EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000004320 (Gene tree)
Gene ID: -
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 13492 bases
Position: chrUn_random:30869026-30882517
Accession: ZDB-GENE-081105-64
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000006950	ResIII	PF04851.15	8.3e-21	1	2
ENSTNIP00000006950	ResIII	PF04851.15	8.3e-21	2	2
ENSTNIP00000006950	DEAD	PF00270.29	1.8e-45	1	2
ENSTNIP00000006950	DEAD	PF00270.29	1.8e-45	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000007104	-	5958	-	ENSTNIP00000006950	1986 (aa)	-	H3CFC6

Gene Model

Click here to download ENSTNIG00000004320's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000004320's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000004320	snrnp200	84	44.045	ENSTNIG00000005079	ascc3	75	44.141

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000004320	snrnp200	100	85.925	ENSG00000144028	SNRNP200	100	85.925	Homo_sapiens
ENSTNIG00000004320	snrnp200	100	85.040	ENSAPOG00000010223	snrnp200	99	85.040	Acanthochromis_polyacanthus
ENSTNIG00000004320	snrnp200	100	85.992	ENSAMEG00000008996	SNRNP200	100	85.992	Ailuropoda_melanoleuca
ENSTNIG00000004320	snrnp200	97	82.567	ENSACIG00000001764	snrnp200	98	90.972	Amphilophus_citrinellus
ENSTNIG00000004320	snrnp200	100	84.993	ENSAOCG00000024593	snrnp200	99	91.111	Amphiprion_ocellaris
ENSTNIG00000004320	snrnp200	97	82.513	ENSAPEG00000012554	snrnp200	99	91.111	Amphiprion_percula
ENSTNIG00000004320	snrnp200	99	84.850	ENSATEG00000022522	snrnp200	99	92.287	Anabas_testudineus
ENSTNIG00000004320	snrnp200	99	79.200	ENSAPLG00000004313	SNRNP200	100	86.053	Anas_platyrhynchos
ENSTNIG00000004320	snrnp200	96	85.724	ENSACAG00000000434	SNRNP200	100	85.724	Anolis_carolinensis
ENSTNIG00000004320	snrnp200	100	86.228	ENSANAG00000036625	SNRNP200	100	86.228	Aotus_nancymaae
ENSTNIG00000004320	snrnp200	99	84.381	ENSACLG00000011188	snrnp200	99	91.415	Astatotilapia_calliptera
ENSTNIG00000004320	snrnp200	99	82.223	ENSAMXG00000005684	snrnp200	99	89.068	Astyanax_mexicanus
ENSTNIG00000004320	snrnp200	100	85.791	ENSBTAG00000000848	SNRNP200	100	85.791	Bos_taurus
ENSTNIG00000004320	snrnp200	100	85.925	ENSCJAG00000007514	SNRNP200	100	85.925	Callithrix_jacchus
ENSTNIG00000004320	snrnp200	100	85.322	ENSCAFG00020019979	SNRNP200	100	90.628	Canis_lupus_dingo
ENSTNIG00000004320	snrnp200	100	85.724	ENSCHIG00000020611	SNRNP200	100	85.724	Capra_hircus
ENSTNIG00000004320	snrnp200	100	85.992	ENSTSYG00000010467	SNRNP200	100	85.992	Carlito_syrichta
ENSTNIG00000004320	snrnp200	99	85.233	ENSCAPG00000017234	SNRNP200	99	85.233	Cavia_aperea
ENSTNIG00000004320	snrnp200	100	85.724	ENSCPOG00000006776	SNRNP200	100	85.724	Cavia_porcellus
ENSTNIG00000004320	snrnp200	100	85.925	ENSCCAG00000033962	SNRNP200	100	85.925	Cebus_capucinus
ENSTNIG00000004320	snrnp200	100	85.925	ENSCATG00000015790	SNRNP200	100	85.925	Cercocebus_atys
ENSTNIG00000004320	snrnp200	100	85.724	ENSCLAG00000004116	SNRNP200	100	85.724	Chinchilla_lanigera
ENSTNIG00000004320	snrnp200	100	85.925	ENSCSAG00000017369	SNRNP200	100	85.925	Chlorocebus_sabaeus
ENSTNIG00000004320	snrnp200	69	92.913	ENSCHOG00000012981	-	55	92.913	Choloepus_hoffmanni
ENSTNIG00000004320	snrnp200	100	79.121	ENSCPBG00000022571	SNRNP200	99	87.755	Chrysemys_picta_bellii
ENSTNIG00000004320	snrnp200	98	71.743	ENSCING00000005082	-	99	71.877	Ciona_intestinalis
ENSTNIG00000004320	snrnp200	93	87.481	ENSCANG00000033932	SNRNP200	98	87.481	Colobus_angolensis_palliatus
ENSTNIG00000004320	snrnp200	100	85.858	ENSCGRG00001022610	Snrnp200	100	85.858	Cricetulus_griseus_chok1gshd
ENSTNIG00000004320	snrnp200	100	85.456	ENSCGRG00000016472	Snrnp200	100	85.456	Cricetulus_griseus_crigri
ENSTNIG00000004320	snrnp200	100	83.216	ENSCSEG00000016399	snrnp200	100	90.275	Cynoglossus_semilaevis
ENSTNIG00000004320	snrnp200	100	82.247	ENSCVAG00000017631	snrnp200	99	82.247	Cyprinodon_variegatus
ENSTNIG00000004320	snrnp200	100	81.720	ENSDARG00000077536	snrnp200	99	89.001	Danio_rerio
ENSTNIG00000004320	snrnp200	100	84.249	ENSDNOG00000011227	SNRNP200	100	84.249	Dasypus_novemcinctus
ENSTNIG00000004320	snrnp200	100	86.856	ENSDORG00000005861	Snrnp200	100	86.856	Dipodomys_ordii
ENSTNIG00000004320	snrnp200	100	65.225	FBgn0263599	l(3)72Ab	99	70.694	Drosophila_melanogaster
ENSTNIG00000004320	snrnp200	92	84.107	ENSETEG00000000162	SNRNP200	74	84.107	Echinops_telfairi
ENSTNIG00000004320	snrnp200	78	79.696	ENSEBUG00000016524	snrnp200	95	79.696	Eptatretus_burgeri
ENSTNIG00000004320	snrnp200	98	84.477	ENSEASG00005001884	SNRNP200	100	84.344	Equus_asinus_asinus
ENSTNIG00000004320	snrnp200	99	89.365	ENSECAG00000019675	SNRNP200	99	89.365	Equus_caballus
ENSTNIG00000004320	snrnp200	90	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSTNIG00000004320	snrnp200	99	83.169	ENSELUG00000018948	snrnp200	99	90.416	Esox_lucius
ENSTNIG00000004320	snrnp200	100	85.992	ENSFCAG00000010699	SNRNP200	100	85.992	Felis_catus
ENSTNIG00000004320	snrnp200	94	81.205	ENSFALG00000001368	-	95	81.205	Ficedula_albicollis
ENSTNIG00000004320	snrnp200	100	85.724	ENSFDAG00000004683	SNRNP200	100	85.724	Fukomys_damarensis
ENSTNIG00000004320	snrnp200	100	81.946	ENSFHEG00000003786	snrnp200	99	88.844	Fundulus_heteroclitus
ENSTNIG00000004320	snrnp200	100	82.268	ENSGMOG00000004881	snrnp200	99	89.283	Gadus_morhua
ENSTNIG00000004320	snrnp200	100	82.134	ENSGAFG00000010807	snrnp200	99	82.134	Gambusia_affinis
ENSTNIG00000004320	snrnp200	100	83.955	ENSGACG00000011474	snrnp200	99	89.803	Gasterosteus_aculeatus
ENSTNIG00000004320	snrnp200	100	82.505	ENSGAGG00000016069	SNRNP200	98	98.387	Gopherus_agassizii
ENSTNIG00000004320	snrnp200	100	85.925	ENSGGOG00000005174	SNRNP200	97	91.331	Gorilla_gorilla
ENSTNIG00000004320	snrnp200	97	80.309	ENSHBUG00000011322	snrnp200	99	88.264	Haplochromis_burtoni
ENSTNIG00000004320	snrnp200	100	85.724	ENSHGLG00000006654	SNRNP200	100	85.724	Heterocephalus_glaber_female
ENSTNIG00000004320	snrnp200	100	85.724	ENSHGLG00100018594	SNRNP200	100	85.724	Heterocephalus_glaber_male
ENSTNIG00000004320	snrnp200	100	85.992	ENSSTOG00000016351	SNRNP200	100	85.992	Ictidomys_tridecemlineatus
ENSTNIG00000004320	snrnp200	100	85.724	ENSJJAG00000023659	Snrnp200	100	85.724	Jaculus_jaculus
ENSTNIG00000004320	snrnp200	100	82.240	ENSKMAG00000003665	snrnp200	99	82.240	Kryptolebias_marmoratus
ENSTNIG00000004320	snrnp200	100	84.198	ENSLBEG00000021585	snrnp200	99	91.482	Labrus_bergylta
ENSTNIG00000004320	snrnp200	81	90.173	ENSLACG00000000226	SNRNP200	99	90.173	Latimeria_chalumnae
ENSTNIG00000004320	snrnp200	100	82.056	ENSLOCG00000015198	snrnp200	99	89.008	Lepisosteus_oculatus
ENSTNIG00000004320	snrnp200	100	85.590	ENSLAFG00000015626	SNRNP200	100	85.590	Loxodonta_africana
ENSTNIG00000004320	snrnp200	98	88.073	ENSMFAG00000040174	SNRNP200	98	91.331	Macaca_fascicularis
ENSTNIG00000004320	snrnp200	100	85.925	ENSMMUG00000023261	SNRNP200	100	85.925	Macaca_mulatta
ENSTNIG00000004320	snrnp200	98	88.073	ENSMNEG00000032398	SNRNP200	100	88.073	Macaca_nemestrina
ENSTNIG00000004320	snrnp200	100	85.925	ENSMLEG00000019083	SNRNP200	98	91.331	Mandrillus_leucophaeus
ENSTNIG00000004320	snrnp200	100	84.299	ENSMAMG00000007851	snrnp200	99	91.220	Mastacembelus_armatus
ENSTNIG00000004320	snrnp200	97	80.309	ENSMZEG00005010787	snrnp200	99	88.264	Maylandia_zebra
ENSTNIG00000004320	snrnp200	97	78.744	ENSMGAG00000001831	SNRNP200	99	85.573	Meleagris_gallopavo
ENSTNIG00000004320	snrnp200	100	85.925	ENSMAUG00000011825	Snrnp200	100	85.925	Mesocricetus_auratus
ENSTNIG00000004320	snrnp200	100	85.992	ENSMICG00000004710	SNRNP200	100	85.992	Microcebus_murinus
ENSTNIG00000004320	snrnp200	100	84.019	ENSMOCG00000011814	Snrnp200	100	84.396	Microtus_ochrogaster
ENSTNIG00000004320	snrnp200	99	82.880	ENSMMOG00000014167	snrnp200	99	91.549	Mola_mola
ENSTNIG00000004320	snrnp200	100	86.059	ENSMODG00000008475	SNRNP200	100	86.059	Monodelphis_domestica
ENSTNIG00000004320	snrnp200	99	84.568	ENSMALG00000001973	snrnp200	99	91.818	Monopterus_albus
ENSTNIG00000004320	snrnp200	100	85.791	MGP_CAROLIEiJ_G0024250	Snrnp200	100	85.791	Mus_caroli
ENSTNIG00000004320	snrnp200	100	85.791	ENSMUSG00000003660	Snrnp200	100	85.791	Mus_musculus
ENSTNIG00000004320	snrnp200	100	85.791	MGP_PahariEiJ_G0025695	Snrnp200	100	85.791	Mus_pahari
ENSTNIG00000004320	snrnp200	100	85.791	MGP_SPRETEiJ_G0025170	Snrnp200	100	89.032	Mus_spretus
ENSTNIG00000004320	snrnp200	100	85.925	ENSMPUG00000008949	SNRNP200	100	85.925	Mustela_putorius_furo
ENSTNIG00000004320	snrnp200	100	82.775	ENSMLUG00000027511	-	100	82.775	Myotis_lucifugus
ENSTNIG00000004320	snrnp200	100	85.485	ENSMLUG00000010493	SNRNP200	100	85.485	Myotis_lucifugus
ENSTNIG00000004320	snrnp200	100	85.925	ENSNGAG00000021993	Snrnp200	100	85.925	Nannospalax_galili
ENSTNIG00000004320	snrnp200	91	84.366	ENSNBRG00000017960	snrnp200	98	94.449	Neolamprologus_brichardi
ENSTNIG00000004320	snrnp200	100	80.557	ENSNLEG00000000025	SNRNP200	100	80.557	Nomascus_leucogenys
ENSTNIG00000004320	snrnp200	96	94.845	ENSMEUG00000010532	SNRNP200	79	92.381	Notamacropus_eugenii
ENSTNIG00000004320	snrnp200	96	83.994	ENSOPRG00000015464	SNRNP200	96	84.017	Ochotona_princeps
ENSTNIG00000004320	snrnp200	100	85.657	ENSODEG00000008366	SNRNP200	100	85.657	Octodon_degus
ENSTNIG00000004320	snrnp200	99	84.240	ENSONIG00000010714	snrnp200	99	91.348	Oreochromis_niloticus
ENSTNIG00000004320	snrnp200	100	85.925	ENSOCUG00000009864	SNRNP200	100	85.925	Oryctolagus_cuniculus
ENSTNIG00000004320	snrnp200	100	83.544	ENSORLG00000012286	snrnp200	100	90.476	Oryzias_latipes
ENSTNIG00000004320	snrnp200	100	83.497	ENSORLG00020004648	snrnp200	100	90.342	Oryzias_latipes_hni
ENSTNIG00000004320	snrnp200	100	83.544	ENSORLG00015019114	snrnp200	100	93.543	Oryzias_latipes_hsok
ENSTNIG00000004320	snrnp200	99	83.771	ENSOMEG00000011834	snrnp200	99	90.744	Oryzias_melastigma
ENSTNIG00000004320	snrnp200	100	85.992	ENSOGAG00000006879	SNRNP200	100	85.992	Otolemur_garnettii
ENSTNIG00000004320	snrnp200	100	85.332	ENSOARG00000013949	SNRNP200	100	85.332	Ovis_aries
ENSTNIG00000004320	snrnp200	100	85.925	ENSPPAG00000041559	SNRNP200	100	85.925	Pan_paniscus
ENSTNIG00000004320	snrnp200	100	85.992	ENSPPRG00000004435	SNRNP200	100	85.992	Panthera_pardus
ENSTNIG00000004320	snrnp200	100	79.305	ENSPTIG00000006380	SNRNP200	100	85.992	Panthera_tigris_altaica
ENSTNIG00000004320	snrnp200	100	85.925	ENSPTRG00000012230	SNRNP200	100	85.925	Pan_troglodytes
ENSTNIG00000004320	snrnp200	98	88.073	ENSPANG00000006017	SNRNP200	100	88.073	Papio_anubis
ENSTNIG00000004320	snrnp200	100	82.850	ENSPKIG00000014762	snrnp200	99	89.678	Paramormyrops_kingsleyae
ENSTNIG00000004320	snrnp200	100	78.188	ENSPSIG00000008580	SNRNP200	100	84.729	Pelodiscus_sinensis
ENSTNIG00000004320	snrnp200	100	85.925	ENSPCIG00000023050	SNRNP200	100	85.925	Phascolarctos_cinereus
ENSTNIG00000004320	snrnp200	100	83.879	ENSPFOG00000015110	snrnp200	99	91.354	Poecilia_formosa
ENSTNIG00000004320	snrnp200	97	81.898	ENSPLAG00000006711	snrnp200	99	91.250	Poecilia_latipinna
ENSTNIG00000004320	snrnp200	97	81.788	ENSPMEG00000021166	snrnp200	99	91.181	Poecilia_mexicana
ENSTNIG00000004320	snrnp200	100	83.871	ENSPREG00000008875	snrnp200	99	91.482	Poecilia_reticulata
ENSTNIG00000004320	snrnp200	100	85.925	ENSPPYG00000012068	SNRNP200	100	85.925	Pongo_abelii
ENSTNIG00000004320	snrnp200	91	94.872	ENSPCAG00000008536	SNRNP200	84	97.872	Procavia_capensis
ENSTNIG00000004320	snrnp200	100	85.925	ENSPCOG00000024608	SNRNP200	100	85.925	Propithecus_coquereli
ENSTNIG00000004320	snrnp200	95	91.212	ENSPVAG00000005860	SNRNP200	92	91.212	Pteropus_vampyrus
ENSTNIG00000004320	snrnp200	100	80.807	ENSPNYG00000017476	snrnp200	99	80.807	Pundamilia_nyererei
ENSTNIG00000004320	snrnp200	100	78.806	ENSPNAG00000010998	snrnp200	99	83.001	Pygocentrus_nattereri
ENSTNIG00000004320	snrnp200	100	85.925	ENSRNOG00000012157	Snrnp200	100	85.925	Rattus_norvegicus
ENSTNIG00000004320	snrnp200	100	85.925	ENSRBIG00000044690	-	100	85.925	Rhinopithecus_bieti
ENSTNIG00000004320	snrnp200	100	85.925	ENSRROG00000037952	-	100	85.925	Rhinopithecus_roxellana
ENSTNIG00000004320	snrnp200	100	85.925	ENSSBOG00000035471	SNRNP200	96	91.331	Saimiri_boliviensis_boliviensis
ENSTNIG00000004320	snrnp200	97	85.453	ENSSHAG00000000758	SNRNP200	99	85.431	Sarcophilus_harrisii
ENSTNIG00000004320	snrnp200	99	83.075	ENSSFOG00015018826	snrnp200	99	89.946	Scleropages_formosus
ENSTNIG00000004320	snrnp200	99	84.287	ENSSMAG00000005463	snrnp200	99	91.751	Scophthalmus_maximus
ENSTNIG00000004320	snrnp200	100	85.040	ENSSDUG00000021410	snrnp200	99	85.040	Seriola_dumerili
ENSTNIG00000004320	snrnp200	100	84.853	ENSSLDG00000010884	snrnp200	99	84.853	Seriola_lalandi_dorsalis
ENSTNIG00000004320	snrnp200	95	89.641	ENSSARG00000010728	SNRNP200	92	89.641	Sorex_araneus
ENSTNIG00000004320	snrnp200	100	79.533	ENSSPUG00000003726	-	100	86.260	Sphenodon_punctatus
ENSTNIG00000004320	snrnp200	100	85.040	ENSSPAG00000001842	snrnp200	99	85.040	Stegastes_partitus
ENSTNIG00000004320	snrnp200	100	85.925	ENSSSCG00000008127	SNRNP200	100	85.925	Sus_scrofa
ENSTNIG00000004320	snrnp200	95	73.133	ENSTGUG00000014475	-	100	77.276	Taeniopygia_guttata
ENSTNIG00000004320	snrnp200	100	86.489	ENSTRUG00000001307	snrnp200	99	86.769	Takifugu_rubripes
ENSTNIG00000004320	snrnp200	77	92.958	ENSTBEG00000003329	-	64	92.958	Tupaia_belangeri
ENSTNIG00000004320	snrnp200	100	86.117	ENSTTRG00000004983	SNRNP200	100	86.117	Tursiops_truncatus
ENSTNIG00000004320	snrnp200	67	82.806	ENSUAMG00000008395	-	95	82.806	Ursus_americanus
ENSTNIG00000004320	snrnp200	100	85.992	ENSUMAG00000012385	SNRNP200	100	85.992	Ursus_maritimus
ENSTNIG00000004320	snrnp200	86	92.241	ENSVPAG00000006434	SNRNP200	66	92.241	Vicugna_pacos
ENSTNIG00000004320	snrnp200	100	85.705	ENSVVUG00000026247	SNRNP200	100	85.705	Vulpes_vulpes
ENSTNIG00000004320	snrnp200	100	78.815	ENSXETG00000001243	snrnp200	100	85.255	Xenopus_tropicalis
ENSTNIG00000004320	snrnp200	97	82.416	ENSXMAG00000002058	snrnp200	98	91.319	Xiphophorus_maculatus