENSTNIG00000003580	a1cf	100	85.922	ENSSMAG00000013271	a1cf	100	86.084	Scophthalmus_maximus
ENSTNIG00000003580	a1cf	100	85.877	ENSSDUG00000013930	a1cf	100	85.877	Seriola_dumerili
ENSTNIG00000003580	a1cf	100	77.922	ENSSLDG00000004290	a1cf	100	77.922	Seriola_lalandi_dorsalis
ENSTNIG00000003580	a1cf	86	87.719	ENSSARG00000005940	A1CF	86	87.719	Sorex_araneus
ENSTNIG00000003580	a1cf	97	74.372	ENSSPUG00000006797	A1CF	95	74.533	Sphenodon_punctatus
ENSTNIG00000003580	a1cf	100	75.447	ENSSSCG00000010431	A1CF	100	75.610	Sus_scrofa
ENSTNIG00000003580	a1cf	100	76.461	ENSTGUG00000005090	A1CF	100	76.136	Taeniopygia_guttata
ENSTNIG00000003580	a1cf	100	93.344	ENSTRUG00000001982	a1cf	100	94.156	Takifugu_rubripes
ENSTNIG00000003580	a1cf	95	69.692	ENSTTRG00000013190	A1CF	94	70.034	Tursiops_truncatus
ENSTNIG00000003580	a1cf	100	73.171	ENSUAMG00000020065	A1CF	100	73.333	Ursus_americanus
ENSTNIG00000003580	a1cf	100	73.821	ENSUMAG00000011162	A1CF	100	74.309	Ursus_maritimus
ENSTNIG00000003580	a1cf	87	70.872	ENSVPAG00000006130	A1CF	86	70.872	Vicugna_pacos
ENSTNIG00000003580	a1cf	100	73.171	ENSVVUG00000002504	A1CF	100	73.496	Vulpes_vulpes
ENSTNIG00000003580	a1cf	100	69.481	ENSXETG00000006611	a1cf	100	69.481	Xenopus_tropicalis
ENSTNIG00000003580	a1cf	100	85.552	ENSXCOG00000003302	a1cf	100	85.552	Xiphophorus_couchianus
ENSTNIG00000003580	a1cf	100	86.851	ENSXMAG00000016703	a1cf	100	86.851	Xiphophorus_maculatus