EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000005273 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat containing 6C1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 8854 bases
Position: chr3:9055234-9064087
Accession: ZDB-GENE-030131-7440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000007952	RRM_1	PF00076.22	1.7e-05	1	1
ENSTNIP00000014565	RRM_1	PF00076.22	3.1e-05	1	1
ENSTNIP00000000332	RRM_1	PF00076.22	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000001024	-	4887	-	ENSTNIP00000000332	1628 (aa)	-	H3BWH0
ENSTNIT00000014764	-	4800	-	ENSTNIP00000014565	1599 (aa)	-	H3D227
ENSTNIT00000008113	-	2934	-	ENSTNIP00000007952	977 (aa)	-	H3CI74

Gene Model

Click here to download ENSTNIG00000005273's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000005273's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000005273	tnrc6c1	93	63.541	ENSTNIG00000004178	tnrc6c2	100	51.180

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000005273	tnrc6c1	100	60.784	ENSG00000078687	TNRC6C	100	55.172	Homo_sapiens
ENSTNIG00000005273	tnrc6c1	100	79.615	ENSAPOG00000019749	tnrc6c1	98	77.732	Acanthochromis_polyacanthus
ENSTNIG00000005273	tnrc6c1	100	59.593	ENSAMEG00000013756	TNRC6C	95	51.734	Ailuropoda_melanoleuca
ENSTNIG00000005273	tnrc6c1	100	79.293	ENSACIG00000008075	tnrc6c1	99	70.338	Amphilophus_citrinellus
ENSTNIG00000005273	tnrc6c1	100	79.227	ENSAOCG00000023968	tnrc6c1	99	76.204	Amphiprion_ocellaris
ENSTNIG00000005273	tnrc6c1	100	79.324	ENSAPEG00000009020	tnrc6c1	99	76.261	Amphiprion_percula
ENSTNIG00000005273	tnrc6c1	100	61.331	ENSAPLG00000005456	TNRC6C	94	52.298	Anas_platyrhynchos
ENSTNIG00000005273	tnrc6c1	100	62.672	ENSACAG00000016198	TNRC6C	87	53.597	Anolis_carolinensis
ENSTNIG00000005273	tnrc6c1	100	60.097	ENSANAG00000021554	TNRC6C	88	51.753	Aotus_nancymaae
ENSTNIG00000005273	tnrc6c1	100	77.052	ENSACLG00000000424	tnrc6c1	99	69.540	Astatotilapia_calliptera
ENSTNIG00000005273	tnrc6c1	100	61.014	ENSBTAG00000018658	TNRC6C	95	54.271	Bos_taurus
ENSTNIG00000005273	tnrc6c1	100	60.097	ENSCJAG00000019431	TNRC6C	88	52.421	Callithrix_jacchus
ENSTNIG00000005273	tnrc6c1	100	61.214	ENSCAFG00000005224	TNRC6C	88	53.151	Canis_familiaris
ENSTNIG00000005273	tnrc6c1	100	60.756	ENSCAFG00020006661	TNRC6C	88	54.598	Canis_lupus_dingo
ENSTNIG00000005273	tnrc6c1	100	61.095	ENSCHIG00000026004	TNRC6C	95	52.924	Capra_hircus
ENSTNIG00000005273	tnrc6c1	100	61.019	ENSTSYG00000005403	TNRC6C	94	53.239	Carlito_syrichta
ENSTNIG00000005273	tnrc6c1	100	53.592	ENSCAPG00000007307	TNRC6C	93	50.360	Cavia_aperea
ENSTNIG00000005273	tnrc6c1	100	58.979	ENSCPOG00000000467	TNRC6C	99	53.879	Cavia_porcellus
ENSTNIG00000005273	tnrc6c1	100	61.128	ENSCCAG00000030524	TNRC6C	88	52.834	Cebus_capucinus
ENSTNIG00000005273	tnrc6c1	100	60.980	ENSCATG00000033135	TNRC6C	88	52.867	Cercocebus_atys
ENSTNIG00000005273	tnrc6c1	100	59.764	ENSCLAG00000011139	TNRC6C	88	54.591	Chinchilla_lanigera
ENSTNIG00000005273	tnrc6c1	100	60.882	ENSCSAG00000005167	TNRC6C	88	52.912	Chlorocebus_sabaeus
ENSTNIG00000005273	tnrc6c1	80	66.116	ENSCHOG00000000088	TNRC6C	61	66.116	Choloepus_hoffmanni
ENSTNIG00000005273	tnrc6c1	100	62.326	ENSCPBG00000027960	TNRC6C	94	55.420	Chrysemys_picta_bellii
ENSTNIG00000005273	tnrc6c1	100	61.176	ENSCANG00000041771	TNRC6C	88	53.007	Colobus_angolensis_palliatus
ENSTNIG00000005273	tnrc6c1	100	59.748	ENSCGRG00001022686	Tnrc6c	95	53.774	Cricetulus_griseus_chok1gshd
ENSTNIG00000005273	tnrc6c1	100	60.098	ENSCGRG00000018041	Tnrc6c	95	53.774	Cricetulus_griseus_crigri
ENSTNIG00000005273	tnrc6c1	100	72.850	ENSCSEG00000012744	tnrc6c1	95	70.632	Cynoglossus_semilaevis
ENSTNIG00000005273	tnrc6c1	100	69.890	ENSDARG00000076847	tnrc6c1	100	58.619	Danio_rerio
ENSTNIG00000005273	tnrc6c1	100	61.144	ENSDNOG00000003247	TNRC6C	90	52.146	Dasypus_novemcinctus
ENSTNIG00000005273	tnrc6c1	100	57.573	ENSDORG00000004558	Tnrc6c	88	51.913	Dipodomys_ordii
ENSTNIG00000005273	tnrc6c1	100	56.458	ENSETEG00000005527	TNRC6C	82	55.782	Echinops_telfairi
ENSTNIG00000005273	tnrc6c1	100	59.060	ENSEASG00005004799	TNRC6C	95	54.722	Equus_asinus_asinus
ENSTNIG00000005273	tnrc6c1	100	60.606	ENSECAG00000012486	TNRC6C	89	54.598	Equus_caballus
ENSTNIG00000005273	tnrc6c1	100	54.741	ENSEEUG00000010008	TNRC6C	90	55.206	Erinaceus_europaeus
ENSTNIG00000005273	tnrc6c1	100	60.447	ENSFCAG00000028358	TNRC6C	94	54.401	Felis_catus
ENSTNIG00000005273	tnrc6c1	100	60.000	ENSFALG00000000848	TNRC6C	81	52.234	Ficedula_albicollis
ENSTNIG00000005273	tnrc6c1	100	59.470	ENSFDAG00000010368	TNRC6C	95	54.993	Fukomys_damarensis
ENSTNIG00000005273	tnrc6c1	100	75.532	ENSFHEG00000002936	tnrc6c1	99	69.465	Fundulus_heteroclitus
ENSTNIG00000005273	tnrc6c1	100	62.414	ENSGALG00000001725	TNRC6C	99	54.077	Gallus_gallus
ENSTNIG00000005273	tnrc6c1	100	76.567	ENSGAFG00000019019	tnrc6c1	100	70.876	Gambusia_affinis
ENSTNIG00000005273	tnrc6c1	100	73.973	ENSGACG00000012320	tnrc6c1	92	71.892	Gasterosteus_aculeatus
ENSTNIG00000005273	tnrc6c1	100	62.439	ENSGAGG00000022043	TNRC6C	94	55.093	Gopherus_agassizii
ENSTNIG00000005273	tnrc6c1	100	60.784	ENSGGOG00000011304	TNRC6C	88	52.484	Gorilla_gorilla
ENSTNIG00000005273	tnrc6c1	100	77.390	ENSHBUG00000010846	tnrc6c1	100	72.667	Haplochromis_burtoni
ENSTNIG00000005273	tnrc6c1	100	59.078	ENSHGLG00000004809	TNRC6C	88	54.473	Heterocephalus_glaber_female
ENSTNIG00000005273	tnrc6c1	100	58.252	ENSHGLG00100012597	TNRC6C	88	54.206	Heterocephalus_glaber_male
ENSTNIG00000005273	tnrc6c1	100	66.602	ENSIPUG00000000818	tnrc6c1	94	59.404	Ictalurus_punctatus
ENSTNIG00000005273	tnrc6c1	100	59.863	ENSSTOG00000009101	TNRC6C	99	54.748	Ictidomys_tridecemlineatus
ENSTNIG00000005273	tnrc6c1	100	59.299	ENSJJAG00000017055	Tnrc6c	88	54.454	Jaculus_jaculus
ENSTNIG00000005273	tnrc6c1	100	77.377	ENSKMAG00000021023	tnrc6c1	100	72.117	Kryptolebias_marmoratus
ENSTNIG00000005273	tnrc6c1	87	65.000	ENSLACG00000015283	TNRC6C	77	51.079	Latimeria_chalumnae
ENSTNIG00000005273	tnrc6c1	100	65.388	ENSLOCG00000013377	tnrc6c1	93	58.413	Lepisosteus_oculatus
ENSTNIG00000005273	tnrc6c1	100	58.829	ENSLAFG00000011122	TNRC6C	95	51.363	Loxodonta_africana
ENSTNIG00000005273	tnrc6c1	100	60.980	ENSMFAG00000043943	TNRC6C	89	52.867	Macaca_fascicularis
ENSTNIG00000005273	tnrc6c1	100	60.980	ENSMMUG00000011924	TNRC6C	86	52.982	Macaca_mulatta
ENSTNIG00000005273	tnrc6c1	100	60.621	ENSMNEG00000030405	TNRC6C	89	52.797	Macaca_nemestrina
ENSTNIG00000005273	tnrc6c1	100	60.980	ENSMLEG00000033436	TNRC6C	89	52.867	Mandrillus_leucophaeus
ENSTNIG00000005273	tnrc6c1	100	78.528	ENSMAMG00000023613	tnrc6c1	100	75.138	Mastacembelus_armatus
ENSTNIG00000005273	tnrc6c1	100	78.454	ENSMZEG00005010920	tnrc6c1	99	70.962	Maylandia_zebra
ENSTNIG00000005273	tnrc6c1	93	67.537	ENSMGAG00000003906	TNRC6C	87	67.537	Meleagris_gallopavo
ENSTNIG00000005273	tnrc6c1	100	59.360	ENSMAUG00000021618	Tnrc6c	95	54.709	Mesocricetus_auratus
ENSTNIG00000005273	tnrc6c1	100	60.588	ENSMICG00000003952	TNRC6C	88	53.483	Microcebus_murinus
ENSTNIG00000005273	tnrc6c1	100	60.000	ENSMOCG00000015879	Tnrc6c	95	55.083	Microtus_ochrogaster
ENSTNIG00000005273	tnrc6c1	100	78.649	ENSMMOG00000005203	tnrc6c1	100	78.567	Mola_mola
ENSTNIG00000005273	tnrc6c1	100	59.883	ENSMODG00000001785	TNRC6C	88	54.493	Monodelphis_domestica
ENSTNIG00000005273	tnrc6c1	100	59.725	MGP_CAROLIEiJ_G0017465	Tnrc6c	95	54.440	Mus_caroli
ENSTNIG00000005273	tnrc6c1	100	59.666	ENSMUSG00000025571	Tnrc6c	95	54.618	Mus_musculus
ENSTNIG00000005273	tnrc6c1	100	59.961	MGP_PahariEiJ_G0018593	Tnrc6c	95	54.690	Mus_pahari
ENSTNIG00000005273	tnrc6c1	100	59.372	MGP_SPRETEiJ_G0018309	Tnrc6c	95	54.401	Mus_spretus
ENSTNIG00000005273	tnrc6c1	100	60.392	ENSMPUG00000013348	TNRC6C	87	52.031	Mustela_putorius_furo
ENSTNIG00000005273	tnrc6c1	100	58.631	ENSMLUG00000014431	TNRC6C	86	51.741	Myotis_lucifugus
ENSTNIG00000005273	tnrc6c1	100	58.949	ENSNGAG00000012203	Tnrc6c	91	54.298	Nannospalax_galili
ENSTNIG00000005273	tnrc6c1	100	78.858	ENSNBRG00000005344	tnrc6c1	99	72.315	Neolamprologus_brichardi
ENSTNIG00000005273	tnrc6c1	100	58.447	ENSNLEG00000000047	TNRC6C	88	51.092	Nomascus_leucogenys
ENSTNIG00000005273	tnrc6c1	89	73.262	ENSMEUG00000005104	TNRC6C	94	49.665	Notamacropus_eugenii
ENSTNIG00000005273	tnrc6c1	100	59.764	ENSODEG00000012499	TNRC6C	80	54.978	Octodon_degus
ENSTNIG00000005273	tnrc6c1	100	76.535	ENSONIG00000002210	tnrc6c1	100	75.156	Oreochromis_niloticus
ENSTNIG00000005273	tnrc6c1	100	57.267	ENSOANG00000009758	-	67	54.468	Ornithorhynchus_anatinus
ENSTNIG00000005273	tnrc6c1	63	52.762	ENSOCUG00000006122	TNRC6C	62	45.455	Oryctolagus_cuniculus
ENSTNIG00000005273	tnrc6c1	100	71.649	ENSORLG00000009837	tnrc6c1	100	78.909	Oryzias_latipes
ENSTNIG00000005273	tnrc6c1	100	74.253	ENSORLG00020016510	tnrc6c1	100	68.053	Oryzias_latipes_hni
ENSTNIG00000005273	tnrc6c1	80	63.233	ENSORLG00015000171	tnrc6c1	97	63.418	Oryzias_latipes_hsok
ENSTNIG00000005273	tnrc6c1	100	75.313	ENSOMEG00000000357	tnrc6c1	99	68.041	Oryzias_melastigma
ENSTNIG00000005273	tnrc6c1	100	59.256	ENSOGAG00000007197	TNRC6C	95	52.479	Otolemur_garnettii
ENSTNIG00000005273	tnrc6c1	93	59.023	ENSOARG00000006041	TNRC6C	87	50.222	Ovis_aries
ENSTNIG00000005273	tnrc6c1	100	60.746	ENSPPAG00000027160	TNRC6C	88	52.694	Pan_paniscus
ENSTNIG00000005273	tnrc6c1	100	60.447	ENSPPRG00000018881	TNRC6C	94	54.473	Panthera_pardus
ENSTNIG00000005273	tnrc6c1	86	53.499	ENSPTIG00000008791	TNRC6C	87	42.764	Panthera_tigris_altaica
ENSTNIG00000005273	tnrc6c1	100	60.844	ENSPTRG00000009699	TNRC6C	89	52.764	Pan_troglodytes
ENSTNIG00000005273	tnrc6c1	100	60.621	ENSPANG00000019994	TNRC6C	89	52.867	Papio_anubis
ENSTNIG00000005273	tnrc6c1	100	63.592	ENSPKIG00000005428	tnrc6c1	100	55.957	Paramormyrops_kingsleyae
ENSTNIG00000005273	tnrc6c1	100	60.555	ENSPSIG00000018069	TNRC6C	77	55.425	Pelodiscus_sinensis
ENSTNIG00000005273	tnrc6c1	93	70.199	ENSPMGG00000022911	tnrc6c1	98	76.327	Periophthalmus_magnuspinnatus
ENSTNIG00000005273	tnrc6c1	100	60.330	ENSPEMG00000009785	Tnrc6c	92	52.255	Peromyscus_maniculatus_bairdii
ENSTNIG00000005273	tnrc6c1	52	39.148	ENSPCIG00000017421	-	65	43.390	Phascolarctos_cinereus
ENSTNIG00000005273	tnrc6c1	100	76.686	ENSPFOG00000012560	tnrc6c1	99	68.085	Poecilia_formosa
ENSTNIG00000005273	tnrc6c1	100	77.410	ENSPLAG00000021055	tnrc6c1	100	71.135	Poecilia_latipinna
ENSTNIG00000005273	tnrc6c1	100	60.746	ENSPPYG00000008679	TNRC6C	86	52.809	Pongo_abelii
ENSTNIG00000005273	tnrc6c1	81	61.181	ENSPCAG00000012510	TNRC6C	67	67.048	Procavia_capensis
ENSTNIG00000005273	tnrc6c1	100	61.312	ENSPCOG00000021451	TNRC6C	80	55.338	Propithecus_coquereli
ENSTNIG00000005273	tnrc6c1	93	65.833	ENSPVAG00000002008	TNRC6C	90	65.833	Pteropus_vampyrus
ENSTNIG00000005273	tnrc6c1	100	78.357	ENSPNYG00000014477	tnrc6c1	100	72.491	Pundamilia_nyererei
ENSTNIG00000005273	tnrc6c1	100	59.764	ENSRNOG00000022395	Tnrc6c	90	54.908	Rattus_norvegicus
ENSTNIG00000005273	tnrc6c1	100	61.078	ENSRBIG00000027777	TNRC6C	88	52.937	Rhinopithecus_bieti
ENSTNIG00000005273	tnrc6c1	100	61.078	ENSRROG00000042912	TNRC6C	88	52.937	Rhinopithecus_roxellana
ENSTNIG00000005273	tnrc6c1	100	60.550	ENSSBOG00000023981	TNRC6C	88	52.991	Saimiri_boliviensis_boliviensis
ENSTNIG00000005273	tnrc6c1	93	63.598	ENSSHAG00000018330	-	100	64.021	Sarcophilus_harrisii
ENSTNIG00000005273	tnrc6c1	96	60.652	ENSSFOG00015004735	-	99	67.639	Scleropages_formosus
ENSTNIG00000005273	tnrc6c1	100	63.732	ENSSFOG00015006475	tnrc6c1	95	56.780	Scleropages_formosus
ENSTNIG00000005273	tnrc6c1	100	73.840	ENSSMAG00000012761	tnrc6c1	100	73.987	Scophthalmus_maximus
ENSTNIG00000005273	tnrc6c1	100	76.285	ENSSDUG00000002366	tnrc6c1	98	75.770	Seriola_dumerili
ENSTNIG00000005273	tnrc6c1	100	75.775	ENSSLDG00000025613	tnrc6c1	100	75.364	Seriola_lalandi_dorsalis
ENSTNIG00000005273	tnrc6c1	84	66.116	ENSSARG00000006816	TNRC6C	91	66.116	Sorex_araneus
ENSTNIG00000005273	tnrc6c1	100	61.127	ENSSPUG00000007341	TNRC6C	88	52.753	Sphenodon_punctatus
ENSTNIG00000005273	tnrc6c1	97	78.749	ENSSPAG00000014977	tnrc6c1	98	75.956	Stegastes_partitus
ENSTNIG00000005273	tnrc6c1	95	68.790	ENSSSCG00000034373	TNRC6C	79	60.754	Sus_scrofa
ENSTNIG00000005273	tnrc6c1	100	60.235	ENSTGUG00000007733	TNRC6C	95	55.580	Taeniopygia_guttata
ENSTNIG00000005273	tnrc6c1	100	87.928	ENSTRUG00000011685	tnrc6c1	100	83.110	Takifugu_rubripes
ENSTNIG00000005273	tnrc6c1	84	51.981	ENSTBEG00000005046	TNRC6C	100	49.154	Tupaia_belangeri
ENSTNIG00000005273	tnrc6c1	100	59.766	ENSTTRG00000010828	TNRC6C	94	54.702	Tursiops_truncatus
ENSTNIG00000005273	tnrc6c1	100	58.228	ENSUMAG00000013614	TNRC6C	88	52.635	Ursus_maritimus
ENSTNIG00000005273	tnrc6c1	71	54.641	ENSVPAG00000006765	-	87	60.183	Vicugna_pacos
ENSTNIG00000005273	tnrc6c1	100	61.188	ENSVVUG00000015268	TNRC6C	80	55.098	Vulpes_vulpes
ENSTNIG00000005273	tnrc6c1	100	57.741	ENSXETG00000019470	tnrc6c	80	52.374	Xenopus_tropicalis
ENSTNIG00000005273	tnrc6c1	100	75.963	ENSXMAG00000025971	tnrc6c1	100	71.118	Xiphophorus_maculatus