EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000004178 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat containing 6C2
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 10208 bases
Position: chrUn_random:38973404-38983611
Accession: ZDB-GENE-061207-48
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000006799	RRM_1	PF00076.22	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000006950	-	4818	-	ENSTNIP00000006799	1605 (aa)	-	H3CEX5

Gene Model

Click here to download ENSTNIG00000004178's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000004178's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000004178	tnrc6c2	100	51.180	ENSTNIG00000005273	tnrc6c1	93	63.541

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000004178	tnrc6c2	95	84.573	ENSAOCG00000017648	tnrc6c2	84	84.683	Amphiprion_ocellaris
ENSTNIG00000004178	tnrc6c2	95	74.614	ENSATEG00000003656	tnrc6c2	100	74.194	Anabas_testudineus
ENSTNIG00000004178	tnrc6c2	94	84.573	ENSACLG00000006469	tnrc6c2	85	85.011	Astatotilapia_calliptera
ENSTNIG00000004178	tnrc6c2	92	67.367	ENSAMXG00000009579	tnrc6c2	93	67.447	Astyanax_mexicanus
ENSTNIG00000004178	tnrc6c2	96	69.878	ENSDARG00000103851	tnrc6c2	93	68.556	Danio_rerio
ENSTNIG00000004178	tnrc6c2	93	64.333	ENSELUG00000008149	-	80	71.907	Esox_lucius
ENSTNIG00000004178	tnrc6c2	95	56.309	ENSELUG00000007206	tnrc6c2	99	56.129	Esox_lucius
ENSTNIG00000004178	tnrc6c2	94	81.332	ENSFHEG00000003901	tnrc6c2	92	81.987	Fundulus_heteroclitus
ENSTNIG00000004178	tnrc6c2	97	79.217	ENSGACG00000019401	tnrc6c2	94	69.935	Gasterosteus_aculeatus
ENSTNIG00000004178	tnrc6c2	94	84.573	ENSHBUG00000018310	tnrc6c2	85	85.011	Haplochromis_burtoni
ENSTNIG00000004178	tnrc6c2	95	81.848	ENSHCOG00000017802	tnrc6c2	84	81.630	Hippocampus_comes
ENSTNIG00000004178	tnrc6c2	92	59.477	ENSIPUG00000022767	tnrc6c2	92	59.368	Ictalurus_punctatus
ENSTNIG00000004178	tnrc6c2	90	83.917	ENSMAMG00000001718	tnrc6c2	92	84.464	Mastacembelus_armatus
ENSTNIG00000004178	tnrc6c2	94	84.573	ENSMZEG00005023905	tnrc6c2	85	85.011	Maylandia_zebra
ENSTNIG00000004178	tnrc6c2	90	84.079	ENSMALG00000020932	tnrc6c2	92	85.169	Monopterus_albus
ENSTNIG00000004178	tnrc6c2	95	74.694	ENSNBRG00000000452	tnrc6c2	100	73.971	Neolamprologus_brichardi
ENSTNIG00000004178	tnrc6c2	87	85.777	ENSONIG00000018123	tnrc6c2	100	75.254	Oreochromis_niloticus
ENSTNIG00000004178	tnrc6c2	94	82.804	ENSORLG00000003327	tnrc6c2	84	81.469	Oryzias_latipes
ENSTNIG00000004178	tnrc6c2	94	82.475	ENSORLG00020010730	tnrc6c2	84	81.140	Oryzias_latipes_hni
ENSTNIG00000004178	tnrc6c2	94	82.256	ENSORLG00015009232	tnrc6c2	84	81.051	Oryzias_latipes_hsok
ENSTNIG00000004178	tnrc6c2	94	83.461	ENSOMEG00000017952	tnrc6c2	84	82.127	Oryzias_melastigma
ENSTNIG00000004178	tnrc6c2	99	66.887	ENSPFOG00000011590	tnrc6c2	95	80.916	Poecilia_formosa
ENSTNIG00000004178	tnrc6c2	95	69.932	ENSPLAG00000006992	tnrc6c2	100	69.747	Poecilia_latipinna
ENSTNIG00000004178	tnrc6c2	94	82.842	ENSPMEG00000012946	tnrc6c2	89	83.279	Poecilia_mexicana
ENSTNIG00000004178	tnrc6c2	95	70.680	ENSPREG00000015823	tnrc6c2	100	70.717	Poecilia_reticulata
ENSTNIG00000004178	tnrc6c2	90	84.464	ENSPNYG00000002582	tnrc6c2	91	84.902	Pundamilia_nyererei
ENSTNIG00000004178	tnrc6c2	90	67.257	ENSPNAG00000026838	tnrc6c2	93	66.887	Pygocentrus_nattereri
ENSTNIG00000004178	tnrc6c2	89	83.571	ENSSMAG00000015145	tnrc6c2	92	83.790	Scophthalmus_maximus
ENSTNIG00000004178	tnrc6c2	89	86.871	ENSSDUG00000020741	tnrc6c2	92	85.886	Seriola_dumerili
ENSTNIG00000004178	tnrc6c2	89	86.871	ENSSLDG00000002077	tnrc6c2	92	85.542	Seriola_lalandi_dorsalis
ENSTNIG00000004178	tnrc6c2	95	84.809	ENSSPAG00000013052	tnrc6c2	84	85.902	Stegastes_partitus
ENSTNIG00000004178	tnrc6c2	95	68.127	ENSXCOG00000013252	tnrc6c2	100	68.926	Xiphophorus_couchianus
ENSTNIG00000004178	tnrc6c2	90	83.188	ENSXMAG00000006739	tnrc6c2	90	82.969	Xiphophorus_maculatus