EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTNIG00000005778 (Gene tree)
Gene ID: -
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: APEX nuclease (multifunctional DNA repair enzyme) 1
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 1635 bases
Position: chr19:6933798-6935432
Accession: ZDB-GENE-040426-2761
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000008494	Exo_endo_phos	PF03372.23	3.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000008662	-	1324	-	ENSTNIP00000008494	308 (aa)	-	H3CJR5

Gene Model

Click here to download ENSTNIG00000005778's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000005778's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000005778	apex1	99	63.608	ENSG00000100823	APEX1	99	64.873	Homo_sapiens
ENSTNIG00000005778	apex1	100	83.442	ENSAPOG00000017002	apex1	100	83.442	Acanthochromis_polyacanthus
ENSTNIG00000005778	apex1	99	63.291	ENSAMEG00000005418	APEX1	99	63.291	Ailuropoda_melanoleuca
ENSTNIG00000005778	apex1	90	89.170	ENSACIG00000010653	apex1	98	88.316	Amphilophus_citrinellus
ENSTNIG00000005778	apex1	100	84.142	ENSAOCG00000009649	apex1	100	84.142	Amphiprion_ocellaris
ENSTNIG00000005778	apex1	100	84.466	ENSAPEG00000021453	apex1	100	84.466	Amphiprion_percula
ENSTNIG00000005778	apex1	99	85.437	ENSATEG00000002883	apex1	97	85.437	Anabas_testudineus
ENSTNIG00000005778	apex1	99	68.254	ENSACAG00000008099	APEX1	99	68.254	Anolis_carolinensis
ENSTNIG00000005778	apex1	99	64.241	ENSANAG00000030117	APEX1	99	64.241	Aotus_nancymaae
ENSTNIG00000005778	apex1	89	88.364	ENSACLG00000018441	apex1	100	85.161	Astatotilapia_calliptera
ENSTNIG00000005778	apex1	99	83.226	ENSAMXG00000034699	apex1	99	83.226	Astyanax_mexicanus
ENSTNIG00000005778	apex1	99	62.658	ENSBTAG00000002745	APEX1	99	62.658	Bos_taurus
ENSTNIG00000005778	apex1	92	43.509	WBGene00001372	exo-3	98	43.509	Caenorhabditis_elegans
ENSTNIG00000005778	apex1	99	64.241	ENSCJAG00000009726	APEX1	99	64.241	Callithrix_jacchus
ENSTNIG00000005778	apex1	99	63.608	ENSCAFG00000032033	APEX1	99	64.241	Canis_familiaris
ENSTNIG00000005778	apex1	99	63.608	ENSCAFG00020014377	-	99	64.241	Canis_lupus_dingo
ENSTNIG00000005778	apex1	53	57.059	ENSCAFG00020023002	-	94	58.235	Canis_lupus_dingo
ENSTNIG00000005778	apex1	98	50.662	ENSCHIG00000014537	-	97	50.662	Capra_hircus
ENSTNIG00000005778	apex1	99	62.658	ENSCHIG00000007298	-	99	62.658	Capra_hircus
ENSTNIG00000005778	apex1	99	63.291	ENSTSYG00000034813	APEX1	99	63.291	Carlito_syrichta
ENSTNIG00000005778	apex1	86	62.409	ENSCAPG00000016235	APEX1	91	67.797	Cavia_aperea
ENSTNIG00000005778	apex1	99	64.241	ENSCPOG00000030909	APEX1	99	64.241	Cavia_porcellus
ENSTNIG00000005778	apex1	99	64.241	ENSCCAG00000033056	-	99	64.241	Cebus_capucinus
ENSTNIG00000005778	apex1	99	55.380	ENSCCAG00000031931	-	99	56.329	Cebus_capucinus
ENSTNIG00000005778	apex1	99	62.975	ENSCATG00000015580	APEX1	99	62.975	Cercocebus_atys
ENSTNIG00000005778	apex1	99	63.608	ENSCLAG00000001002	APEX1	99	63.608	Chinchilla_lanigera
ENSTNIG00000005778	apex1	99	63.291	ENSCSAG00000016685	-	99	63.291	Chlorocebus_sabaeus
ENSTNIG00000005778	apex1	99	63.291	ENSCSAG00000016670	-	99	63.291	Chlorocebus_sabaeus
ENSTNIG00000005778	apex1	99	69.620	ENSCPBG00000009567	APEX1	99	69.716	Chrysemys_picta_bellii
ENSTNIG00000005778	apex1	99	51.645	ENSCING00000008137	-	93	51.645	Ciona_intestinalis
ENSTNIG00000005778	apex1	87	48.881	ENSCSAVG00000007144	-	99	51.362	Ciona_savignyi
ENSTNIG00000005778	apex1	99	63.924	ENSCANG00000030726	APEX1	99	63.924	Colobus_angolensis_palliatus
ENSTNIG00000005778	apex1	99	62.540	ENSCGRG00001017046	Apex1	99	62.540	Cricetulus_griseus_chok1gshd
ENSTNIG00000005778	apex1	99	62.540	ENSCGRG00000008984	Apex1	99	62.540	Cricetulus_griseus_crigri
ENSTNIG00000005778	apex1	100	82.903	ENSCSEG00000017499	apex1	99	82.903	Cynoglossus_semilaevis
ENSTNIG00000005778	apex1	100	86.129	ENSCVAG00000022075	apex1	100	86.129	Cyprinodon_variegatus
ENSTNIG00000005778	apex1	99	82.792	ENSDARG00000045843	apex1	99	82.792	Danio_rerio
ENSTNIG00000005778	apex1	99	60.759	ENSDNOG00000042234	APEX1	94	60.759	Dasypus_novemcinctus
ENSTNIG00000005778	apex1	99	63.291	ENSDORG00000001616	Apex1	99	63.291	Dipodomys_ordii
ENSTNIG00000005778	apex1	99	63.608	ENSETEG00000004855	-	99	63.608	Echinops_telfairi
ENSTNIG00000005778	apex1	77	59.244	ENSEBUG00000000622	-	92	59.244	Eptatretus_burgeri
ENSTNIG00000005778	apex1	99	64.557	ENSEASG00005017489	APEX1	73	64.557	Equus_asinus_asinus
ENSTNIG00000005778	apex1	99	64.557	ENSECAG00000022325	APEX1	81	64.557	Equus_caballus
ENSTNIG00000005778	apex1	87	67.658	ENSEEUG00000012569	APEX1	96	66.426	Erinaceus_europaeus
ENSTNIG00000005778	apex1	99	82.258	ENSELUG00000021706	apex1	99	83.871	Esox_lucius
ENSTNIG00000005778	apex1	99	64.241	ENSFCAG00000030869	APEX1	99	64.241	Felis_catus
ENSTNIG00000005778	apex1	99	64.241	ENSFDAG00000006120	APEX1	99	64.241	Fukomys_damarensis
ENSTNIG00000005778	apex1	100	85.161	ENSFHEG00000009031	apex1	83	85.161	Fundulus_heteroclitus
ENSTNIG00000005778	apex1	100	76.603	ENSGMOG00000007943	apex1	99	76.603	Gadus_morhua
ENSTNIG00000005778	apex1	100	83.871	ENSGAFG00000005311	apex1	100	83.871	Gambusia_affinis
ENSTNIG00000005778	apex1	100	86.129	ENSGACG00000019497	apex1	99	88.346	Gasterosteus_aculeatus
ENSTNIG00000005778	apex1	99	69.304	ENSGAGG00000014999	APEX1	99	69.304	Gopherus_agassizii
ENSTNIG00000005778	apex1	99	63.924	ENSGGOG00000002128	APEX1	99	65.190	Gorilla_gorilla
ENSTNIG00000005778	apex1	100	84.466	ENSHBUG00000005894	apex1	100	84.466	Haplochromis_burtoni
ENSTNIG00000005778	apex1	99	63.924	ENSHGLG00000002848	APEX1	99	63.924	Heterocephalus_glaber_female
ENSTNIG00000005778	apex1	99	63.924	ENSHGLG00100017878	APEX1	99	63.924	Heterocephalus_glaber_male
ENSTNIG00000005778	apex1	100	85.531	ENSHCOG00000009961	apex1	100	85.531	Hippocampus_comes
ENSTNIG00000005778	apex1	99	82.201	ENSIPUG00000005799	apex1	99	82.201	Ictalurus_punctatus
ENSTNIG00000005778	apex1	99	64.873	ENSSTOG00000010096	APEX1	99	64.873	Ictidomys_tridecemlineatus
ENSTNIG00000005778	apex1	99	56.329	ENSJJAG00000003660	-	99	56.329	Jaculus_jaculus
ENSTNIG00000005778	apex1	90	60.215	ENSJJAG00000020465	-	94	58.763	Jaculus_jaculus
ENSTNIG00000005778	apex1	99	63.259	ENSJJAG00000012067	-	98	63.259	Jaculus_jaculus
ENSTNIG00000005778	apex1	100	85.484	ENSKMAG00000021171	apex1	100	85.484	Kryptolebias_marmoratus
ENSTNIG00000005778	apex1	100	86.129	ENSLBEG00000010248	apex1	100	86.129	Labrus_bergylta
ENSTNIG00000005778	apex1	99	71.795	ENSLACG00000008617	APEX1	99	71.795	Latimeria_chalumnae
ENSTNIG00000005778	apex1	99	78.025	ENSLOCG00000015516	apex1	99	78.025	Lepisosteus_oculatus
ENSTNIG00000005778	apex1	90	68.817	ENSLAFG00000021872	APEX1	99	63.924	Loxodonta_africana
ENSTNIG00000005778	apex1	99	64.241	ENSMFAG00000002565	APEX1	99	64.241	Macaca_fascicularis
ENSTNIG00000005778	apex1	99	62.975	ENSMMUG00000048039	APEX1	99	62.975	Macaca_mulatta
ENSTNIG00000005778	apex1	99	63.522	ENSMNEG00000036944	APEX1	99	63.522	Macaca_nemestrina
ENSTNIG00000005778	apex1	99	62.975	ENSMLEG00000042125	APEX1	99	62.975	Mandrillus_leucophaeus
ENSTNIG00000005778	apex1	100	85.484	ENSMAMG00000023526	apex1	100	85.484	Mastacembelus_armatus
ENSTNIG00000005778	apex1	89	88.364	ENSMZEG00005014187	apex1	100	85.161	Maylandia_zebra
ENSTNIG00000005778	apex1	99	62.857	ENSMAUG00000013994	Apex1	99	62.857	Mesocricetus_auratus
ENSTNIG00000005778	apex1	99	63.608	ENSMICG00000043554	APEX1	99	63.608	Microcebus_murinus
ENSTNIG00000005778	apex1	99	63.810	ENSMOCG00000013721	Apex1	99	63.810	Microtus_ochrogaster
ENSTNIG00000005778	apex1	100	86.495	ENSMMOG00000010031	apex1	97	87.138	Mola_mola
ENSTNIG00000005778	apex1	90	67.742	ENSMODG00000007125	APEX1	97	62.903	Monodelphis_domestica
ENSTNIG00000005778	apex1	91	82.500	ENSMALG00000011699	apex1	79	81.911	Monopterus_albus
ENSTNIG00000005778	apex1	99	64.331	MGP_CAROLIEiJ_G0019209	Apex1	99	64.331	Mus_caroli
ENSTNIG00000005778	apex1	99	64.127	ENSMUSG00000035960	Apex1	99	64.127	Mus_musculus
ENSTNIG00000005778	apex1	99	63.810	MGP_PahariEiJ_G0030232	Apex1	99	64.127	Mus_pahari
ENSTNIG00000005778	apex1	99	64.127	MGP_SPRETEiJ_G0020101	Apex1	99	64.127	Mus_spretus
ENSTNIG00000005778	apex1	99	62.579	ENSMLUG00000028957	APEX1	99	62.579	Myotis_lucifugus
ENSTNIG00000005778	apex1	87	51.264	ENSNGAG00000021748	-	85	51.264	Nannospalax_galili
ENSTNIG00000005778	apex1	99	63.291	ENSNGAG00000002725	-	99	63.291	Nannospalax_galili
ENSTNIG00000005778	apex1	89	88.364	ENSNBRG00000005334	apex1	91	85.161	Neolamprologus_brichardi
ENSTNIG00000005778	apex1	99	63.987	ENSNLEG00000010839	APEX1	99	63.987	Nomascus_leucogenys
ENSTNIG00000005778	apex1	99	63.141	ENSMEUG00000014519	APEX1	99	63.141	Notamacropus_eugenii
ENSTNIG00000005778	apex1	99	63.810	ENSOPRG00000014029	APEX1	99	63.810	Ochotona_princeps
ENSTNIG00000005778	apex1	82	54.762	ENSODEG00000004777	-	83	54.762	Octodon_degus
ENSTNIG00000005778	apex1	99	51.097	ENSODEG00000006583	-	98	51.097	Octodon_degus
ENSTNIG00000005778	apex1	99	63.924	ENSODEG00000001703	-	99	63.924	Octodon_degus
ENSTNIG00000005778	apex1	90	88.448	ENSONIG00000012089	apex1	100	85.161	Oreochromis_niloticus
ENSTNIG00000005778	apex1	89	68.364	ENSOANG00000008836	APEX1	80	63.354	Ornithorhynchus_anatinus
ENSTNIG00000005778	apex1	99	64.241	ENSOCUG00000005022	APEX1	99	64.241	Oryctolagus_cuniculus
ENSTNIG00000005778	apex1	100	85.852	ENSORLG00000012378	apex1	100	85.852	Oryzias_latipes
ENSTNIG00000005778	apex1	100	85.852	ENSORLG00020021371	apex1	100	85.852	Oryzias_latipes_hni
ENSTNIG00000005778	apex1	100	85.852	ENSORLG00015020089	apex1	100	85.852	Oryzias_latipes_hsok
ENSTNIG00000005778	apex1	100	87.781	ENSOMEG00000018876	apex1	100	87.781	Oryzias_melastigma
ENSTNIG00000005778	apex1	90	60.573	ENSOGAG00000029355	-	97	57.566	Otolemur_garnettii
ENSTNIG00000005778	apex1	99	64.873	ENSOGAG00000013335	-	99	64.873	Otolemur_garnettii
ENSTNIG00000005778	apex1	96	59.804	ENSOARG00000001876	-	99	59.804	Ovis_aries
ENSTNIG00000005778	apex1	99	62.658	ENSOARG00000019740	-	99	62.658	Ovis_aries
ENSTNIG00000005778	apex1	90	55.914	ENSOARG00000014424	-	89	55.914	Ovis_aries
ENSTNIG00000005778	apex1	99	64.309	ENSPPAG00000038760	APEX1	99	64.873	Pan_paniscus
ENSTNIG00000005778	apex1	99	64.241	ENSPPRG00000011794	APEX1	99	64.241	Panthera_pardus
ENSTNIG00000005778	apex1	99	64.241	ENSPTIG00000014829	APEX1	99	64.241	Panthera_tigris_altaica
ENSTNIG00000005778	apex1	99	64.309	ENSPTRG00000006093	APEX1	99	64.873	Pan_troglodytes
ENSTNIG00000005778	apex1	99	62.975	ENSPANG00000022757	APEX1	99	62.975	Papio_anubis
ENSTNIG00000005778	apex1	90	85.145	ENSPKIG00000003504	apex1	99	81.731	Paramormyrops_kingsleyae
ENSTNIG00000005778	apex1	87	75.093	ENSPMGG00000016596	apex1	79	75.093	Periophthalmus_magnuspinnatus
ENSTNIG00000005778	apex1	99	63.175	ENSPEMG00000019097	Apex1	99	63.175	Peromyscus_maniculatus_bairdii
ENSTNIG00000005778	apex1	94	72.165	ENSPMAG00000007275	-	99	72.165	Petromyzon_marinus
ENSTNIG00000005778	apex1	90	67.384	ENSPCIG00000023274	APEX1	97	62.460	Phascolarctos_cinereus
ENSTNIG00000005778	apex1	100	84.194	ENSPFOG00000004178	apex1	100	84.194	Poecilia_formosa
ENSTNIG00000005778	apex1	100	84.194	ENSPLAG00000012779	apex1	100	84.194	Poecilia_latipinna
ENSTNIG00000005778	apex1	100	84.194	ENSPMEG00000019623	apex1	100	84.194	Poecilia_mexicana
ENSTNIG00000005778	apex1	100	83.548	ENSPREG00000014298	apex1	99	83.548	Poecilia_reticulata
ENSTNIG00000005778	apex1	99	63.291	ENSPPYG00000005565	APEX1	99	64.557	Pongo_abelii
ENSTNIG00000005778	apex1	99	62.975	ENSPCAG00000010376	APEX1	99	62.975	Procavia_capensis
ENSTNIG00000005778	apex1	99	63.924	ENSPCOG00000021564	APEX1	99	63.924	Propithecus_coquereli
ENSTNIG00000005778	apex1	99	62.579	ENSPVAG00000010736	APEX1	99	62.579	Pteropus_vampyrus
ENSTNIG00000005778	apex1	89	88.727	ENSPNYG00000023940	apex1	100	85.484	Pundamilia_nyererei
ENSTNIG00000005778	apex1	99	77.597	ENSPNAG00000020897	apex1	96	82.807	Pygocentrus_nattereri
ENSTNIG00000005778	apex1	99	63.492	ENSRNOG00000009663	Apex1	99	63.492	Rattus_norvegicus
ENSTNIG00000005778	apex1	99	63.291	ENSRBIG00000038325	APEX1	98	63.291	Rhinopithecus_bieti
ENSTNIG00000005778	apex1	99	64.241	ENSSBOG00000018921	-	99	64.241	Saimiri_boliviensis_boliviensis
ENSTNIG00000005778	apex1	99	58.117	ENSSBOG00000031372	-	99	58.117	Saimiri_boliviensis_boliviensis
ENSTNIG00000005778	apex1	99	61.491	ENSSHAG00000013524	APEX1	97	62.739	Sarcophilus_harrisii
ENSTNIG00000005778	apex1	99	79.545	ENSSFOG00015001948	apex1	99	81.494	Scleropages_formosus
ENSTNIG00000005778	apex1	100	85.397	ENSSMAG00000013348	apex1	100	85.714	Scophthalmus_maximus
ENSTNIG00000005778	apex1	100	84.839	ENSSDUG00000016377	apex1	99	84.839	Seriola_dumerili
ENSTNIG00000005778	apex1	100	84.839	ENSSLDG00000023005	apex1	100	84.839	Seriola_lalandi_dorsalis
ENSTNIG00000005778	apex1	91	70.714	ENSSPUG00000000531	APEX1	95	70.714	Sphenodon_punctatus
ENSTNIG00000005778	apex1	100	84.839	ENSSPAG00000000458	apex1	100	84.839	Stegastes_partitus
ENSTNIG00000005778	apex1	99	62.975	ENSSSCG00000040060	-	99	63.291	Sus_scrofa
ENSTNIG00000005778	apex1	95	39.203	ENSSSCG00000039705	-	98	39.203	Sus_scrofa
ENSTNIG00000005778	apex1	76	57.872	ENSTGUG00000014378	APEX1	100	57.872	Taeniopygia_guttata
ENSTNIG00000005778	apex1	90	93.863	ENSTRUG00000004268	apex1	95	88.179	Takifugu_rubripes
ENSTNIG00000005778	apex1	99	61.076	ENSTBEG00000006405	APEX1	99	61.076	Tupaia_belangeri
ENSTNIG00000005778	apex1	76	66.383	ENSTTRG00000007860	APEX1	100	66.383	Tursiops_truncatus
ENSTNIG00000005778	apex1	99	63.291	ENSUAMG00000010457	APEX1	99	63.291	Ursus_americanus
ENSTNIG00000005778	apex1	99	63.291	ENSUMAG00000009178	APEX1	99	63.291	Ursus_maritimus
ENSTNIG00000005778	apex1	76	62.979	ENSVPAG00000005083	APEX1	100	62.979	Vicugna_pacos
ENSTNIG00000005778	apex1	99	63.291	ENSVVUG00000009010	APEX1	99	63.924	Vulpes_vulpes
ENSTNIG00000005778	apex1	99	67.516	ENSXETG00000024773	apex1	99	68.471	Xenopus_tropicalis
ENSTNIG00000005778	apex1	100	84.516	ENSXCOG00000015233	apex1	99	84.516	Xiphophorus_couchianus
ENSTNIG00000005778	apex1	100	84.516	ENSXMAG00000006195	apex1	100	84.516	Xiphophorus_maculatus