EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000005713 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Plus strand
Length: 4573 bases
Position: chrUn_random:32021413-32025985
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000008424	PRP21_like_P	PF12230.8	1.1e-19	1	1
ENSTNIP00000004995	PRP21_like_P	PF12230.8	1.5e-19	1	1
ENSTNIP00000004468	PRP21_like_P	PF12230.8	1.5e-19	1	1
ENSTNIP00000004995	Surp	PF01805.20	1.6e-21	1	1
ENSTNIP00000004468	Surp	PF01805.20	1.7e-21	1	1
ENSTNIP00000008424	Surp	PF01805.20	1.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000008591	-	1965	-	ENSTNIP00000008424	654 (aa)	-	H3CJJ5
ENSTNIT00000004609	-	2031	-	ENSTNIP00000004468	676 (aa)	-	H3C896
ENSTNIT00000005141	-	1995	-	ENSTNIP00000004995	664 (aa)	-	H3C9S3

Gene Model

Click here to download ENSTNIG00000005713's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000005713's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000005713	sf3a1	89	86.607	ENSG00000099995	SF3A1	64	81.413	Homo_sapiens
ENSTNIG00000005713	sf3a1	88	88.496	ENSAPOG00000020465	sf3a1	62	88.848	Acanthochromis_polyacanthus
ENSTNIG00000005713	sf3a1	89	85.714	ENSAMEG00000007737	SF3A1	64	81.413	Ailuropoda_melanoleuca
ENSTNIG00000005713	sf3a1	88	89.381	ENSACIG00000020672	sf3a1	62	86.989	Amphilophus_citrinellus
ENSTNIG00000005713	sf3a1	88	88.496	ENSAOCG00000003060	sf3a1	62	88.848	Amphiprion_ocellaris
ENSTNIG00000005713	sf3a1	88	88.496	ENSAPEG00000010735	sf3a1	62	88.848	Amphiprion_percula
ENSTNIG00000005713	sf3a1	88	88.496	ENSATEG00000021201	sf3a1	63	87.732	Anabas_testudineus
ENSTNIG00000005713	sf3a1	89	84.956	ENSAPLG00000009057	SF3A1	63	84.328	Anas_platyrhynchos
ENSTNIG00000005713	sf3a1	89	86.607	ENSACAG00000009415	SF3A1	60	81.481	Anolis_carolinensis
ENSTNIG00000005713	sf3a1	89	85.714	ENSANAG00000032045	SF3A1	64	81.413	Aotus_nancymaae
ENSTNIG00000005713	sf3a1	88	88.496	ENSACLG00000012622	sf3a1	62	88.060	Astatotilapia_calliptera
ENSTNIG00000005713	sf3a1	88	91.743	ENSAMXG00000005382	sf3a1	58	86.296	Astyanax_mexicanus
ENSTNIG00000005713	sf3a1	89	86.607	ENSBTAG00000003390	SF3A1	64	81.041	Bos_taurus
ENSTNIG00000005713	sf3a1	89	86.607	ENSCJAG00000010370	SF3A1	64	81.413	Callithrix_jacchus
ENSTNIG00000005713	sf3a1	89	85.714	ENSCAFG00000012559	SF3A1	64	81.413	Canis_familiaris
ENSTNIG00000005713	sf3a1	89	85.714	ENSCAFG00020000838	SF3A1	64	81.413	Canis_lupus_dingo
ENSTNIG00000005713	sf3a1	89	86.607	ENSCHIG00000018642	SF3A1	62	80.297	Capra_hircus
ENSTNIG00000005713	sf3a1	89	85.714	ENSTSYG00000004739	SF3A1	64	81.413	Carlito_syrichta
ENSTNIG00000005713	sf3a1	75	69.259	ENSCAPG00000015414	SF3A1	50	66.296	Cavia_aperea
ENSTNIG00000005713	sf3a1	89	86.607	ENSCPOG00000014589	SF3A1	64	81.041	Cavia_porcellus
ENSTNIG00000005713	sf3a1	89	85.714	ENSCCAG00000032006	SF3A1	64	81.413	Cebus_capucinus
ENSTNIG00000005713	sf3a1	89	86.607	ENSCATG00000029241	SF3A1	64	81.413	Cercocebus_atys
ENSTNIG00000005713	sf3a1	89	86.607	ENSCLAG00000006508	SF3A1	64	81.041	Chinchilla_lanigera
ENSTNIG00000005713	sf3a1	89	86.607	ENSCSAG00000009470	SF3A1	64	81.413	Chlorocebus_sabaeus
ENSTNIG00000005713	sf3a1	88	87.037	ENSCPBG00000007595	SF3A1	64	80.970	Chrysemys_picta_bellii
ENSTNIG00000005713	sf3a1	91	61.702	ENSCSAVG00000005608	-	54	61.682	Ciona_savignyi
ENSTNIG00000005713	sf3a1	89	86.607	ENSCANG00000033564	SF3A1	64	81.413	Colobus_angolensis_palliatus
ENSTNIG00000005713	sf3a1	81	84.821	ENSCGRG00001008933	Sf3a1	64	84.758	Cricetulus_griseus_chok1gshd
ENSTNIG00000005713	sf3a1	81	84.821	ENSCGRG00000006127	Sf3a1	64	84.758	Cricetulus_griseus_crigri
ENSTNIG00000005713	sf3a1	88	91.743	ENSCSEG00000010792	sf3a1	56	87.687	Cynoglossus_semilaevis
ENSTNIG00000005713	sf3a1	89	90.826	ENSCVAG00000004560	sf3a1	62	85.036	Cyprinodon_variegatus
ENSTNIG00000005713	sf3a1	88	89.286	ENSDARG00000041887	sf3a1	65	85.821	Danio_rerio
ENSTNIG00000005713	sf3a1	89	86.607	ENSDNOG00000010629	SF3A1	56	80.297	Dasypus_novemcinctus
ENSTNIG00000005713	sf3a1	89	85.714	ENSDORG00000005613	Sf3a1	64	81.413	Dipodomys_ordii
ENSTNIG00000005713	sf3a1	51	83.209	ENSETEG00000017194	SF3A1	57	80.970	Echinops_telfairi
ENSTNIG00000005713	sf3a1	92	71.223	ENSEBUG00000001285	sf3a1	51	75.410	Eptatretus_burgeri
ENSTNIG00000005713	sf3a1	89	86.607	ENSEASG00005010254	SF3A1	64	81.413	Equus_asinus_asinus
ENSTNIG00000005713	sf3a1	89	86.607	ENSECAG00000023962	SF3A1	64	81.413	Equus_caballus
ENSTNIG00000005713	sf3a1	89	86.607	ENSELUG00000022578	sf3a1	62	81.852	Esox_lucius
ENSTNIG00000005713	sf3a1	89	86.607	ENSFCAG00000011932	SF3A1	64	81.413	Felis_catus
ENSTNIG00000005713	sf3a1	81	84.956	ENSFALG00000006944	SF3A1	61	82.836	Ficedula_albicollis
ENSTNIG00000005713	sf3a1	89	86.607	ENSFDAG00000009560	SF3A1	64	81.041	Fukomys_damarensis
ENSTNIG00000005713	sf3a1	89	88.496	ENSFHEG00000010866	sf3a1	64	86.617	Fundulus_heteroclitus
ENSTNIG00000005713	sf3a1	90	89.381	ENSGMOG00000016024	sf3a1	62	83.271	Gadus_morhua
ENSTNIG00000005713	sf3a1	89	84.956	ENSGALG00000007937	SF3A1	61	84.701	Gallus_gallus
ENSTNIG00000005713	sf3a1	89	88.496	ENSGAFG00000009111	sf3a1	64	86.617	Gambusia_affinis
ENSTNIG00000005713	sf3a1	88	93.578	ENSGACG00000011893	sf3a1	64	86.567	Gasterosteus_aculeatus
ENSTNIG00000005713	sf3a1	72	85.333	ENSGAGG00000000762	SF3A1	62	80.970	Gopherus_agassizii
ENSTNIG00000005713	sf3a1	89	86.607	ENSGGOG00000012631	SF3A1	64	81.413	Gorilla_gorilla
ENSTNIG00000005713	sf3a1	88	88.496	ENSHBUG00000015795	sf3a1	64	88.060	Haplochromis_burtoni
ENSTNIG00000005713	sf3a1	89	86.607	ENSHGLG00000007907	SF3A1	64	81.413	Heterocephalus_glaber_female
ENSTNIG00000005713	sf3a1	89	86.607	ENSHGLG00100013799	SF3A1	64	81.413	Heterocephalus_glaber_male
ENSTNIG00000005713	sf3a1	89	85.348	ENSHCOG00000015423	sf3a1	62	85.714	Hippocampus_comes
ENSTNIG00000005713	sf3a1	88	88.991	ENSIPUG00000002470	sf3a1	59	85.926	Ictalurus_punctatus
ENSTNIG00000005713	sf3a1	89	86.607	ENSSTOG00000013892	SF3A1	64	81.413	Ictidomys_tridecemlineatus
ENSTNIG00000005713	sf3a1	89	86.607	ENSJJAG00000022566	Sf3a1	64	81.413	Jaculus_jaculus
ENSTNIG00000005713	sf3a1	89	86.726	ENSKMAG00000002400	sf3a1	62	87.361	Kryptolebias_marmoratus
ENSTNIG00000005713	sf3a1	88	87.611	ENSLBEG00000022974	sf3a1	62	86.940	Labrus_bergylta
ENSTNIG00000005713	sf3a1	89	84.821	ENSLACG00000003565	SF3A1	57	82.784	Latimeria_chalumnae
ENSTNIG00000005713	sf3a1	88	90.179	ENSLOCG00000008251	sf3a1	58	85.240	Lepisosteus_oculatus
ENSTNIG00000005713	sf3a1	84	68.750	ENSLAFG00000026032	-	50	68.750	Loxodonta_africana
ENSTNIG00000005713	sf3a1	89	87.356	ENSLAFG00000000448	SF3A1	63	88.506	Loxodonta_africana
ENSTNIG00000005713	sf3a1	89	86.607	ENSMFAG00000031979	SF3A1	64	81.784	Macaca_fascicularis
ENSTNIG00000005713	sf3a1	89	86.607	ENSMMUG00000005547	SF3A1	64	81.784	Macaca_mulatta
ENSTNIG00000005713	sf3a1	89	86.607	ENSMNEG00000037229	SF3A1	64	81.413	Macaca_nemestrina
ENSTNIG00000005713	sf3a1	89	86.607	ENSMLEG00000041908	SF3A1	64	81.413	Mandrillus_leucophaeus
ENSTNIG00000005713	sf3a1	88	89.381	ENSMAMG00000006460	sf3a1	61	89.219	Mastacembelus_armatus
ENSTNIG00000005713	sf3a1	88	88.496	ENSMZEG00005009633	sf3a1	62	88.060	Maylandia_zebra
ENSTNIG00000005713	sf3a1	89	84.956	ENSMGAG00000001330	SF3A1	63	84.701	Meleagris_gallopavo
ENSTNIG00000005713	sf3a1	81	84.821	ENSMAUG00000020317	Sf3a1	64	71.004	Mesocricetus_auratus
ENSTNIG00000005713	sf3a1	89	85.714	ENSMICG00000010038	SF3A1	64	81.784	Microcebus_murinus
ENSTNIG00000005713	sf3a1	81	84.821	ENSMOCG00000008438	Sf3a1	64	81.413	Microtus_ochrogaster
ENSTNIG00000005713	sf3a1	88	90.826	ENSMMOG00000015588	sf3a1	61	82.836	Mola_mola
ENSTNIG00000005713	sf3a1	89	85.714	ENSMODG00000009270	SF3A1	64	80.669	Monodelphis_domestica
ENSTNIG00000005713	sf3a1	89	90.265	ENSMALG00000000148	sf3a1	66	86.861	Monopterus_albus
ENSTNIG00000005713	sf3a1	81	84.821	MGP_CAROLIEiJ_G0016029	Sf3a1	64	81.041	Mus_caroli
ENSTNIG00000005713	sf3a1	81	84.821	ENSMUSG00000002129	Sf3a1	64	81.041	Mus_musculus
ENSTNIG00000005713	sf3a1	81	84.821	MGP_PahariEiJ_G0016862	Sf3a1	64	81.041	Mus_pahari
ENSTNIG00000005713	sf3a1	81	84.821	MGP_SPRETEiJ_G0016870	Sf3a1	64	81.041	Mus_spretus
ENSTNIG00000005713	sf3a1	89	85.714	ENSMPUG00000013144	SF3A1	64	81.041	Mustela_putorius_furo
ENSTNIG00000005713	sf3a1	89	86.607	ENSMLUG00000002139	SF3A1	64	81.413	Myotis_lucifugus
ENSTNIG00000005713	sf3a1	89	86.607	ENSNGAG00000016977	Sf3a1	64	81.041	Nannospalax_galili
ENSTNIG00000005713	sf3a1	88	88.496	ENSNBRG00000016642	sf3a1	64	88.060	Neolamprologus_brichardi
ENSTNIG00000005713	sf3a1	89	86.607	ENSNLEG00000003686	SF3A1	64	81.413	Nomascus_leucogenys
ENSTNIG00000005713	sf3a1	89	85.714	ENSOPRG00000016636	SF3A1	64	81.041	Ochotona_princeps
ENSTNIG00000005713	sf3a1	89	85.714	ENSODEG00000002571	SF3A1	64	81.413	Octodon_degus
ENSTNIG00000005713	sf3a1	89	88.496	ENSONIG00000010848	sf3a1	64	88.433	Oreochromis_niloticus
ENSTNIG00000005713	sf3a1	89	84.821	ENSOCUG00000007633	SF3A1	64	81.413	Oryctolagus_cuniculus
ENSTNIG00000005713	sf3a1	73	87.500	ENSORLG00000013050	sf3a1	54	88.060	Oryzias_latipes
ENSTNIG00000005713	sf3a1	73	87.879	ENSORLG00020003236	sf3a1	52	88.433	Oryzias_latipes_hni
ENSTNIG00000005713	sf3a1	88	87.879	ENSORLG00015017411	sf3a1	64	88.433	Oryzias_latipes_hsok
ENSTNIG00000005713	sf3a1	88	88.258	ENSOMEG00000013362	sf3a1	58	88.806	Oryzias_melastigma
ENSTNIG00000005713	sf3a1	89	85.714	ENSOGAG00000012931	SF3A1	64	81.413	Otolemur_garnettii
ENSTNIG00000005713	sf3a1	89	86.607	ENSOARG00000006849	SF3A1	63	80.297	Ovis_aries
ENSTNIG00000005713	sf3a1	89	86.607	ENSPPAG00000041790	SF3A1	64	80.297	Pan_paniscus
ENSTNIG00000005713	sf3a1	89	86.607	ENSPPRG00000004391	SF3A1	64	81.413	Panthera_pardus
ENSTNIG00000005713	sf3a1	89	85.714	ENSPTIG00000000844	SF3A1	66	80.297	Panthera_tigris_altaica
ENSTNIG00000005713	sf3a1	89	86.607	ENSPTRG00000014240	SF3A1	64	81.413	Pan_troglodytes
ENSTNIG00000005713	sf3a1	89	86.607	ENSPANG00000020772	SF3A1	64	81.413	Papio_anubis
ENSTNIG00000005713	sf3a1	71	92.308	ENSPSIG00000012803	SF3A1	57	89.474	Pelodiscus_sinensis
ENSTNIG00000005713	sf3a1	88	89.908	ENSPMGG00000023096	sf3a1	64	86.194	Periophthalmus_magnuspinnatus
ENSTNIG00000005713	sf3a1	81	84.821	ENSPEMG00000009494	Sf3a1	64	81.413	Peromyscus_maniculatus_bairdii
ENSTNIG00000005713	sf3a1	89	84.821	ENSPCIG00000022692	SF3A1	64	79.926	Phascolarctos_cinereus
ENSTNIG00000005713	sf3a1	89	89.381	ENSPFOG00000016768	sf3a1	59	86.900	Poecilia_formosa
ENSTNIG00000005713	sf3a1	89	89.381	ENSPLAG00000017268	sf3a1	64	87.361	Poecilia_latipinna
ENSTNIG00000005713	sf3a1	83	89.381	ENSPMEG00000019811	sf3a1	68	86.842	Poecilia_mexicana
ENSTNIG00000005713	sf3a1	89	89.381	ENSPREG00000010347	sf3a1	64	87.361	Poecilia_reticulata
ENSTNIG00000005713	sf3a1	89	86.607	ENSPPYG00000011707	SF3A1	64	81.413	Pongo_abelii
ENSTNIG00000005713	sf3a1	89	86.607	ENSPCOG00000026630	SF3A1	64	81.784	Propithecus_coquereli
ENSTNIG00000005713	sf3a1	89	86.607	ENSPVAG00000017719	SF3A1	64	80.970	Pteropus_vampyrus
ENSTNIG00000005713	sf3a1	88	88.496	ENSPNYG00000018706	sf3a1	64	88.433	Pundamilia_nyererei
ENSTNIG00000005713	sf3a1	89	90.265	ENSPNAG00000003721	sf3a1	58	86.667	Pygocentrus_nattereri
ENSTNIG00000005713	sf3a1	89	84.821	ENSRNOG00000005218	Sf3a1	64	81.041	Rattus_norvegicus
ENSTNIG00000005713	sf3a1	89	86.607	ENSRBIG00000032167	SF3A1	64	81.413	Rhinopithecus_bieti
ENSTNIG00000005713	sf3a1	89	86.607	ENSRROG00000044908	SF3A1	64	81.413	Rhinopithecus_roxellana
ENSTNIG00000005713	sf3a1	89	85.714	ENSSBOG00000021960	SF3A1	71	80.952	Saimiri_boliviensis_boliviensis
ENSTNIG00000005713	sf3a1	89	85.714	ENSSHAG00000003666	SF3A1	61	79.926	Sarcophilus_harrisii
ENSTNIG00000005713	sf3a1	89	90.179	ENSSFOG00015004579	sf3a1	63	85.507	Scleropages_formosus
ENSTNIG00000005713	sf3a1	88	89.381	ENSSMAG00000004275	sf3a1	56	86.940	Scophthalmus_maximus
ENSTNIG00000005713	sf3a1	88	90.826	ENSSDUG00000022219	sf3a1	62	88.806	Seriola_dumerili
ENSTNIG00000005713	sf3a1	88	90.826	ENSSLDG00000012642	sf3a1	62	88.806	Seriola_lalandi_dorsalis
ENSTNIG00000005713	sf3a1	89	86.607	ENSSARG00000005960	SF3A1	65	71.747	Sorex_araneus
ENSTNIG00000005713	sf3a1	89	85.075	ENSSPUG00000018863	SF3A1	62	85.448	Sphenodon_punctatus
ENSTNIG00000005713	sf3a1	88	88.636	ENSSPAG00000011856	sf3a1	62	89.179	Stegastes_partitus
ENSTNIG00000005713	sf3a1	89	86.607	ENSSSCG00000010002	SF3A1	64	85.502	Sus_scrofa
ENSTNIG00000005713	sf3a1	89	83.955	ENSTGUG00000010547	SF3A1	63	84.328	Taeniopygia_guttata
ENSTNIG00000005713	sf3a1	81	95.413	ENSTRUG00000006118	sf3a1	64	88.652	Takifugu_rubripes
ENSTNIG00000005713	sf3a1	73	75.836	ENSTBEG00000012771	SF3A1	64	76.208	Tupaia_belangeri
ENSTNIG00000005713	sf3a1	89	85.714	ENSTTRG00000001535	SF3A1	62	80.000	Tursiops_truncatus
ENSTNIG00000005713	sf3a1	91	83.271	ENSUAMG00000006750	SF3A1	63	81.413	Ursus_americanus
ENSTNIG00000005713	sf3a1	89	85.714	ENSUMAG00000016665	SF3A1	65	81.413	Ursus_maritimus
ENSTNIG00000005713	sf3a1	89	85.714	ENSVVUG00000003075	SF3A1	64	81.413	Vulpes_vulpes
ENSTNIG00000005713	sf3a1	87	86.239	ENSXETG00000016144	sf3a1	65	90.419	Xenopus_tropicalis
ENSTNIG00000005713	sf3a1	89	87.611	ENSXCOG00000015653	sf3a1	56	85.874	Xiphophorus_couchianus
ENSTNIG00000005713	sf3a1	89	87.611	ENSXMAG00000002753	sf3a1	64	86.245	Xiphophorus_maculatus