EuRBPDB

Description

Ensembl ID: ENSTNIG00000003926 (Gene tree)
Gene ID: -
Gene Symbol: prdm1a
Alias: Blimp-1|Blimp1|U boot|narrowminded|nrd|prdm1|u-boot|ubo|wu:fb99c12|zgc:91885
Full Name: PR domain containing 1a%2C with ZNF domain
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 5272 bases
Position: chrUn_random:34667434-34672705
Accession: ZDB-GENE-030131-2193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000003375	zf-C2H2	PF00096.26	1.1e-16	1	3
ENSTNIP00000003375	zf-C2H2	PF00096.26	1.1e-16	2	3
ENSTNIP00000003375	zf-C2H2	PF00096.26	1.1e-16	3	3
ENSTNIP00000006534	zf-C2H2	PF00096.26	1.3e-16	1	3
ENSTNIP00000006534	zf-C2H2	PF00096.26	1.3e-16	2	3
ENSTNIP00000006534	zf-C2H2	PF00096.26	1.3e-16	3	3
ENSTNIP00000003375	zf-met	PF12874.7	5.1e-06	1	1
ENSTNIP00000006534	zf-met	PF12874.7	5.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000000103	-	1932	-	ENSTNIP00000003375	644 (aa)	-	H3C556
ENSTNIT00000006684	-	1986	-	ENSTNIP00000006534	661 (aa)	-	H3CE60

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000003926	prdm1a	56	42.553	ENSTNIG00000019069	-	96	41.844

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000003926	prdm1a	99	41.940	ENSAPOG00000014135	-	79	42.836	Acanthochromis_polyacanthus
ENSTNIG00000003926	prdm1a	99	75.573	ENSATEG00000021017	prdm1a	83	75.725	Anabas_testudineus
ENSTNIG00000003926	prdm1a	99	43.946	ENSATEG00000014034	-	80	42.090	Anabas_testudineus
ENSTNIG00000003926	prdm1a	99	76.497	ENSCSEG00000009707	prdm1a	83	74.273	Cynoglossus_semilaevis
ENSTNIG00000003926	prdm1a	99	75.672	ENSCVAG00000019081	prdm1a	84	73.423	Cyprinodon_variegatus
ENSTNIG00000003926	prdm1a	64	70.000	ENSGAFG00000016191	prdm1b	50	70.000	Gambusia_affinis
ENSTNIG00000003926	prdm1a	99	65.030	ENSKMAG00000017597	prdm1a	81	69.820	Kryptolebias_marmoratus
ENSTNIG00000003926	prdm1a	86	45.969	ENSONIG00000014709	-	83	43.328	Oreochromis_niloticus
ENSTNIG00000003926	prdm1a	91	40.686	ENSPREG00000011327	prdm1b	50	70.000	Poecilia_reticulata
ENSTNIG00000003926	prdm1a	91	52.558	ENSPVAG00000011732	PRDM1	77	51.858	Pteropus_vampyrus
ENSTNIG00000003926	prdm1a	99	60.550	ENSPNAG00000028442	prdm1a	79	59.877	Pygocentrus_nattereri
ENSTNIG00000003926	prdm1a	99	43.516	ENSSDUG00000000524	-	79	43.427	Seriola_dumerili
ENSTNIG00000003926	prdm1a	99	42.837	ENSSLDG00000001957	-	79	42.415	Seriola_lalandi_dorsalis
ENSTNIG00000003926	prdm1a	99	43.804	ENSSPAG00000009830	-	79	42.980	Stegastes_partitus
ENSTNIG00000003926	prdm1a	87	59.184	ENSSPAG00000000803	prdm1b	51	72.000	Stegastes_partitus
ENSTNIG00000003926	prdm1a	90	40.496	ENSXMAG00000016765	prdm1b	52	70.000	Xiphophorus_maculatus