EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000004820 (Gene tree)
Gene ID: -
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 5523 bases
Position: chrUn_random:25464240-25469762
Accession: ZDB-GENE-030131-2492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000007481	KH_1	PF00013.29	1.5e-06	1	1
ENSTNIP00000007481	zf-CCHC	PF00098.23	0.0002	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000007640	-	1548	-	ENSTNIP00000007481	516 (aa)	-	H3CGV3

Gene Model

Click here to download ENSTNIG00000004820's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000004820's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000004820	sf1	77	73.747	ENSAPOG00000012341	sf1	73	70.446	Acanthochromis_polyacanthus
ENSTNIG00000004820	sf1	78	69.451	ENSAMEG00000017828	SF1	82	62.243	Ailuropoda_melanoleuca
ENSTNIG00000004820	sf1	73	77.344	ENSACIG00000016514	sf1	76	71.212	Amphilophus_citrinellus
ENSTNIG00000004820	sf1	77	73.986	ENSAOCG00000010934	sf1	73	70.818	Amphiprion_ocellaris
ENSTNIG00000004820	sf1	77	73.986	ENSAPEG00000009498	sf1	73	70.818	Amphiprion_percula
ENSTNIG00000004820	sf1	72	75.835	ENSATEG00000001894	sf1	72	71.698	Anabas_testudineus
ENSTNIG00000004820	sf1	96	56.371	ENSANAG00000022607	-	89	63.564	Aotus_nancymaae
ENSTNIG00000004820	sf1	80	70.070	ENSANAG00000026664	-	94	71.921	Aotus_nancymaae
ENSTNIG00000004820	sf1	72	78.590	ENSACLG00000007633	sf1	74	70.937	Astatotilapia_calliptera
ENSTNIG00000004820	sf1	72	75.194	ENSAMXG00000003630	sf1	65	69.524	Astyanax_mexicanus
ENSTNIG00000004820	sf1	80	70.023	ENSBTAG00000001035	SF1	84	62.615	Bos_taurus
ENSTNIG00000004820	sf1	80	69.789	ENSCJAG00000002780	SF1	84	62.799	Callithrix_jacchus
ENSTNIG00000004820	sf1	80	69.789	ENSCAFG00000014239	SF1	84	62.799	Canis_familiaris
ENSTNIG00000004820	sf1	80	69.789	ENSCAFG00020014381	SF1	84	62.799	Canis_lupus_dingo
ENSTNIG00000004820	sf1	80	69.789	ENSCHIG00000025867	SF1	97	61.878	Capra_hircus
ENSTNIG00000004820	sf1	54	78.049	ENSTSYG00000033618	SF1	85	77.003	Carlito_syrichta
ENSTNIG00000004820	sf1	77	68.932	ENSCAPG00000010762	SF1	68	72.123	Cavia_aperea
ENSTNIG00000004820	sf1	78	68.974	ENSCPOG00000012290	SF1	97	61.174	Cavia_porcellus
ENSTNIG00000004820	sf1	80	70.023	ENSCCAG00000037881	SF1	94	71.921	Cebus_capucinus
ENSTNIG00000004820	sf1	80	62.731	ENSCCAG00000023781	-	87	63.457	Cebus_capucinus
ENSTNIG00000004820	sf1	80	70.023	ENSCATG00000011564	SF1	92	72.265	Cercocebus_atys
ENSTNIG00000004820	sf1	80	69.789	ENSCSAG00000007258	SF1	97	61.878	Chlorocebus_sabaeus
ENSTNIG00000004820	sf1	74	63.476	ENSCHOG00000006008	SF1	69	66.223	Choloepus_hoffmanni
ENSTNIG00000004820	sf1	81	71.628	ENSCPBG00000023763	SF1	66	63.238	Chrysemys_picta_bellii
ENSTNIG00000004820	sf1	59	58.044	ENSCING00000005564	-	72	53.784	Ciona_intestinalis
ENSTNIG00000004820	sf1	82	48.164	ENSCSAVG00000009055	-	70	53.821	Ciona_savignyi
ENSTNIG00000004820	sf1	80	69.789	ENSCANG00000042201	SF1	92	72.265	Colobus_angolensis_palliatus
ENSTNIG00000004820	sf1	80	70.258	ENSCGRG00001003677	Sf1	84	62.799	Cricetulus_griseus_chok1gshd
ENSTNIG00000004820	sf1	77	69.660	ENSCGRG00000001708	Sf1	97	61.049	Cricetulus_griseus_crigri
ENSTNIG00000004820	sf1	77	74.818	ENSCSEG00000014375	sf1	70	71.293	Cynoglossus_semilaevis
ENSTNIG00000004820	sf1	72	79.211	ENSCVAG00000001670	sf1	78	72.179	Cyprinodon_variegatus
ENSTNIG00000004820	sf1	76	75.735	ENSDARG00000008188	sf1	68	76.961	Danio_rerio
ENSTNIG00000004820	sf1	80	70.023	ENSDNOG00000001282	SF1	97	62.063	Dasypus_novemcinctus
ENSTNIG00000004820	sf1	80	69.789	ENSDORG00000016334	Sf1	84	62.799	Dipodomys_ordii
ENSTNIG00000004820	sf1	77	62.260	ENSETEG00000012830	SF1	73	55.660	Echinops_telfairi
ENSTNIG00000004820	sf1	80	69.321	ENSEASG00005018272	SF1	97	61.510	Equus_asinus_asinus
ENSTNIG00000004820	sf1	80	69.555	ENSECAG00000024544	SF1	97	61.694	Equus_caballus
ENSTNIG00000004820	sf1	69	68.883	ENSEEUG00000001058	SF1	87	72.365	Erinaceus_europaeus
ENSTNIG00000004820	sf1	83	70.288	ENSELUG00000013225	sf1	50	74.495	Esox_lucius
ENSTNIG00000004820	sf1	80	69.789	ENSFCAG00000012231	SF1	84	62.799	Felis_catus
ENSTNIG00000004820	sf1	77	69.417	ENSFDAG00000009833	SF1	68	71.355	Fukomys_damarensis
ENSTNIG00000004820	sf1	74	74.121	ENSFHEG00000022656	sf1	73	70.709	Fundulus_heteroclitus
ENSTNIG00000004820	sf1	84	69.623	ENSGMOG00000007469	sf1	71	71.820	Gadus_morhua
ENSTNIG00000004820	sf1	99	66.038	ENSGAFG00000019284	sf1	97	70.755	Gambusia_affinis
ENSTNIG00000004820	sf1	75	75.000	ENSGACG00000000826	sf1	67	76.413	Gasterosteus_aculeatus
ENSTNIG00000004820	sf1	81	71.395	ENSGAGG00000021691	SF1	72	63.238	Gopherus_agassizii
ENSTNIG00000004820	sf1	72	77.892	ENSHBUG00000011598	sf1	73	71.349	Haplochromis_burtoni
ENSTNIG00000004820	sf1	80	70.023	ENSHGLG00000009541	SF1	84	62.799	Heterocephalus_glaber_female
ENSTNIG00000004820	sf1	57	74.582	ENSHGLG00100008076	-	72	65.676	Heterocephalus_glaber_male
ENSTNIG00000004820	sf1	80	59.685	ENSHGLG00100008255	-	98	53.977	Heterocephalus_glaber_male
ENSTNIG00000004820	sf1	77	69.417	ENSHGLG00100013879	-	87	63.125	Heterocephalus_glaber_male
ENSTNIG00000004820	sf1	74	75.062	ENSHCOG00000011388	sf1	72	70.722	Hippocampus_comes
ENSTNIG00000004820	sf1	77	69.417	ENSSTOG00000009790	-	83	62.121	Ictidomys_tridecemlineatus
ENSTNIG00000004820	sf1	72	63.492	ENSSTOG00000024353	-	77	56.154	Ictidomys_tridecemlineatus
ENSTNIG00000004820	sf1	80	70.023	ENSJJAG00000011788	Sf1	84	62.983	Jaculus_jaculus
ENSTNIG00000004820	sf1	74	76.000	ENSKMAG00000005854	sf1	76	71.004	Kryptolebias_marmoratus
ENSTNIG00000004820	sf1	72	76.726	ENSLBEG00000019836	sf1	61	76.485	Labrus_bergylta
ENSTNIG00000004820	sf1	79	66.667	ENSLACG00000018493	SF1	85	58.333	Latimeria_chalumnae
ENSTNIG00000004820	sf1	72	75.000	ENSLOCG00000002130	sf1	76	65.217	Lepisosteus_oculatus
ENSTNIG00000004820	sf1	78	68.974	ENSLAFG00000007201	SF1	82	62.243	Loxodonta_africana
ENSTNIG00000004820	sf1	80	70.023	ENSMFAG00000033122	SF1	92	72.265	Macaca_fascicularis
ENSTNIG00000004820	sf1	80	69.789	ENSMMUG00000022606	SF1	95	71.285	Macaca_mulatta
ENSTNIG00000004820	sf1	80	70.023	ENSMNEG00000037901	SF1	92	72.265	Macaca_nemestrina
ENSTNIG00000004820	sf1	78	69.305	ENSMLEG00000040706	SF1	92	70.483	Mandrillus_leucophaeus
ENSTNIG00000004820	sf1	74	76.574	ENSMAMG00000001780	sf1	72	72.212	Mastacembelus_armatus
ENSTNIG00000004820	sf1	72	77.892	ENSMZEG00005009196	sf1	73	71.349	Maylandia_zebra
ENSTNIG00000004820	sf1	80	70.258	ENSMAUG00000014064	Sf1	84	62.983	Mesocricetus_auratus
ENSTNIG00000004820	sf1	80	70.023	ENSMICG00000001202	SF1	94	71.921	Microcebus_murinus
ENSTNIG00000004820	sf1	80	70.070	ENSMOCG00000022038	Sf1	84	63.168	Microtus_ochrogaster
ENSTNIG00000004820	sf1	72	77.632	ENSMMOG00000020474	sf1	73	71.346	Mola_mola
ENSTNIG00000004820	sf1	78	68.974	ENSMODG00000029407	SF1	84	71.285	Monodelphis_domestica
ENSTNIG00000004820	sf1	73	77.604	ENSMALG00000020521	sf1	82	71.456	Monopterus_albus
ENSTNIG00000004820	sf1	80	70.023	MGP_CAROLIEiJ_G0022607	Sf1	99	79.851	Mus_caroli
ENSTNIG00000004820	sf1	80	70.023	ENSMUSG00000024949	Sf1	99	79.851	Mus_musculus
ENSTNIG00000004820	sf1	80	70.258	MGP_PahariEiJ_G0014101	Sf1	99	79.851	Mus_pahari
ENSTNIG00000004820	sf1	80	70.023	MGP_SPRETEiJ_G0023518	Sf1	99	79.851	Mus_spretus
ENSTNIG00000004820	sf1	78	69.690	ENSMPUG00000012684	SF1	82	62.430	Mustela_putorius_furo
ENSTNIG00000004820	sf1	83	67.873	ENSMLUG00000029800	-	68	69.877	Myotis_lucifugus
ENSTNIG00000004820	sf1	78	69.451	ENSMLUG00000015217	-	82	62.617	Myotis_lucifugus
ENSTNIG00000004820	sf1	80	70.023	ENSNGAG00000005550	Sf1	84	62.983	Nannospalax_galili
ENSTNIG00000004820	sf1	72	78.329	ENSNBRG00000017606	sf1	74	69.981	Neolamprologus_brichardi
ENSTNIG00000004820	sf1	80	70.023	ENSNLEG00000005236	-	92	72.265	Nomascus_leucogenys
ENSTNIG00000004820	sf1	76	69.193	ENSMEUG00000013424	SF1	97	61.377	Notamacropus_eugenii
ENSTNIG00000004820	sf1	69	68.817	ENSOPRG00000005008	SF1	97	60.041	Ochotona_princeps
ENSTNIG00000004820	sf1	80	67.681	ENSODEG00000006102	-	81	61.039	Octodon_degus
ENSTNIG00000004820	sf1	72	77.635	ENSONIG00000015728	sf1	73	71.165	Oreochromis_niloticus
ENSTNIG00000004820	sf1	62	67.267	ENSOANG00000002909	SF1	65	73.978	Ornithorhynchus_anatinus
ENSTNIG00000004820	sf1	78	68.974	ENSOCUG00000026486	SF1	83	62.243	Oryctolagus_cuniculus
ENSTNIG00000004820	sf1	74	75.561	ENSORLG00000011853	sf1	73	71.756	Oryzias_latipes
ENSTNIG00000004820	sf1	76	74.634	ENSORLG00020011834	sf1	74	71.107	Oryzias_latipes_hni
ENSTNIG00000004820	sf1	72	76.215	ENSORLG00015012855	sf1	73	72.106	Oryzias_latipes_hsok
ENSTNIG00000004820	sf1	74	74.500	ENSOMEG00000005210	sf1	74	69.888	Oryzias_melastigma
ENSTNIG00000004820	sf1	80	69.789	ENSOGAG00000016196	SF1	84	62.799	Otolemur_garnettii
ENSTNIG00000004820	sf1	79	68.810	ENSPPAG00000002799	-	93	71.357	Pan_paniscus
ENSTNIG00000004820	sf1	78	69.305	ENSPPRG00000013566	SF1	83	62.136	Panthera_pardus
ENSTNIG00000004820	sf1	78	69.359	ENSPTIG00000016141	SF1	70	71.250	Panthera_tigris_altaica
ENSTNIG00000004820	sf1	81	70.115	ENSPTRG00000003846	SF1	93	71.921	Pan_troglodytes
ENSTNIG00000004820	sf1	80	70.023	ENSPANG00000020754	SF1	92	72.265	Papio_anubis
ENSTNIG00000004820	sf1	61	69.939	ENSPKIG00000012116	sf1	76	70.820	Paramormyrops_kingsleyae
ENSTNIG00000004820	sf1	61	74.613	ENSPSIG00000003610	SF1	79	64.128	Pelodiscus_sinensis
ENSTNIG00000004820	sf1	80	70.023	ENSPEMG00000010463	Sf1	84	62.983	Peromyscus_maniculatus_bairdii
ENSTNIG00000004820	sf1	80	70.023	ENSPCIG00000018173	SF1	84	63.100	Phascolarctos_cinereus
ENSTNIG00000004820	sf1	74	79.434	ENSPFOG00000013683	sf1	86	74.248	Poecilia_formosa
ENSTNIG00000004820	sf1	75	76.167	ENSPLAG00000018076	sf1	74	71.780	Poecilia_latipinna
ENSTNIG00000004820	sf1	72	77.062	ENSPMEG00000005726	sf1	76	71.780	Poecilia_mexicana
ENSTNIG00000004820	sf1	72	76.215	ENSPREG00000004155	sf1	72	71.591	Poecilia_reticulata
ENSTNIG00000004820	sf1	80	69.789	ENSPPYG00000003098	-	99	62.570	Pongo_abelii
ENSTNIG00000004820	sf1	78	68.585	ENSPCAG00000013631	SF1	78	60.976	Procavia_capensis
ENSTNIG00000004820	sf1	99	62.477	ENSPCOG00000027546	SF1	94	71.921	Propithecus_coquereli
ENSTNIG00000004820	sf1	78	69.544	ENSPVAG00000016938	SF1	79	61.351	Pteropus_vampyrus
ENSTNIG00000004820	sf1	72	77.892	ENSPNYG00000004673	sf1	72	72.180	Pundamilia_nyererei
ENSTNIG00000004820	sf1	72	74.611	ENSPNAG00000013072	sf1	73	68.893	Pygocentrus_nattereri
ENSTNIG00000004820	sf1	80	70.023	ENSRNOG00000021085	Sf1	88	59.556	Rattus_norvegicus
ENSTNIG00000004820	sf1	80	70.023	ENSRBIG00000042818	SF1	92	72.379	Rhinopithecus_bieti
ENSTNIG00000004820	sf1	80	68.384	ENSRROG00000045655	SF1	92	70.483	Rhinopithecus_roxellana
ENSTNIG00000004820	sf1	75	32.452	YLR116W	MSL5	68	34.493	Saccharomyces_cerevisiae
ENSTNIG00000004820	sf1	99	54.323	ENSSBOG00000022267	-	93	60.500	Saimiri_boliviensis_boliviensis
ENSTNIG00000004820	sf1	78	67.542	ENSSHAG00000006841	SF1	73	70.244	Sarcophilus_harrisii
ENSTNIG00000004820	sf1	76	71.744	ENSSFOG00015021978	sf1	72	67.433	Scleropages_formosus
ENSTNIG00000004820	sf1	78	73.903	ENSSMAG00000007549	sf1	76	69.043	Scophthalmus_maximus
ENSTNIG00000004820	sf1	74	74.372	ENSSDUG00000003903	sf1	76	71.243	Seriola_dumerili
ENSTNIG00000004820	sf1	62	82.301	ENSSLDG00000013075	sf1	74	71.243	Seriola_lalandi_dorsalis
ENSTNIG00000004820	sf1	77	64.964	ENSSARG00000008180	SF1	99	59.423	Sorex_araneus
ENSTNIG00000004820	sf1	93	62.476	ENSSPUG00000012907	SF1	63	71.979	Sphenodon_punctatus
ENSTNIG00000004820	sf1	77	74.940	ENSSPAG00000019060	sf1	73	71.375	Stegastes_partitus
ENSTNIG00000004820	sf1	80	69.789	ENSSSCG00000013021	SF1	97	61.878	Sus_scrofa
ENSTNIG00000004820	sf1	57	66.997	ENSTRUG00000022982	sf1	70	69.408	Takifugu_rubripes
ENSTNIG00000004820	sf1	53	79.433	ENSTBEG00000013133	SF1	57	64.322	Tupaia_belangeri
ENSTNIG00000004820	sf1	77	68.704	ENSTTRG00000008857	SF1	97	60.762	Tursiops_truncatus
ENSTNIG00000004820	sf1	58	72.492	ENSUAMG00000011977	SF1	76	62.836	Ursus_americanus
ENSTNIG00000004820	sf1	79	68.779	ENSUMAG00000007268	SF1	75	72.111	Ursus_maritimus
ENSTNIG00000004820	sf1	80	69.789	ENSVVUG00000028585	SF1	97	61.878	Vulpes_vulpes
ENSTNIG00000004820	sf1	90	63.636	ENSXETG00000008434	sf1	84	58.889	Xenopus_tropicalis
ENSTNIG00000004820	sf1	71	78.075	ENSXCOG00000003704	sf1	94	71.930	Xiphophorus_couchianus
ENSTNIG00000004820	sf1	72	77.121	ENSXMAG00000007822	sf1	75	72.159	Xiphophorus_maculatus