EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTNIG00000006127 (Gene tree)
Gene ID: -
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Tetraodon_nigroviridis
Status: putative
Strand: Minus strand
Length: 4490 bases
Position: chr18:15805-20294
Accession: ZDB-GENE-030131-9612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTNIP00000008871	RRM_1	PF00076.22	1.2e-38	1	3
ENSTNIP00000008871	RRM_1	PF00076.22	1.2e-38	2	3
ENSTNIP00000008871	RRM_1	PF00076.22	1.2e-38	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTNIT00000009042	-	1809	-	ENSTNIP00000008871	602 (aa)	-	H3CKU2

Gene Model

Click here to download ENSTNIG00000006127's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTNIG00000006127's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTNIG00000006127	rbm47	50	62.914	ENSTNIG00000008714	rbm46	57	64.238
ENSTNIG00000006127	rbm47	51	53.548	ENSTNIG00000002821	syncrip	67	49.479
ENSTNIG00000006127	rbm47	51	54.019	ENSTNIG00000017299	syncripl	71	48.312
ENSTNIG00000006127	rbm47	76	51.306	ENSTNIG00000003580	a1cf	94	50.515

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTNIG00000006127	rbm47	95	84.551	ENSG00000163694	RBM47	100	81.654	Homo_sapiens
ENSTNIG00000006127	rbm47	100	89.542	ENSAPOG00000011062	rbm47	100	93.316	Acanthochromis_polyacanthus
ENSTNIG00000006127	rbm47	94	76.724	ENSAMEG00000009672	RBM47	100	74.634	Ailuropoda_melanoleuca
ENSTNIG00000006127	rbm47	100	88.760	ENSACIG00000011531	rbm47	100	88.760	Amphilophus_citrinellus
ENSTNIG00000006127	rbm47	100	91.626	ENSAOCG00000022245	rbm47	100	93.059	Amphiprion_ocellaris
ENSTNIG00000006127	rbm47	100	91.612	ENSAPEG00000018304	rbm47	100	93.059	Amphiprion_percula
ENSTNIG00000006127	rbm47	100	91.570	ENSATEG00000018400	rbm47	100	91.736	Anabas_testudineus
ENSTNIG00000006127	rbm47	100	74.141	ENSAPLG00000013974	RBM47	100	74.468	Anas_platyrhynchos
ENSTNIG00000006127	rbm47	100	74.673	ENSACAG00000011833	RBM47	100	74.510	Anolis_carolinensis
ENSTNIG00000006127	rbm47	100	74.959	ENSANAG00000029440	RBM47	100	82.171	Aotus_nancymaae
ENSTNIG00000006127	rbm47	100	90.640	ENSACLG00000016902	rbm47	100	90.640	Astatotilapia_calliptera
ENSTNIG00000006127	rbm47	100	82.131	ENSAMXG00000021794	rbm47	100	81.311	Astyanax_mexicanus
ENSTNIG00000006127	rbm47	100	74.384	ENSBTAG00000002356	RBM47	100	76.393	Bos_taurus
ENSTNIG00000006127	rbm47	94	77.661	ENSCJAG00000019385	RBM47	100	82.171	Callithrix_jacchus
ENSTNIG00000006127	rbm47	94	76.614	ENSCAFG00000015898	RBM47	100	75.041	Canis_familiaris
ENSTNIG00000006127	rbm47	80	78.571	ENSCAFG00020010558	RBM47	94	81.186	Canis_lupus_dingo
ENSTNIG00000006127	rbm47	100	74.384	ENSCHIG00000026214	RBM47	100	76.393	Capra_hircus
ENSTNIG00000006127	rbm47	84	65.820	ENSTSYG00000033612	RBM47	93	65.107	Carlito_syrichta
ENSTNIG00000006127	rbm47	100	70.559	ENSCAPG00000008426	RBM47	100	70.395	Cavia_aperea
ENSTNIG00000006127	rbm47	100	75.205	ENSCPOG00000014100	RBM47	100	76.026	Cavia_porcellus
ENSTNIG00000006127	rbm47	99	55.116	ENSCCAG00000024397	-	99	54.290	Cebus_capucinus
ENSTNIG00000006127	rbm47	100	76.112	ENSCCAG00000030129	-	100	81.654	Cebus_capucinus
ENSTNIG00000006127	rbm47	95	84.551	ENSCATG00000042064	RBM47	100	81.654	Cercocebus_atys
ENSTNIG00000006127	rbm47	94	78.049	ENSCLAG00000001684	RBM47	100	77.778	Chinchilla_lanigera
ENSTNIG00000006127	rbm47	95	77.163	ENSCSAG00000017060	RBM47	100	75.817	Chlorocebus_sabaeus
ENSTNIG00000006127	rbm47	84	77.541	ENSCHOG00000011731	RBM47	88	75.439	Choloepus_hoffmanni
ENSTNIG00000006127	rbm47	100	76.923	ENSCPBG00000013831	RBM47	100	76.923	Chrysemys_picta_bellii
ENSTNIG00000006127	rbm47	95	77.972	ENSCANG00000019997	RBM47	100	81.395	Colobus_angolensis_palliatus
ENSTNIG00000006127	rbm47	100	73.941	ENSCGRG00001000623	-	100	81.234	Cricetulus_griseus_chok1gshd
ENSTNIG00000006127	rbm47	89	75.128	ENSCGRG00001020102	-	100	76.667	Cricetulus_griseus_chok1gshd
ENSTNIG00000006127	rbm47	100	73.127	ENSCGRG00000007762	-	100	76.608	Cricetulus_griseus_crigri
ENSTNIG00000006127	rbm47	83	79.494	ENSCGRG00000014760	-	96	81.180	Cricetulus_griseus_crigri
ENSTNIG00000006127	rbm47	94	90.559	ENSCSEG00000004545	rbm47	100	87.459	Cynoglossus_semilaevis
ENSTNIG00000006127	rbm47	100	88.962	ENSCVAG00000020144	rbm47	100	88.962	Cyprinodon_variegatus
ENSTNIG00000006127	rbm47	100	82.043	ENSDARG00000061985	rbm47	100	81.713	Danio_rerio
ENSTNIG00000006127	rbm47	95	77.487	ENSDNOG00000046854	RBM47	100	76.568	Dasypus_novemcinctus
ENSTNIG00000006127	rbm47	100	75.285	ENSDORG00000010144	Rbm47	100	75.974	Dipodomys_ordii
ENSTNIG00000006127	rbm47	94	76.166	ENSETEG00000009194	RBM47	100	76.020	Echinops_telfairi
ENSTNIG00000006127	rbm47	95	59.864	ENSEBUG00000011912	rbm47	97	60.445	Eptatretus_burgeri
ENSTNIG00000006127	rbm47	95	76.910	ENSEASG00005008443	RBM47	100	76.519	Equus_asinus_asinus
ENSTNIG00000006127	rbm47	95	76.910	ENSECAG00000004400	RBM47	100	76.519	Equus_caballus
ENSTNIG00000006127	rbm47	70	88.995	ENSEEUG00000001194	RBM47	75	81.893	Erinaceus_europaeus
ENSTNIG00000006127	rbm47	100	80.945	ENSELUG00000006148	rbm47	100	86.869	Esox_lucius
ENSTNIG00000006127	rbm47	95	78.261	ENSFCAG00000012399	RBM47	100	76.809	Felis_catus
ENSTNIG00000006127	rbm47	100	75.941	ENSFALG00000002861	RBM47	100	76.923	Ficedula_albicollis
ENSTNIG00000006127	rbm47	100	75.453	ENSFDAG00000016326	RBM47	100	75.329	Fukomys_damarensis
ENSTNIG00000006127	rbm47	100	88.391	ENSFHEG00000007938	rbm47	100	88.391	Fundulus_heteroclitus
ENSTNIG00000006127	rbm47	100	81.230	ENSGMOG00000014802	rbm47	100	80.421	Gadus_morhua
ENSTNIG00000006127	rbm47	64	82.005	ENSGALG00000014267	RBM47	99	82.776	Gallus_gallus
ENSTNIG00000006127	rbm47	64	87.855	ENSGAFG00000020571	rbm47	98	87.855	Gambusia_affinis
ENSTNIG00000006127	rbm47	100	88.595	ENSGACG00000016223	rbm47	100	90.206	Gasterosteus_aculeatus
ENSTNIG00000006127	rbm47	100	76.923	ENSGAGG00000020051	RBM47	100	76.923	Gopherus_agassizii
ENSTNIG00000006127	rbm47	95	84.551	ENSGGOG00000001367	RBM47	100	81.654	Gorilla_gorilla
ENSTNIG00000006127	rbm47	100	90.344	ENSHBUG00000003520	rbm47	100	90.344	Haplochromis_burtoni
ENSTNIG00000006127	rbm47	84	62.982	ENSHGLG00000016914	RBM47	100	76.608	Heterocephalus_glaber_female
ENSTNIG00000006127	rbm47	100	74.877	ENSHGLG00100014028	-	100	76.608	Heterocephalus_glaber_male
ENSTNIG00000006127	rbm47	100	67.434	ENSHGLG00100003071	-	100	67.488	Heterocephalus_glaber_male
ENSTNIG00000006127	rbm47	99	89.351	ENSHCOG00000002074	rbm47	99	89.351	Hippocampus_comes
ENSTNIG00000006127	rbm47	100	82.673	ENSIPUG00000004743	rbm47	100	83.003	Ictalurus_punctatus
ENSTNIG00000006127	rbm47	94	76.644	ENSSTOG00000004727	RBM47	100	75.693	Ictidomys_tridecemlineatus
ENSTNIG00000006127	rbm47	94	77.855	ENSJJAG00000013823	Rbm47	100	75.041	Jaculus_jaculus
ENSTNIG00000006127	rbm47	100	88.361	ENSKMAG00000000084	rbm47	100	91.282	Kryptolebias_marmoratus
ENSTNIG00000006127	rbm47	100	90.594	ENSLBEG00000008436	rbm47	100	90.759	Labrus_bergylta
ENSTNIG00000006127	rbm47	94	79.407	ENSLACG00000007196	RBM47	100	76.316	Latimeria_chalumnae
ENSTNIG00000006127	rbm47	94	84.063	ENSLOCG00000012966	rbm47	95	80.464	Lepisosteus_oculatus
ENSTNIG00000006127	rbm47	97	76.190	ENSLAFG00000011998	RBM47	99	77.041	Loxodonta_africana
ENSTNIG00000006127	rbm47	95	84.551	ENSMFAG00000037967	RBM47	100	81.654	Macaca_fascicularis
ENSTNIG00000006127	rbm47	95	77.163	ENSMMUG00000012036	RBM47	100	79.126	Macaca_mulatta
ENSTNIG00000006127	rbm47	95	77.972	ENSMNEG00000040774	RBM47	100	81.395	Macaca_nemestrina
ENSTNIG00000006127	rbm47	95	87.119	ENSMLEG00000041432	RBM47	100	82.927	Mandrillus_leucophaeus
ENSTNIG00000006127	rbm47	100	91.376	ENSMAMG00000019143	rbm47	99	93.264	Mastacembelus_armatus
ENSTNIG00000006127	rbm47	100	90.640	ENSMZEG00005023659	rbm47	100	90.640	Maylandia_zebra
ENSTNIG00000006127	rbm47	100	75.693	ENSMGAG00000012226	RBM47	100	76.183	Meleagris_gallopavo
ENSTNIG00000006127	rbm47	100	73.736	ENSMAUG00000006493	Rbm47	100	80.769	Mesocricetus_auratus
ENSTNIG00000006127	rbm47	94	75.485	ENSMICG00000026417	RBM47	100	79.845	Microcebus_murinus
ENSTNIG00000006127	rbm47	100	73.366	ENSMOCG00000021170	Rbm47	100	80.977	Microtus_ochrogaster
ENSTNIG00000006127	rbm47	100	92.869	ENSMMOG00000007260	rbm47	100	92.869	Mola_mola
ENSTNIG00000006127	rbm47	100	71.192	ENSMODG00000020561	-	100	70.364	Monodelphis_domestica
ENSTNIG00000006127	rbm47	100	75.574	ENSMODG00000007003	RBM47	100	74.795	Monodelphis_domestica
ENSTNIG00000006127	rbm47	50	78.710	ENSMODG00000015426	-	97	78.710	Monodelphis_domestica
ENSTNIG00000006127	rbm47	100	91.391	ENSMALG00000005167	rbm47	100	92.248	Monopterus_albus
ENSTNIG00000006127	rbm47	100	74.141	MGP_CAROLIEiJ_G0027258	Rbm47	100	81.234	Mus_caroli
ENSTNIG00000006127	rbm47	100	79.949	ENSMUSG00000070780	Rbm47	100	81.491	Mus_musculus
ENSTNIG00000006127	rbm47	100	79.692	MGP_PahariEiJ_G0017040	Rbm47	100	81.234	Mus_pahari
ENSTNIG00000006127	rbm47	100	79.949	MGP_SPRETEiJ_G0028253	Rbm47	100	81.491	Mus_spretus
ENSTNIG00000006127	rbm47	94	76.776	ENSMPUG00000006177	RBM47	94	74.673	Mustela_putorius_furo
ENSTNIG00000006127	rbm47	100	74.918	ENSMLUG00000000889	RBM47	100	75.738	Myotis_lucifugus
ENSTNIG00000006127	rbm47	100	74.551	ENSNGAG00000003325	Rbm47	100	74.267	Nannospalax_galili
ENSTNIG00000006127	rbm47	100	90.820	ENSNBRG00000015092	rbm47	100	90.820	Neolamprologus_brichardi
ENSTNIG00000006127	rbm47	95	84.551	ENSNLEG00000017151	RBM47	100	81.654	Nomascus_leucogenys
ENSTNIG00000006127	rbm47	70	79.529	ENSMEUG00000009516	-	99	79.717	Notamacropus_eugenii
ENSTNIG00000006127	rbm47	76	85.000	ENSOPRG00000016507	-	75	85.000	Ochotona_princeps
ENSTNIG00000006127	rbm47	95	77.217	ENSODEG00000004873	RBM47	100	76.190	Octodon_degus
ENSTNIG00000006127	rbm47	100	89.967	ENSONIG00000009061	rbm47	100	90.132	Oreochromis_niloticus
ENSTNIG00000006127	rbm47	100	75.868	ENSOANG00000008978	RBM47	100	76.529	Ornithorhynchus_anatinus
ENSTNIG00000006127	rbm47	100	75.164	ENSOCUG00000012034	RBM47	100	76.519	Oryctolagus_cuniculus
ENSTNIG00000006127	rbm47	100	89.735	ENSORLG00000005847	rbm47	100	91.990	Oryzias_latipes
ENSTNIG00000006127	rbm47	100	89.901	ENSORLG00020005154	rbm47	100	91.990	Oryzias_latipes_hni
ENSTNIG00000006127	rbm47	100	89.570	ENSORLG00015000066	rbm47	100	89.570	Oryzias_latipes_hsok
ENSTNIG00000006127	rbm47	100	90.050	ENSOMEG00000010730	rbm47	100	90.050	Oryzias_melastigma
ENSTNIG00000006127	rbm47	94	71.728	ENSOGAG00000025193	-	100	69.622	Otolemur_garnettii
ENSTNIG00000006127	rbm47	95	76.990	ENSOGAG00000029367	-	100	74.878	Otolemur_garnettii
ENSTNIG00000006127	rbm47	100	66.667	ENSOARG00000012711	RBM47	100	68.197	Ovis_aries
ENSTNIG00000006127	rbm47	95	78.147	ENSPPAG00000029763	RBM47	100	76.694	Pan_paniscus
ENSTNIG00000006127	rbm47	95	82.451	ENSPPRG00000012873	RBM47	100	81.443	Panthera_pardus
ENSTNIG00000006127	rbm47	83	74.950	ENSPTIG00000017046	RBM47	100	76.143	Panthera_tigris_altaica
ENSTNIG00000006127	rbm47	95	84.551	ENSPTRG00000016006	RBM47	100	81.654	Pan_troglodytes
ENSTNIG00000006127	rbm47	95	84.551	ENSPANG00000005980	RBM47	100	81.654	Papio_anubis
ENSTNIG00000006127	rbm47	95	77.217	ENSPKIG00000013431	RBM47	98	76.870	Paramormyrops_kingsleyae
ENSTNIG00000006127	rbm47	95	81.675	ENSPKIG00000005037	rbm47	100	79.669	Paramormyrops_kingsleyae
ENSTNIG00000006127	rbm47	89	78.044	ENSPSIG00000017516	RBM47	97	78.044	Pelodiscus_sinensis
ENSTNIG00000006127	rbm47	94	91.197	ENSPMGG00000018540	rbm47	100	88.040	Periophthalmus_magnuspinnatus
ENSTNIG00000006127	rbm47	100	79.177	ENSPEMG00000011088	Rbm47	100	80.720	Peromyscus_maniculatus_bairdii
ENSTNIG00000006127	rbm47	100	87.908	ENSPFOG00000007997	rbm47	100	88.072	Poecilia_formosa
ENSTNIG00000006127	rbm47	100	88.052	ENSPLAG00000002072	rbm47	100	88.216	Poecilia_latipinna
ENSTNIG00000006127	rbm47	100	87.582	ENSPMEG00000017492	rbm47	100	87.745	Poecilia_mexicana
ENSTNIG00000006127	rbm47	100	87.725	ENSPREG00000008456	rbm47	100	90.746	Poecilia_reticulata
ENSTNIG00000006127	rbm47	94	67.698	ENSPPYG00000014688	RBM47	98	68.096	Pongo_abelii
ENSTNIG00000006127	rbm47	82	80.387	ENSPCAG00000011879	RBM47	81	81.840	Procavia_capensis
ENSTNIG00000006127	rbm47	94	76.049	ENSPCOG00000023451	RBM47	100	80.928	Propithecus_coquereli
ENSTNIG00000006127	rbm47	95	76.684	ENSPVAG00000003812	RBM47	100	75.327	Pteropus_vampyrus
ENSTNIG00000006127	rbm47	100	90.196	ENSPNYG00000022868	rbm47	100	90.196	Pundamilia_nyererei
ENSTNIG00000006127	rbm47	100	83.251	ENSPNAG00000007940	rbm47	100	83.580	Pygocentrus_nattereri
ENSTNIG00000006127	rbm47	100	74.304	ENSRNOG00000002408	Rbm47	100	75.123	Rattus_norvegicus
ENSTNIG00000006127	rbm47	95	77.972	ENSRBIG00000039601	RBM47	100	81.395	Rhinopithecus_bieti
ENSTNIG00000006127	rbm47	95	77.972	ENSRROG00000044696	RBM47	100	81.395	Rhinopithecus_roxellana
ENSTNIG00000006127	rbm47	100	73.510	ENSSBOG00000028475	RBM47	100	78.672	Saimiri_boliviensis_boliviensis
ENSTNIG00000006127	rbm47	100	75.987	ENSSHAG00000017576	RBM47	100	76.519	Sarcophilus_harrisii
ENSTNIG00000006127	rbm47	98	79.062	ENSSFOG00015024101	RBM47	100	79.062	Scleropages_formosus
ENSTNIG00000006127	rbm47	100	77.686	ENSSFOG00015012445	rbm47	100	77.025	Scleropages_formosus
ENSTNIG00000006127	rbm47	100	91.391	ENSSMAG00000009744	rbm47	100	92.248	Scophthalmus_maximus
ENSTNIG00000006127	rbm47	100	91.653	ENSSDUG00000022684	rbm47	100	91.653	Seriola_dumerili
ENSTNIG00000006127	rbm47	100	91.817	ENSSLDG00000003109	rbm47	100	91.817	Seriola_lalandi_dorsalis
ENSTNIG00000006127	rbm47	85	77.273	ENSSARG00000001735	RBM47	75	80.000	Sorex_araneus
ENSTNIG00000006127	rbm47	100	80.463	ENSSPUG00000007515	RBM47	100	80.879	Sphenodon_punctatus
ENSTNIG00000006127	rbm47	100	92.916	ENSSPAG00000001257	rbm47	100	93.830	Stegastes_partitus
ENSTNIG00000006127	rbm47	95	77.083	ENSSSCG00000008796	RBM47	100	76.230	Sus_scrofa
ENSTNIG00000006127	rbm47	100	75.574	ENSTGUG00000008705	RBM47	100	76.557	Taeniopygia_guttata
ENSTNIG00000006127	rbm47	100	91.528	ENSTRUG00000014050	rbm47	100	91.528	Takifugu_rubripes
ENSTNIG00000006127	rbm47	72	83.898	ENSTBEG00000001607	RBM47	76	79.328	Tupaia_belangeri
ENSTNIG00000006127	rbm47	95	77.352	ENSTTRG00000002839	RBM47	100	75.618	Tursiops_truncatus
ENSTNIG00000006127	rbm47	95	77.855	ENSUAMG00000021346	RBM47	100	75.490	Ursus_americanus
ENSTNIG00000006127	rbm47	52	84.921	ENSVPAG00000000641	-	56	75.316	Vicugna_pacos
ENSTNIG00000006127	rbm47	94	76.399	ENSVVUG00000014774	RBM47	100	75.205	Vulpes_vulpes
ENSTNIG00000006127	rbm47	100	74.141	ENSXETG00000012802	rbm47	100	73.977	Xenopus_tropicalis
ENSTNIG00000006127	rbm47	88	87.824	ENSXCOG00000000780	rbm47	100	87.824	Xiphophorus_couchianus
ENSTNIG00000006127	rbm47	100	87.685	ENSXMAG00000009874	rbm47	100	90.231	Xiphophorus_maculatus