EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000004055 (Gene tree)
Gene ID: -
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 1040 bases
Position: chrUn_random:65942413-65943452
Accession: ZDB-GENE-040801-68
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000006666	LSM	PF01423.22	2.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000006817	-	702	-	ENSTNIP00000006666	133 (aa)	-	Q4T5T8

Gene Model

Click here to download ENSTNIG00000004055's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000004055's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000004055	lsm1	100	86.466	ENSG00000175324	LSM1	100	86.466	Homo_sapiens
ENSTNIG00000004055	lsm1	100	90.977	ENSAPOG00000010833	lsm1	100	90.977	Acanthochromis_polyacanthus
ENSTNIG00000004055	lsm1	100	86.466	ENSAMEG00000011141	LSM1	100	86.466	Ailuropoda_melanoleuca
ENSTNIG00000004055	lsm1	58	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSTNIG00000004055	lsm1	100	90.977	ENSAOCG00000017096	lsm1	100	90.977	Amphiprion_ocellaris
ENSTNIG00000004055	lsm1	100	90.977	ENSAOCG00000017997	-	100	90.977	Amphiprion_ocellaris
ENSTNIG00000004055	lsm1	100	90.977	ENSAPEG00000011669	lsm1	100	90.977	Amphiprion_percula
ENSTNIG00000004055	lsm1	100	92.481	ENSATEG00000022266	lsm1	100	92.481	Anabas_testudineus
ENSTNIG00000004055	lsm1	100	86.466	ENSANAG00000027785	LSM1	100	86.466	Aotus_nancymaae
ENSTNIG00000004055	lsm1	100	92.481	ENSACLG00000011400	lsm1	100	92.481	Astatotilapia_calliptera
ENSTNIG00000004055	lsm1	100	84.211	ENSAMXG00000005441	lsm1	100	84.211	Astyanax_mexicanus
ENSTNIG00000004055	lsm1	100	85.714	ENSBTAG00000001612	LSM1	100	85.714	Bos_taurus
ENSTNIG00000004055	lsm1	87	50.000	WBGene00003076	lsm-1	90	50.000	Caenorhabditis_elegans
ENSTNIG00000004055	lsm1	100	85.714	ENSCJAG00000048015	LSM1	100	85.714	Callithrix_jacchus
ENSTNIG00000004055	lsm1	100	86.466	ENSCAFG00000006113	LSM1	100	86.466	Canis_familiaris
ENSTNIG00000004055	lsm1	100	86.466	ENSCAFG00020001822	LSM1	100	86.466	Canis_lupus_dingo
ENSTNIG00000004055	lsm1	100	86.466	ENSCHIG00000013194	LSM1	100	86.466	Capra_hircus
ENSTNIG00000004055	lsm1	100	86.466	ENSTSYG00000010394	LSM1	100	86.466	Carlito_syrichta
ENSTNIG00000004055	lsm1	100	86.466	ENSCPOG00000032671	LSM1	100	86.466	Cavia_porcellus
ENSTNIG00000004055	lsm1	100	86.466	ENSCCAG00000037171	LSM1	100	86.466	Cebus_capucinus
ENSTNIG00000004055	lsm1	100	86.466	ENSCATG00000020377	LSM1	100	86.466	Cercocebus_atys
ENSTNIG00000004055	lsm1	100	84.962	ENSCLAG00000001137	LSM1	100	84.962	Chinchilla_lanigera
ENSTNIG00000004055	lsm1	100	86.466	ENSCSAG00000015485	LSM1	100	86.466	Chlorocebus_sabaeus
ENSTNIG00000004055	lsm1	100	86.466	ENSCHOG00000006030	LSM1	100	86.466	Choloepus_hoffmanni
ENSTNIG00000004055	lsm1	95	81.890	ENSCPBG00000006569	LSM1	86	81.890	Chrysemys_picta_bellii
ENSTNIG00000004055	lsm1	99	63.636	ENSCING00000013536	-	99	63.636	Ciona_intestinalis
ENSTNIG00000004055	lsm1	100	86.466	ENSCANG00000019173	LSM1	100	86.466	Colobus_angolensis_palliatus
ENSTNIG00000004055	lsm1	80	72.973	ENSCGRG00001002259	-	97	72.973	Cricetulus_griseus_chok1gshd
ENSTNIG00000004055	lsm1	100	85.714	ENSCGRG00001024560	-	100	85.714	Cricetulus_griseus_chok1gshd
ENSTNIG00000004055	lsm1	80	72.973	ENSCGRG00000013603	-	97	72.973	Cricetulus_griseus_crigri
ENSTNIG00000004055	lsm1	100	85.714	ENSCGRG00000006554	-	100	85.714	Cricetulus_griseus_crigri
ENSTNIG00000004055	lsm1	100	90.977	ENSCSEG00000008319	lsm1	92	90.977	Cynoglossus_semilaevis
ENSTNIG00000004055	lsm1	100	92.481	ENSCSEG00000010570	lsm1	92	92.481	Cynoglossus_semilaevis
ENSTNIG00000004055	lsm1	100	91.729	ENSCVAG00000003871	lsm1	100	91.729	Cyprinodon_variegatus
ENSTNIG00000004055	lsm1	100	83.459	ENSDARG00000043177	lsm1	100	83.459	Danio_rerio
ENSTNIG00000004055	lsm1	100	86.466	ENSDNOG00000046387	-	100	86.466	Dasypus_novemcinctus
ENSTNIG00000004055	lsm1	99	81.818	ENSDNOG00000030989	-	99	81.818	Dasypus_novemcinctus
ENSTNIG00000004055	lsm1	100	85.714	ENSDNOG00000032911	-	100	85.714	Dasypus_novemcinctus
ENSTNIG00000004055	lsm1	89	68.067	ENSDNOG00000046620	-	100	68.067	Dasypus_novemcinctus
ENSTNIG00000004055	lsm1	100	86.466	ENSDORG00000028172	Lsm1	100	86.466	Dipodomys_ordii
ENSTNIG00000004055	lsm1	93	60.484	FBgn0261067	LSm1	91	60.484	Drosophila_melanogaster
ENSTNIG00000004055	lsm1	100	86.466	ENSEASG00005016677	LSM1	100	86.466	Equus_asinus_asinus
ENSTNIG00000004055	lsm1	100	86.466	ENSECAG00000010461	LSM1	100	86.466	Equus_caballus
ENSTNIG00000004055	lsm1	72	78.125	ENSEEUG00000015181	LSM1	97	78.125	Erinaceus_europaeus
ENSTNIG00000004055	lsm1	100	90.977	ENSELUG00000002322	lsm1	100	90.977	Esox_lucius
ENSTNIG00000004055	lsm1	100	77.444	ENSELUG00000023374	lsm1	100	77.444	Esox_lucius
ENSTNIG00000004055	lsm1	100	86.466	ENSFCAG00000039335	LSM1	100	86.466	Felis_catus
ENSTNIG00000004055	lsm1	89	86.441	ENSFALG00000006723	LSM1	100	86.441	Ficedula_albicollis
ENSTNIG00000004055	lsm1	100	86.466	ENSFDAG00000007658	LSM1	100	86.466	Fukomys_damarensis
ENSTNIG00000004055	lsm1	100	91.729	ENSFHEG00000009556	lsm1	100	91.729	Fundulus_heteroclitus
ENSTNIG00000004055	lsm1	100	91.729	ENSGMOG00000016651	lsm1	98	91.729	Gadus_morhua
ENSTNIG00000004055	lsm1	100	85.714	ENSGALG00000003245	LSM1	100	85.714	Gallus_gallus
ENSTNIG00000004055	lsm1	100	91.729	ENSGAFG00000011355	lsm1	100	91.729	Gambusia_affinis
ENSTNIG00000004055	lsm1	100	92.481	ENSGACG00000011763	lsm1	98	92.481	Gasterosteus_aculeatus
ENSTNIG00000004055	lsm1	100	87.970	ENSGAGG00000024065	LSM1	100	87.970	Gopherus_agassizii
ENSTNIG00000004055	lsm1	100	86.466	ENSGGOG00000022658	LSM1	100	86.466	Gorilla_gorilla
ENSTNIG00000004055	lsm1	100	92.481	ENSHBUG00000010897	lsm1	100	92.481	Haplochromis_burtoni
ENSTNIG00000004055	lsm1	100	86.466	ENSHGLG00000005711	LSM1	100	86.466	Heterocephalus_glaber_female
ENSTNIG00000004055	lsm1	100	67.669	ENSHGLG00000017574	-	100	67.669	Heterocephalus_glaber_female
ENSTNIG00000004055	lsm1	100	67.669	ENSHGLG00100012152	-	100	67.669	Heterocephalus_glaber_male
ENSTNIG00000004055	lsm1	100	86.466	ENSHGLG00100017660	LSM1	100	86.466	Heterocephalus_glaber_male
ENSTNIG00000004055	lsm1	100	90.977	ENSHCOG00000017233	lsm1	100	90.977	Hippocampus_comes
ENSTNIG00000004055	lsm1	100	83.459	ENSIPUG00000002312	LSM1	100	83.459	Ictalurus_punctatus
ENSTNIG00000004055	lsm1	58	92.208	ENSSTOG00000026870	LSM1	94	92.208	Ictidomys_tridecemlineatus
ENSTNIG00000004055	lsm1	100	85.714	ENSJJAG00000014605	-	100	85.714	Jaculus_jaculus
ENSTNIG00000004055	lsm1	100	92.481	ENSKMAG00000003016	lsm1	100	92.481	Kryptolebias_marmoratus
ENSTNIG00000004055	lsm1	100	92.481	ENSLBEG00000022352	lsm1	100	92.481	Labrus_bergylta
ENSTNIG00000004055	lsm1	89	83.898	ENSLACG00000010947	LSM1	98	83.898	Latimeria_chalumnae
ENSTNIG00000004055	lsm1	100	87.218	ENSLOCG00000015149	lsm1	100	87.218	Lepisosteus_oculatus
ENSTNIG00000004055	lsm1	100	86.466	ENSLAFG00000003534	LSM1	100	86.466	Loxodonta_africana
ENSTNIG00000004055	lsm1	100	86.466	ENSMFAG00000032661	LSM1	100	86.466	Macaca_fascicularis
ENSTNIG00000004055	lsm1	100	86.466	ENSMLEG00000034535	LSM1	100	86.466	Mandrillus_leucophaeus
ENSTNIG00000004055	lsm1	100	92.481	ENSMAMG00000007464	lsm1	100	92.481	Mastacembelus_armatus
ENSTNIG00000004055	lsm1	100	92.481	ENSMZEG00005010321	lsm1	100	92.481	Maylandia_zebra
ENSTNIG00000004055	lsm1	100	85.714	ENSMGAG00000002125	LSM1	100	85.714	Meleagris_gallopavo
ENSTNIG00000004055	lsm1	100	86.466	ENSMICG00000030726	LSM1	100	86.466	Microcebus_murinus
ENSTNIG00000004055	lsm1	100	85.714	ENSMOCG00000022817	Lsm1	100	85.714	Microtus_ochrogaster
ENSTNIG00000004055	lsm1	100	91.729	ENSMMOG00000015466	lsm1	100	91.729	Mola_mola
ENSTNIG00000004055	lsm1	100	87.218	ENSMODG00000010732	-	100	87.218	Monodelphis_domestica
ENSTNIG00000004055	lsm1	58	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSTNIG00000004055	lsm1	100	84.211	MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	Mus_caroli
ENSTNIG00000004055	lsm1	100	84.211	ENSMUSG00000037296	Lsm1	100	84.211	Mus_musculus
ENSTNIG00000004055	lsm1	100	84.211	MGP_PahariEiJ_G0021400	Lsm1	100	84.211	Mus_pahari
ENSTNIG00000004055	lsm1	100	84.211	MGP_SPRETEiJ_G0032049	Lsm1	100	84.211	Mus_spretus
ENSTNIG00000004055	lsm1	100	87.218	ENSMPUG00000009883	LSM1	100	87.218	Mustela_putorius_furo
ENSTNIG00000004055	lsm1	100	86.466	ENSMLUG00000003734	LSM1	100	86.466	Myotis_lucifugus
ENSTNIG00000004055	lsm1	100	85.714	ENSNGAG00000003753	Lsm1	100	85.714	Nannospalax_galili
ENSTNIG00000004055	lsm1	58	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSTNIG00000004055	lsm1	100	86.466	ENSNLEG00000029390	LSM1	100	86.466	Nomascus_leucogenys
ENSTNIG00000004055	lsm1	100	87.218	ENSMEUG00000014077	LSM1	100	87.218	Notamacropus_eugenii
ENSTNIG00000004055	lsm1	88	82.906	ENSOPRG00000000333	LSM1	100	82.906	Ochotona_princeps
ENSTNIG00000004055	lsm1	100	86.466	ENSODEG00000004834	LSM1	100	86.466	Octodon_degus
ENSTNIG00000004055	lsm1	100	92.481	ENSONIG00000010782	lsm1	100	92.481	Oreochromis_niloticus
ENSTNIG00000004055	lsm1	100	87.218	ENSOANG00000003256	LSM1	100	87.218	Ornithorhynchus_anatinus
ENSTNIG00000004055	lsm1	100	86.466	ENSOCUG00000015399	LSM1	100	86.466	Oryctolagus_cuniculus
ENSTNIG00000004055	lsm1	100	93.985	ENSORLG00000030288	lsm1	100	93.985	Oryzias_latipes
ENSTNIG00000004055	lsm1	100	92.481	ENSORLG00020006213	-	86	92.481	Oryzias_latipes_hni
ENSTNIG00000004055	lsm1	100	93.985	ENSORLG00020003941	lsm1	100	93.985	Oryzias_latipes_hni
ENSTNIG00000004055	lsm1	100	93.985	ENSORLG00015018350	lsm1	100	93.985	Oryzias_latipes_hsok
ENSTNIG00000004055	lsm1	100	93.233	ENSOMEG00000012454	lsm1	100	93.233	Oryzias_melastigma
ENSTNIG00000004055	lsm1	100	86.466	ENSOGAG00000015161	LSM1	100	86.466	Otolemur_garnettii
ENSTNIG00000004055	lsm1	100	86.466	ENSOARG00000001317	LSM1	100	86.466	Ovis_aries
ENSTNIG00000004055	lsm1	100	86.466	ENSPPAG00000032279	LSM1	100	86.466	Pan_paniscus
ENSTNIG00000004055	lsm1	100	86.466	ENSPPRG00000014172	-	100	86.466	Panthera_pardus
ENSTNIG00000004055	lsm1	100	86.466	ENSPTIG00000010289	LSM1	100	86.466	Panthera_tigris_altaica
ENSTNIG00000004055	lsm1	100	86.466	ENSPTRG00000020169	LSM1	100	86.466	Pan_troglodytes
ENSTNIG00000004055	lsm1	100	86.466	ENSPANG00000008814	LSM1	100	86.466	Papio_anubis
ENSTNIG00000004055	lsm1	100	78.195	ENSPKIG00000019409	LSM1	99	78.195	Paramormyrops_kingsleyae
ENSTNIG00000004055	lsm1	100	85.714	ENSPKIG00000001839	lsm1	100	85.714	Paramormyrops_kingsleyae
ENSTNIG00000004055	lsm1	97	82.946	ENSPSIG00000012563	LSM1	98	82.946	Pelodiscus_sinensis
ENSTNIG00000004055	lsm1	58	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSTNIG00000004055	lsm1	85	75.221	ENSPMAG00000002671	lsm1	100	75.221	Petromyzon_marinus
ENSTNIG00000004055	lsm1	100	86.466	ENSPCIG00000008880	LSM1	100	86.466	Phascolarctos_cinereus
ENSTNIG00000004055	lsm1	100	91.729	ENSPFOG00000016029	lsm1	100	91.729	Poecilia_formosa
ENSTNIG00000004055	lsm1	100	91.729	ENSPLAG00000007879	lsm1	100	91.729	Poecilia_latipinna
ENSTNIG00000004055	lsm1	100	91.729	ENSPMEG00000023550	lsm1	100	91.729	Poecilia_mexicana
ENSTNIG00000004055	lsm1	100	91.729	ENSPREG00000009574	lsm1	100	91.729	Poecilia_reticulata
ENSTNIG00000004055	lsm1	100	86.466	ENSPPYG00000018521	LSM1	100	86.466	Pongo_abelii
ENSTNIG00000004055	lsm1	100	86.466	ENSPCOG00000020901	-	100	86.466	Propithecus_coquereli
ENSTNIG00000004055	lsm1	100	86.466	ENSPVAG00000006016	LSM1	100	86.466	Pteropus_vampyrus
ENSTNIG00000004055	lsm1	100	92.481	ENSPNYG00000018067	lsm1	100	92.481	Pundamilia_nyererei
ENSTNIG00000004055	lsm1	100	83.459	ENSPNAG00000013707	lsm1	100	83.459	Pygocentrus_nattereri
ENSTNIG00000004055	lsm1	100	84.962	ENSRNOG00000015375	Lsm1	100	84.962	Rattus_norvegicus
ENSTNIG00000004055	lsm1	100	86.466	ENSRBIG00000027449	LSM1	100	86.466	Rhinopithecus_bieti
ENSTNIG00000004055	lsm1	100	86.466	ENSRROG00000036074	LSM1	100	86.466	Rhinopithecus_roxellana
ENSTNIG00000004055	lsm1	83	43.590	YJL124C	LSM1	67	43.590	Saccharomyces_cerevisiae
ENSTNIG00000004055	lsm1	100	87.218	ENSSHAG00000017260	LSM1	100	87.218	Sarcophilus_harrisii
ENSTNIG00000004055	lsm1	100	85.714	ENSSFOG00015019528	lsm1	100	85.714	Scleropages_formosus
ENSTNIG00000004055	lsm1	100	92.481	ENSSMAG00000004930	lsm1	100	92.481	Scophthalmus_maximus
ENSTNIG00000004055	lsm1	100	91.729	ENSSDUG00000021823	lsm1	100	91.729	Seriola_dumerili
ENSTNIG00000004055	lsm1	100	91.729	ENSSLDG00000012154	lsm1	100	91.729	Seriola_lalandi_dorsalis
ENSTNIG00000004055	lsm1	100	87.970	ENSSPUG00000014878	LSM1	100	87.970	Sphenodon_punctatus
ENSTNIG00000004055	lsm1	100	91.729	ENSSPAG00000020548	lsm1	100	91.729	Stegastes_partitus
ENSTNIG00000004055	lsm1	100	86.466	ENSSSCG00000039058	LSM1	100	86.466	Sus_scrofa
ENSTNIG00000004055	lsm1	100	87.970	ENSTGUG00000004793	LSM1	100	87.970	Taeniopygia_guttata
ENSTNIG00000004055	lsm1	100	96.241	ENSTRUG00000025239	lsm1	100	96.241	Takifugu_rubripes
ENSTNIG00000004055	lsm1	88	84.615	ENSTBEG00000015884	LSM1	100	84.615	Tupaia_belangeri
ENSTNIG00000004055	lsm1	100	86.466	ENSTTRG00000004482	LSM1	100	86.466	Tursiops_truncatus
ENSTNIG00000004055	lsm1	100	86.466	ENSUAMG00000004103	LSM1	100	86.466	Ursus_americanus
ENSTNIG00000004055	lsm1	100	86.466	ENSUMAG00000009132	LSM1	100	86.466	Ursus_maritimus
ENSTNIG00000004055	lsm1	58	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSTNIG00000004055	lsm1	100	86.466	ENSVVUG00000020191	LSM1	100	86.466	Vulpes_vulpes
ENSTNIG00000004055	lsm1	67	59.140	ENSVVUG00000014880	-	99	59.140	Vulpes_vulpes
ENSTNIG00000004055	lsm1	100	82.482	ENSXETG00000009004	lsm1	100	82.482	Xenopus_tropicalis
ENSTNIG00000004055	lsm1	100	91.729	ENSXCOG00000015631	lsm1	100	91.729	Xiphophorus_couchianus
ENSTNIG00000004055	lsm1	100	91.729	ENSXMAG00000026637	lsm1	100	91.729	Xiphophorus_maculatus