EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000004453 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 6259 bases
Position: chr19:533956-540214
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000007092	Upf2	PF04050.14	5.7e-32	1	1
ENSTNIP00000007092	MIF4G	PF02854.19	9.8e-80	1	3
ENSTNIP00000007092	MIF4G	PF02854.19	9.8e-80	2	3
ENSTNIP00000007092	MIF4G	PF02854.19	9.8e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000007249	UPF2-201	3717	-	ENSTNIP00000007092	1238 (aa)	-	H3CFR5

Gene Model

Click here to download ENSTNIG00000004453's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000004453's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000004453	UPF2	100	79.844	ENSG00000151461	UPF2	100	79.953	Homo_sapiens
ENSTNIG00000004453	UPF2	78	87.438	ENSAPOG00000015837	UPF2	100	84.820	Acanthochromis_polyacanthus
ENSTNIG00000004453	UPF2	99	89.750	ENSACIG00000018078	UPF2	100	90.219	Amphilophus_citrinellus
ENSTNIG00000004453	UPF2	100	89.453	ENSAOCG00000016766	UPF2	100	89.766	Amphiprion_ocellaris
ENSTNIG00000004453	UPF2	100	89.453	ENSAPEG00000019084	UPF2	100	89.766	Amphiprion_percula
ENSTNIG00000004453	UPF2	100	90.156	ENSATEG00000021677	UPF2	99	90.625	Anabas_testudineus
ENSTNIG00000004453	UPF2	100	77.761	ENSAPLG00000010287	UPF2	100	77.350	Anas_platyrhynchos
ENSTNIG00000004453	UPF2	97	74.679	ENSANAG00000028451	UPF2	99	75.139	Aotus_nancymaae
ENSTNIG00000004453	UPF2	100	89.688	ENSACLG00000012696	UPF2	100	89.844	Astatotilapia_calliptera
ENSTNIG00000004453	UPF2	99	82.683	ENSAMXG00000013700	UPF2	99	84.243	Astyanax_mexicanus
ENSTNIG00000004453	UPF2	100	79.439	ENSBTAG00000000288	UPF2	100	79.860	Bos_taurus
ENSTNIG00000004453	UPF2	100	79.907	ENSCJAG00000020685	UPF2	100	80.016	Callithrix_jacchus
ENSTNIG00000004453	UPF2	94	80.703	ENSCAFG00020005882	UPF2	100	84.729	Canis_lupus_dingo
ENSTNIG00000004453	UPF2	100	79.361	ENSCHIG00000020359	UPF2	100	79.782	Capra_hircus
ENSTNIG00000004453	UPF2	100	79.907	ENSTSYG00000000935	UPF2	97	85.475	Carlito_syrichta
ENSTNIG00000004453	UPF2	94	73.657	ENSCAPG00000016658	UPF2	99	71.510	Cavia_aperea
ENSTNIG00000004453	UPF2	99	77.786	ENSCPOG00000008809	UPF2	100	77.978	Cavia_porcellus
ENSTNIG00000004453	UPF2	100	73.676	ENSCCAG00000035991	UPF2	100	73.795	Cebus_capucinus
ENSTNIG00000004453	UPF2	100	80.000	ENSCATG00000032679	UPF2	100	80.109	Cercocebus_atys
ENSTNIG00000004453	UPF2	100	79.579	ENSCLAG00000011434	UPF2	100	79.922	Chinchilla_lanigera
ENSTNIG00000004453	UPF2	100	80.000	ENSCSAG00000013372	UPF2	100	80.109	Chlorocebus_sabaeus
ENSTNIG00000004453	UPF2	79	89.135	ENSCHOG00000000422	UPF2	85	89.135	Choloepus_hoffmanni
ENSTNIG00000004453	UPF2	99	80.599	ENSCPBG00000027823	UPF2	100	80.787	Chrysemys_picta_bellii
ENSTNIG00000004453	UPF2	81	48.188	ENSCSAVG00000007772	-	99	48.780	Ciona_savignyi
ENSTNIG00000004453	UPF2	99	75.521	ENSCANG00000040396	UPF2	100	75.598	Colobus_angolensis_palliatus
ENSTNIG00000004453	UPF2	94	83.959	ENSCGRG00001019347	Upf2	100	79.782	Cricetulus_griseus_chok1gshd
ENSTNIG00000004453	UPF2	94	83.959	ENSCGRG00000017993	Upf2	100	79.782	Cricetulus_griseus_crigri
ENSTNIG00000004453	UPF2	99	81.406	ENSCSEG00000003520	UPF2	99	80.760	Cynoglossus_semilaevis
ENSTNIG00000004453	UPF2	99	88.583	ENSCVAG00000006167	UPF2	100	88.110	Cyprinodon_variegatus
ENSTNIG00000004453	UPF2	100	79.673	ENSDNOG00000018160	UPF2	100	80.016	Dasypus_novemcinctus
ENSTNIG00000004453	UPF2	100	79.283	ENSDORG00000002478	Upf2	100	79.627	Dipodomys_ordii
ENSTNIG00000004453	UPF2	72	92.647	ENSETEG00000011583	-	72	92.647	Echinops_telfairi
ENSTNIG00000004453	UPF2	66	71.429	ENSEBUG00000012448	-	86	71.429	Eptatretus_burgeri
ENSTNIG00000004453	UPF2	100	79.891	ENSEASG00005019274	UPF2	100	80.156	Equus_asinus_asinus
ENSTNIG00000004453	UPF2	100	79.891	ENSECAG00000017022	UPF2	100	80.156	Equus_caballus
ENSTNIG00000004453	UPF2	81	72.360	ENSEEUG00000007819	UPF2	77	72.534	Erinaceus_europaeus
ENSTNIG00000004453	UPF2	99	85.514	ENSELUG00000012014	UPF2	100	85.981	Esox_lucius
ENSTNIG00000004453	UPF2	94	85.326	ENSFCAG00000005785	UPF2	100	80.171	Felis_catus
ENSTNIG00000004453	UPF2	100	79.501	ENSFDAG00000014348	UPF2	100	79.891	Fukomys_damarensis
ENSTNIG00000004453	UPF2	99	88.416	ENSFHEG00000009826	UPF2	100	88.337	Fundulus_heteroclitus
ENSTNIG00000004453	UPF2	100	88.047	ENSGAFG00000020867	UPF2	100	87.812	Gambusia_affinis
ENSTNIG00000004453	UPF2	100	79.517	ENSGAGG00000002700	UPF2	100	79.471	Gopherus_agassizii
ENSTNIG00000004453	UPF2	100	79.844	ENSGGOG00000001479	UPF2	100	79.953	Gorilla_gorilla
ENSTNIG00000004453	UPF2	100	89.609	ENSHBUG00000004249	UPF2	100	90.219	Haplochromis_burtoni
ENSTNIG00000004453	UPF2	99	70.882	ENSHGLG00000003822	-	99	71.272	Heterocephalus_glaber_female
ENSTNIG00000004453	UPF2	100	79.345	ENSHGLG00000015176	-	100	79.196	Heterocephalus_glaber_female
ENSTNIG00000004453	UPF2	90	83.808	ENSHGLG00100010036	UPF2	100	78.031	Heterocephalus_glaber_male
ENSTNIG00000004453	UPF2	100	86.693	ENSHCOG00000004025	UPF2	99	86.693	Hippocampus_comes
ENSTNIG00000004453	UPF2	100	82.335	ENSIPUG00000015524	UPF2	100	83.502	Ictalurus_punctatus
ENSTNIG00000004453	UPF2	100	79.595	ENSSTOG00000013075	UPF2	100	79.782	Ictidomys_tridecemlineatus
ENSTNIG00000004453	UPF2	94	83.191	ENSJJAG00000004913	Upf2	100	79.361	Jaculus_jaculus
ENSTNIG00000004453	UPF2	99	87.953	ENSKMAG00000001071	UPF2	100	88.819	Kryptolebias_marmoratus
ENSTNIG00000004453	UPF2	80	91.459	ENSLBEG00000000728	-	98	85.234	Labrus_bergylta
ENSTNIG00000004453	UPF2	95	95.477	ENSLBEG00000016394	-	99	89.531	Labrus_bergylta
ENSTNIG00000004453	UPF2	94	78.015	ENSLACG00000015945	UPF2	100	74.591	Latimeria_chalumnae
ENSTNIG00000004453	UPF2	100	79.922	ENSMFAG00000043865	UPF2	100	80.031	Macaca_fascicularis
ENSTNIG00000004453	UPF2	100	79.922	ENSMMUG00000008241	UPF2	100	80.031	Macaca_mulatta
ENSTNIG00000004453	UPF2	79	80.957	ENSMNEG00000008062	UPF2	99	81.055	Macaca_nemestrina
ENSTNIG00000004453	UPF2	99	78.207	ENSMLEG00000036120	UPF2	100	78.395	Mandrillus_leucophaeus
ENSTNIG00000004453	UPF2	100	89.679	ENSMAMG00000018276	UPF2	100	89.679	Mastacembelus_armatus
ENSTNIG00000004453	UPF2	100	89.688	ENSMZEG00005021595	UPF2	100	89.844	Maylandia_zebra
ENSTNIG00000004453	UPF2	94	81.570	ENSMAUG00000016512	Upf2	100	77.683	Mesocricetus_auratus
ENSTNIG00000004453	UPF2	99	75.214	ENSMICG00000001716	UPF2	99	84.729	Microcebus_murinus
ENSTNIG00000004453	UPF2	100	79.345	ENSMOCG00000008263	Upf2	100	79.611	Microtus_ochrogaster
ENSTNIG00000004453	UPF2	94	89.983	ENSMMOG00000006528	UPF2	100	86.620	Mola_mola
ENSTNIG00000004453	UPF2	99	87.872	ENSMALG00000002663	UPF2	100	87.793	Monopterus_albus
ENSTNIG00000004453	UPF2	100	79.206	MGP_CAROLIEiJ_G0023157	Upf2	99	83.983	Mus_caroli
ENSTNIG00000004453	UPF2	100	79.283	ENSMUSG00000043241	Upf2	99	81.903	Mus_musculus
ENSTNIG00000004453	UPF2	95	83.731	MGP_PahariEiJ_G0019217	Upf2	100	81.903	Mus_pahari
ENSTNIG00000004453	UPF2	100	79.517	MGP_SPRETEiJ_G0024075	Upf2	100	81.903	Mus_spretus
ENSTNIG00000004453	UPF2	99	78.738	ENSMLUG00000000228	UPF2	100	79.193	Myotis_lucifugus
ENSTNIG00000004453	UPF2	100	89.766	ENSNBRG00000013629	UPF2	100	90.234	Neolamprologus_brichardi
ENSTNIG00000004453	UPF2	100	79.922	ENSNLEG00000012058	UPF2	100	80.031	Nomascus_leucogenys
ENSTNIG00000004453	UPF2	75	93.662	ENSOPRG00000006801	-	81	93.662	Ochotona_princeps
ENSTNIG00000004453	UPF2	100	79.082	ENSODEG00000001290	UPF2	100	79.316	Octodon_degus
ENSTNIG00000004453	UPF2	100	89.453	ENSONIG00000017991	UPF2	100	89.922	Oreochromis_niloticus
ENSTNIG00000004453	UPF2	99	79.485	ENSOCUG00000006230	UPF2	100	79.829	Oryctolagus_cuniculus
ENSTNIG00000004453	UPF2	100	87.715	ENSORLG00000017189	UPF2	100	87.872	Oryzias_latipes
ENSTNIG00000004453	UPF2	100	87.715	ENSORLG00020005969	UPF2	100	87.793	Oryzias_latipes_hni
ENSTNIG00000004453	UPF2	100	87.715	ENSORLG00015005713	UPF2	100	87.872	Oryzias_latipes_hsok
ENSTNIG00000004453	UPF2	99	84.013	ENSOMEG00000023420	UPF2	98	84.326	Oryzias_melastigma
ENSTNIG00000004453	UPF2	100	79.238	ENSOARG00000014587	UPF2	100	79.658	Ovis_aries
ENSTNIG00000004453	UPF2	99	77.666	ENSPPAG00000037953	UPF2	100	77.778	Pan_paniscus
ENSTNIG00000004453	UPF2	100	79.844	ENSPTRG00000002291	UPF2	100	79.953	Pan_troglodytes
ENSTNIG00000004453	UPF2	100	80.000	ENSPANG00000023399	UPF2	100	80.109	Papio_anubis
ENSTNIG00000004453	UPF2	100	83.073	ENSPKIG00000025502	UPF2	100	83.463	Paramormyrops_kingsleyae
ENSTNIG00000004453	UPF2	57	77.939	ENSPSIG00000015158	UPF2	95	77.939	Pelodiscus_sinensis
ENSTNIG00000004453	UPF2	99	85.893	ENSPMGG00000005259	UPF2	100	85.625	Periophthalmus_magnuspinnatus
ENSTNIG00000004453	UPF2	92	69.467	ENSPEMG00000015731	Upf2	99	69.540	Peromyscus_maniculatus_bairdii
ENSTNIG00000004453	UPF2	100	88.438	ENSPFOG00000017118	UPF2	100	88.203	Poecilia_formosa
ENSTNIG00000004453	UPF2	100	88.516	ENSPLAG00000005094	UPF2	100	88.281	Poecilia_latipinna
ENSTNIG00000004453	UPF2	100	88.516	ENSPMEG00000017009	UPF2	100	88.281	Poecilia_mexicana
ENSTNIG00000004453	UPF2	99	87.089	ENSPREG00000021880	UPF2	100	87.089	Poecilia_reticulata
ENSTNIG00000004453	UPF2	68	83.943	ENSPPYG00000002089	-	100	84.061	Pongo_abelii
ENSTNIG00000004453	UPF2	89	74.727	ENSPCAG00000000684	UPF2	100	67.368	Procavia_capensis
ENSTNIG00000004453	UPF2	93	85.311	ENSPCOG00000021656	UPF2	100	77.804	Propithecus_coquereli
ENSTNIG00000004453	UPF2	100	73.074	ENSPVAG00000017286	UPF2	100	73.427	Pteropus_vampyrus
ENSTNIG00000004453	UPF2	99	87.246	ENSPNYG00000017096	UPF2	100	87.715	Pundamilia_nyererei
ENSTNIG00000004453	UPF2	94	79.337	ENSRNOG00000023593	Upf2	100	94.444	Rattus_norvegicus
ENSTNIG00000004453	UPF2	99	78.767	ENSRBIG00000037780	UPF2	100	79.128	Rhinopithecus_bieti
ENSTNIG00000004453	UPF2	100	80.000	ENSRROG00000043547	UPF2	100	80.109	Rhinopithecus_roxellana
ENSTNIG00000004453	UPF2	100	79.907	ENSSBOG00000020012	UPF2	100	80.016	Saimiri_boliviensis_boliviensis
ENSTNIG00000004453	UPF2	97	86.805	ENSSMAG00000007637	UPF2	100	85.891	Scophthalmus_maximus
ENSTNIG00000004453	UPF2	100	87.500	ENSSDUG00000017244	UPF2	99	89.844	Seriola_dumerili
ENSTNIG00000004453	UPF2	78	88.229	ENSSLDG00000016866	UPF2	100	87.559	Seriola_lalandi_dorsalis
ENSTNIG00000004453	UPF2	100	78.660	ENSSARG00000008615	UPF2	100	78.927	Sorex_araneus
ENSTNIG00000004453	UPF2	94	79.881	ENSSPUG00000014544	UPF2	99	77.449	Sphenodon_punctatus
ENSTNIG00000004453	UPF2	71	83.504	ENSSSCG00000011117	-	99	83.618	Sus_scrofa
ENSTNIG00000004453	UPF2	100	92.801	ENSTRUG00000007519	UPF2	99	92.879	Takifugu_rubripes
ENSTNIG00000004453	UPF2	93	72.003	ENSTBEG00000012679	UPF2	93	72.469	Tupaia_belangeri
ENSTNIG00000004453	UPF2	100	79.501	ENSTTRG00000016388	UPF2	100	79.611	Tursiops_truncatus
ENSTNIG00000004453	UPF2	82	96.774	ENSVPAG00000006763	UPF2	86	96.774	Vicugna_pacos
ENSTNIG00000004453	UPF2	100	78.705	ENSXETG00000033103	UPF2	100	78.555	Xenopus_tropicalis
ENSTNIG00000004453	UPF2	99	88.419	ENSXCOG00000011604	UPF2	100	88.185	Xiphophorus_couchianus
ENSTNIG00000004453	UPF2	100	88.359	ENSXMAG00000017209	UPF2	100	88.125	Xiphophorus_maculatus